RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 IQSEC1Q6DN90 963 aa16.99■□□□□ 0.31
NUP54-213ENST00000513352 CRYGNQ8WXF5 182 aa16.99■□□□□ 0.31
NUP54-213ENST00000513352 ARMC5Q96C12 935 aa16.99■□□□□ 0.31
NUP54-213ENST00000513352 ZNF333Q96JL9 665 aa16.99■□□□□ 0.31
NUP54-213ENST00000513352 CDHR1Q96JP9 859 aa16.99■□□□□ 0.31
NUP54-213ENST00000513352 IPO9Q96P70 1041 aaKnown RBP16.99■□□□□ 0.31
NUP54-213ENST00000513352 DOCK5Q9H7D0 1870 aa16.99■□□□□ 0.31
NUP54-213ENST00000513352 ARIH2O95376 493 aa16.98■□□□□ 0.31
NUP54-213ENST00000513352 MYCNP04198 464 aaPredicted RBP16.98■□□□□ 0.31
NUP54-213ENST00000513352 RARBP10826 455 aa16.98■□□□□ 0.31
NUP54-213ENST00000513352 CIITAP33076 1130 aa16.98■□□□□ 0.31
NUP54-213ENST00000513352 MCM7P33993 719 aa16.98■□□□□ 0.31
NUP54-213ENST00000513352 NBR1Q14596 966 aa16.98■□□□□ 0.31
NUP54-213ENST00000513352 GJC2Q5T442 439 aaPredicted RBP16.98■□□□□ 0.31
NUP54-213ENST00000513352 KCNV1Q6PIU1 500 aa16.98■□□□□ 0.31
NUP54-213ENST00000513352 NIPA1Q7RTP0 329 aa16.98■□□□□ 0.31
NUP54-213ENST00000513352 DDX20Q9UHI6 824 aaKnown RBP16.98■□□□□ 0.31
NUP54-213ENST00000513352 MEIS1O00470 390 aa16.97■□□□□ 0.31
NUP54-213ENST00000513352 F13A1P00488 732 aa16.97■□□□□ 0.31
NUP54-213ENST00000513352 ARP10275 920 aa16.97■□□□□ 0.31
NUP54-213ENST00000513352 SMPD1P17405 629 aa16.97■□□□□ 0.31
NUP54-213ENST00000513352 TRAPPC10P48553 1259 aa16.97■□□□□ 0.31
NUP54-213ENST00000513352 SEMA3FQ13275 785 aa16.97■□□□□ 0.31
NUP54-213ENST00000513352 ZNF174Q15697 407 aa16.97■□□□□ 0.31
NUP54-213ENST00000513352 FOXD4L6Q3SYB3 417 aaPredicted RBP16.97■□□□□ 0.31
NUP54-213ENST00000513352 MOXD1Q6UVY6 613 aa16.97■□□□□ 0.31
NUP54-213ENST00000513352 FOXD4L3Q6VB84 417 aaPredicted RBP16.97■□□□□ 0.31
NUP54-213ENST00000513352 COPS5Q92905 334 aa16.97■□□□□ 0.31
NUP54-213ENST00000513352 ZNF577Q9BSK1 485 aa16.97■□□□□ 0.31
NUP54-213ENST00000513352 ZSCAN16Q9H4T2 348 aaPredicted RBP16.97■□□□□ 0.31
NUP54-213ENST00000513352 KCNH7Q9NS40 1196 aa16.97■□□□□ 0.31
NUP54-213ENST00000513352 MYH15Q9Y2K3 1946 aa16.97■□□□□ 0.31
NUP54-213ENST00000513352 FRMPD3Q5JV73 1810 aa16.96■□□□□ 0.31
NUP54-213ENST00000513352 IGLV3-22A0A075B6J6 115 aa16.96■□□□□ 0.31
NUP54-213ENST00000513352 RBM47A0AV96 593 aaKnown RBP16.96■□□□□ 0.31
NUP54-213ENST00000513352 SPATA31C2B4DYI2 1134 aa16.96■□□□□ 0.31
NUP54-213ENST00000513352 WNT7AO00755 349 aa16.96■□□□□ 0.31
NUP54-213ENST00000513352 ADCY6O43306 1168 aa16.96■□□□□ 0.31
NUP54-213ENST00000513352 SLC37A4O43826 429 aa16.96■□□□□ 0.31
NUP54-213ENST00000513352 EDIL3O43854 480 aa16.96■□□□□ 0.31
NUP54-213ENST00000513352 NEMFO60524 1076 aa16.96■□□□□ 0.31
NUP54-213ENST00000513352 MSCO60682 206 aa16.96■□□□□ 0.31
NUP54-213ENST00000513352 GGPS1O95749 300 aa16.96■□□□□ 0.31
NUP54-213ENST00000513352 UBA1P22314 1058 aaKnown RBP16.96■□□□□ 0.31
NUP54-213ENST00000513352 PTGS1P23219 599 aa16.96■□□□□ 0.31
NUP54-213ENST00000513352 ICAM3P32942 547 aa16.96■□□□□ 0.31
NUP54-213ENST00000513352 SP4Q02446 784 aa16.96■□□□□ 0.31
NUP54-213ENST00000513352 DUSP28Q4G0W2 176 aa16.96■□□□□ 0.31
NUP54-213ENST00000513352 RILPL1Q5EBL4 403 aa16.96■□□□□ 0.31
NUP54-213ENST00000513352 TMEM63BQ5T3F8 832 aa16.96■□□□□ 0.31
NUP54-213ENST00000513352 MYSM1Q5VVJ2 828 aa16.96■□□□□ 0.31
NUP54-213ENST00000513352 PPP4R3AQ6IN85 833 aa16.96■□□□□ 0.31
NUP54-213ENST00000513352 TLK2Q86UE8 772 aa16.96■□□□□ 0.31
NUP54-213ENST00000513352 DHX37Q8IY37 1157 aaKnown RBP16.96■□□□□ 0.31
NUP54-213ENST00000513352 OR6J1Q8NGC5 347 aa16.96■□□□□ 0.31
NUP54-213ENST00000513352 DEFB118Q96PH6 123 aa16.96■□□□□ 0.31
NUP54-213ENST00000513352 SDF4Q9BRK5 362 aa16.96■□□□□ 0.31
NUP54-213ENST00000513352 TMEM106CQ9BVX2 250 aa16.96■□□□□ 0.31
NUP54-213ENST00000513352 AP5M1Q9H0R1 490 aa16.96■□□□□ 0.31
NUP54-213ENST00000513352 TCEAL9Q9UHQ7 104 aa16.96■□□□□ 0.31
NUP54-213ENST00000513352 CYP3A7-CYP3A51PA0A087WV96 503 aa16.95■□□□□ 0.3
NUP54-213ENST00000513352 DDX39AO00148 427 aaKnown RBP16.95■□□□□ 0.3
NUP54-213ENST00000513352 NKRFO15226 690 aaKnown RBP eCLIP16.95■□□□□ 0.3
NUP54-213ENST00000513352 DYNC1LI2O43237 492 aaPredicted RBP16.95■□□□□ 0.3
NUP54-213ENST00000513352 GH1P01241 217 aa16.95■□□□□ 0.3
NUP54-213ENST00000513352 TGFB3P10600 412 aa16.95■□□□□ 0.3
NUP54-213ENST00000513352 CYP3A7P24462 503 aa16.95■□□□□ 0.3
NUP54-213ENST00000513352 NEDD9Q14511 834 aa16.95■□□□□ 0.3
NUP54-213ENST00000513352 CALCRLQ16602 461 aa16.95■□□□□ 0.3
NUP54-213ENST00000513352 Q4G0T1 1027 aa16.95■□□□□ 0.3
NUP54-213ENST00000513352 FAM173BQ6P4H8 233 aa16.95■□□□□ 0.3
NUP54-213ENST00000513352 CCDC62Q6P9F0 684 aa16.95■□□□□ 0.3
NUP54-213ENST00000513352 MLXIPQ9HAP2 919 aa16.95■□□□□ 0.3
NUP54-213ENST00000513352 SPC25Q9HBM1 224 aa16.95■□□□□ 0.3
NUP54-213ENST00000513352 AGO4Q9HCK5 861 aaKnown RBP16.95■□□□□ 0.3
NUP54-213ENST00000513352 XPNPEP3Q9NQH7 507 aa16.95■□□□□ 0.3
NUP54-213ENST00000513352 DDX41Q9UJV9 622 aaKnown RBP16.95■□□□□ 0.3
NUP54-213ENST00000513352 PCDHB6Q9Y5E3 794 aa16.95■□□□□ 0.3
NUP54-213ENST00000513352 IPO5O00410 1097 aaKnown RBP16.94■□□□□ 0.3
NUP54-213ENST00000513352 MSH4O15457 936 aa16.94■□□□□ 0.3
NUP54-213ENST00000513352 MAFGO15525 162 aa16.94■□□□□ 0.3
NUP54-213ENST00000513352 DUSP11O75319 330 aaKnown RBP16.94■□□□□ 0.3
NUP54-213ENST00000513352 BAG4O95429 457 aaKnown RBP16.94■□□□□ 0.3
NUP54-213ENST00000513352 BRD1O95696 1058 aa16.94■□□□□ 0.3
NUP54-213ENST00000513352 PGK1P00558 417 aa16.94■□□□□ 0.3
NUP54-213ENST00000513352 TOB1P50616 345 aaPredicted RBP16.94■□□□□ 0.3
NUP54-213ENST00000513352 NUCB2P80303 420 aa16.94■□□□□ 0.3
NUP54-213ENST00000513352 SP2Q02086 613 aa16.94■□□□□ 0.3
NUP54-213ENST00000513352 CYFIP1Q7L576 1253 aa16.94■□□□□ 0.3
NUP54-213ENST00000513352 TNS4Q8IZW8 715 aa16.94■□□□□ 0.3
NUP54-213ENST00000513352 GIMAP8Q8ND71 665 aaPredicted RBP16.94■□□□□ 0.3
NUP54-213ENST00000513352 LENG9Q96B70 501 aa16.94■□□□□ 0.3
NUP54-213ENST00000513352 PAK6Q9NQU5 681 aaPredicted RBP16.94■□□□□ 0.3
NUP54-213ENST00000513352 NOP56O00567 594 aaKnown RBP16.93■□□□□ 0.3
NUP54-213ENST00000513352 GAS7O60861 476 aa16.93■□□□□ 0.3
NUP54-213ENST00000513352 ATP9AO75110 1047 aa16.93■□□□□ 0.3
NUP54-213ENST00000513352 C6orf222P0C671 652 aaPredicted RBP16.93■□□□□ 0.3
NUP54-213ENST00000513352 KCNA2P16389 499 aa16.93■□□□□ 0.3
NUP54-213ENST00000513352 CEBPZQ03701 1054 aaKnown RBP16.93■□□□□ 0.3
NUP54-213ENST00000513352 CELF3Q5SZQ8 465 aaKnown RBP16.93■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms