RNA–Protein interactions for RNA: ENST00000542641.5

YBX3-213, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 669 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-213ENST00000542641 PPP4R3AQ6IN85 833 aa13.17□□□□□ -0.3
YBX3-213ENST00000542641 MOXD1Q6UVY6 613 aa13.17□□□□□ -0.3
YBX3-213ENST00000542641 PLA2G4DQ86XP0 818 aa13.17□□□□□ -0.3
YBX3-213ENST00000542641 WDR11Q9BZH6 1224 aa13.17□□□□□ -0.3
YBX3-213ENST00000542641 KATNBL1Q9H079 304 aa13.17□□□□□ -0.3
YBX3-213ENST00000542641 JADE2Q9NQC1 790 aa13.17□□□□□ -0.3
YBX3-213ENST00000542641 PDGFCQ9NRA1 345 aa13.17□□□□□ -0.3
YBX3-213ENST00000542641 DDX25Q9UHL0 483 aaKnown RBP13.17□□□□□ -0.3
YBX3-213ENST00000542641 NRBP1Q9UHY1 535 aa13.17□□□□□ -0.3
YBX3-213ENST00000542641 PLXNA1Q9UIW2 1896 aa13.16□□□□□ -0.3
YBX3-213ENST00000542641 SPATA31C2B4DYI2 1134 aa13.16□□□□□ -0.3
YBX3-213ENST00000542641 WNT7AO00755 349 aa13.16□□□□□ -0.3
YBX3-213ENST00000542641 MAFGO15525 162 aa13.16□□□□□ -0.3
YBX3-213ENST00000542641 FIBPO43427 364 aa13.16□□□□□ -0.3
YBX3-213ENST00000542641 ZNF865P0CJ78 1059 aaPredicted RBP13.16□□□□□ -0.3
YBX3-213ENST00000542641 CYBAP13498 195 aa13.16□□□□□ -0.3
YBX3-213ENST00000542641 CNGA1P29973 690 aa13.16□□□□□ -0.3
YBX3-213ENST00000542641 CCDC144BQ3MJ40 725 aa13.16□□□□□ -0.3
YBX3-213ENST00000542641 TTC38Q5R3I4 469 aa13.16□□□□□ -0.3
YBX3-213ENST00000542641 MAP3K21Q5TCX8 1036 aa13.16□□□□□ -0.3
YBX3-213ENST00000542641 IQSEC1Q6DN90 963 aa13.16□□□□□ -0.3
YBX3-213ENST00000542641 TAPT1Q6NXT6 567 aa13.16□□□□□ -0.3
YBX3-213ENST00000542641 FAM173BQ6P4H8 233 aa13.16□□□□□ -0.3
YBX3-213ENST00000542641 NIPA1Q7RTP0 329 aa13.16□□□□□ -0.3
YBX3-213ENST00000542641 SCFD2Q8WU76 684 aa13.16□□□□□ -0.3
YBX3-213ENST00000542641 GPRASP2Q96D09 838 aa13.16□□□□□ -0.3
YBX3-213ENST00000542641 CDHR1Q96JP9 859 aa13.16□□□□□ -0.3
YBX3-213ENST00000542641 KCNH7Q9NS40 1196 aa13.16□□□□□ -0.3
YBX3-213ENST00000542641 CHMP5Q9NZZ3 219 aa13.16□□□□□ -0.3
YBX3-213ENST00000542641 MRVI1Q9Y6F6 885 aa13.16□□□□□ -0.3
YBX3-213ENST00000542641 IGLV3-22A0A075B6J6 115 aa13.15□□□□□ -0.3
YBX3-213ENST00000542641 RBM47A0AV96 593 aaKnown RBP13.15□□□□□ -0.3
YBX3-213ENST00000542641 ARP10275 920 aa13.15□□□□□ -0.3
YBX3-213ENST00000542641 TXNP10599 105 aaKnown RBP13.15□□□□□ -0.3
YBX3-213ENST00000542641 TGFB3P10600 412 aa13.15□□□□□ -0.3
YBX3-213ENST00000542641 ICAM3P32942 547 aa13.15□□□□□ -0.3
YBX3-213ENST00000542641 MCM7P33993 719 aa13.15□□□□□ -0.3
YBX3-213ENST00000542641 ADCYAP1R1P41586 468 aa13.15□□□□□ -0.3
YBX3-213ENST00000542641 SETQ01105 290 aaPredicted RBP13.15□□□□□ -0.3
YBX3-213ENST00000542641 NBR1Q14596 966 aa13.15□□□□□ -0.3
YBX3-213ENST00000542641 TTLL4Q14679 1199 aa13.15□□□□□ -0.3
YBX3-213ENST00000542641 ZNF174Q15697 407 aa13.15□□□□□ -0.3
YBX3-213ENST00000542641 FOXD4L6Q3SYB3 417 aaPredicted RBP13.15□□□□□ -0.3
YBX3-213ENST00000542641 Q4G0T1 1027 aa13.15□□□□□ -0.3
YBX3-213ENST00000542641 KCNV1Q6PIU1 500 aa13.15□□□□□ -0.3
YBX3-213ENST00000542641 FOXD4L3Q6VB84 417 aaPredicted RBP13.15□□□□□ -0.3
YBX3-213ENST00000542641 TRPV1Q8NER1 839 aa13.15□□□□□ -0.3
YBX3-213ENST00000542641 MBOAT7Q96N66 472 aa13.15□□□□□ -0.3
YBX3-213ENST00000542641 HMX1Q9NP08 348 aaPredicted RBP13.15□□□□□ -0.3
YBX3-213ENST00000542641 FAM184BQ9ULE4 1060 aa13.15□□□□□ -0.3
YBX3-213ENST00000542641 PCDHB6Q9Y5E3 794 aa13.15□□□□□ -0.3
YBX3-213ENST00000542641 SLC37A4O43826 429 aa13.14□□□□□ -0.31
YBX3-213ENST00000542641 MARCH6O60337 910 aa13.14□□□□□ -0.31
YBX3-213ENST00000542641 NEMFO60524 1076 aa13.14□□□□□ -0.31
YBX3-213ENST00000542641 CCND3P30281 292 aaPredicted RBP13.14□□□□□ -0.31
YBX3-213ENST00000542641 TNFAIP2Q03169 654 aa13.14□□□□□ -0.31
YBX3-213ENST00000542641 ORC2Q13416 577 aaPredicted RBP13.14□□□□□ -0.31
YBX3-213ENST00000542641 LY6KQ17RY6 165 aa13.14□□□□□ -0.31
YBX3-213ENST00000542641 ZNF579Q8NAF0 562 aaKnown RBP13.14□□□□□ -0.31
YBX3-213ENST00000542641 LENG9Q96B70 501 aa13.14□□□□□ -0.31
YBX3-213ENST00000542641 ZNF396Q96N95 335 aaPredicted RBP13.14□□□□□ -0.31
YBX3-213ENST00000542641 UIMC1Q96RL1 719 aa13.14□□□□□ -0.31
YBX3-213ENST00000542641 ZNF577Q9BSK1 485 aa13.14□□□□□ -0.31
YBX3-213ENST00000542641 MCOLN1Q9GZU1 580 aa13.14□□□□□ -0.31
YBX3-213ENST00000542641 AGO4Q9HCK5 861 aaKnown RBP13.14□□□□□ -0.31
YBX3-213ENST00000542641 PKD2L1Q9P0L9 805 aa13.14□□□□□ -0.31
YBX3-213ENST00000542641 DDX41Q9UJV9 622 aaKnown RBP13.14□□□□□ -0.31
YBX3-213ENST00000542641 ATP6V1DQ9Y5K8 247 aa13.14□□□□□ -0.31
YBX3-213ENST00000542641 HTTP42858 3142 aa13.14□□□□□ -0.31
YBX3-213ENST00000542641 C11orf97A0A1B0GVM6 126 aaPredicted RBP13.13□□□□□ -0.31
YBX3-213ENST00000542641 IPO5O00410 1097 aaKnown RBP13.13□□□□□ -0.31
YBX3-213ENST00000542641 MSH4O15457 936 aa13.13□□□□□ -0.31
YBX3-213ENST00000542641 SEPT4O43236 478 aa13.13□□□□□ -0.31
YBX3-213ENST00000542641 ARIH2O95376 493 aa13.13□□□□□ -0.31
YBX3-213ENST00000542641 MYCP01106 439 aaPredicted RBP13.13□□□□□ -0.31
YBX3-213ENST00000542641 AKR1A1P14550 325 aa13.13□□□□□ -0.31
YBX3-213ENST00000542641 SMPD1P17405 629 aa13.13□□□□□ -0.31
YBX3-213ENST00000542641 CEBPZQ03701 1054 aaKnown RBP13.13□□□□□ -0.31
YBX3-213ENST00000542641 SEMA3FQ13275 785 aa13.13□□□□□ -0.31
YBX3-213ENST00000542641 CALCRLQ16602 461 aa13.13□□□□□ -0.31
YBX3-213ENST00000542641 CCDC62Q6P9F0 684 aa13.13□□□□□ -0.31
YBX3-213ENST00000542641 EIF4ENIF1Q9NRA8 985 aaKnown RBP13.13□□□□□ -0.31
YBX3-213ENST00000542641 TFIP11Q9UBB9 837 aaKnown RBP13.13□□□□□ -0.31
YBX3-213ENST00000542641 MYH7BA7E2Y1 1941 aa13.12□□□□□ -0.31
YBX3-213ENST00000542641 ATP9AO75110 1047 aa13.12□□□□□ -0.31
YBX3-213ENST00000542641 BAG4O95429 457 aaKnown RBP13.12□□□□□ -0.31
YBX3-213ENST00000542641 UBA1P22314 1058 aaKnown RBP13.12□□□□□ -0.31
YBX3-213ENST00000542641 SP2Q02086 613 aa13.12□□□□□ -0.31
YBX3-213ENST00000542641 PTGDRQ13258 359 aa13.12□□□□□ -0.31
YBX3-213ENST00000542641 NEDD9Q14511 834 aa13.12□□□□□ -0.31
YBX3-213ENST00000542641 SF3A1Q15459 793 aaKnown RBP13.12□□□□□ -0.31
YBX3-213ENST00000542641 DUSP28Q4G0W2 176 aa13.12□□□□□ -0.31
YBX3-213ENST00000542641 TMEM63BQ5T3F8 832 aa13.12□□□□□ -0.31
YBX3-213ENST00000542641 ANO1Q5XXA6 986 aa13.12□□□□□ -0.31
YBX3-213ENST00000542641 GIMAP8Q8ND71 665 aaPredicted RBP13.12□□□□□ -0.31
YBX3-213ENST00000542641 ARMC5Q96C12 935 aa13.12□□□□□ -0.31
YBX3-213ENST00000542641 SENP7Q9BQF6 1050 aa13.12□□□□□ -0.31
YBX3-213ENST00000542641 SDF4Q9BRK5 362 aa13.12□□□□□ -0.31
YBX3-213ENST00000542641 UNC93B1Q9H1C4 597 aa13.12□□□□□ -0.31
YBX3-213ENST00000542641 KCNMB3Q9NPA1 279 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 58.4 ms