RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 DSG3P32926 999 aa9.7□□□□□ -0.86
LIMCH1-209ENST00000509277 TOB1P50616 345 aaPredicted RBP9.7□□□□□ -0.86
LIMCH1-209ENST00000509277 GNG11P61952 73 aa9.7□□□□□ -0.86
LIMCH1-209ENST00000509277 KARSQ15046 597 aaKnown RBP9.7□□□□□ -0.86
LIMCH1-209ENST00000509277 SPRYD7Q5W111 196 aa9.7□□□□□ -0.86
LIMCH1-209ENST00000509277 KRT25Q7Z3Z0 450 aa9.7□□□□□ -0.86
LIMCH1-209ENST00000509277 POTEDQ86YR6 584 aa9.7□□□□□ -0.86
LIMCH1-209ENST00000509277 MAP3K14Q99558 947 aa9.7□□□□□ -0.86
LIMCH1-209ENST00000509277 ZNF446Q9NWS9 450 aa9.7□□□□□ -0.86
LIMCH1-209ENST00000509277 BTBD7Q9P203 1132 aa9.7□□□□□ -0.86
LIMCH1-209ENST00000509277 PCDHA7Q9UN72 937 aa9.7□□□□□ -0.86
LIMCH1-209ENST00000509277 FOCADQ5VW36 1801 aa9.7□□□□□ -0.86
LIMCH1-209ENST00000509277 TMEM88BA6NKF7 163 aa9.7□□□□□ -0.86
LIMCH1-209ENST00000509277 NR1I2O75469 434 aa9.7□□□□□ -0.86
LIMCH1-209ENST00000509277 RHOXF2BP0C7M4 288 aa9.7□□□□□ -0.86
LIMCH1-209ENST00000509277 ERCC3P19447 782 aa9.7□□□□□ -0.86
LIMCH1-209ENST00000509277 CNTN2Q02246 1040 aa9.7□□□□□ -0.86
LIMCH1-209ENST00000509277 Q3C1V9 767 aa9.7□□□□□ -0.86
LIMCH1-209ENST00000509277 SAPCD2Q86UD0 394 aa9.7□□□□□ -0.86
LIMCH1-209ENST00000509277 TAAR1Q96RJ0 339 aa9.7□□□□□ -0.86
LIMCH1-209ENST00000509277 RMDN3Q96TC7 470 aa9.7□□□□□ -0.86
LIMCH1-209ENST00000509277 RHOXF2Q9BQY4 288 aa9.7□□□□□ -0.86
LIMCH1-209ENST00000509277 TEX13BQ9BXU2 312 aa9.7□□□□□ -0.86
LIMCH1-209ENST00000509277 TXNRD2Q9NNW7 524 aa9.7□□□□□ -0.86
LIMCH1-209ENST00000509277 BMP2KQ9NSY1 1161 aaPredicted RBP9.7□□□□□ -0.86
LIMCH1-209ENST00000509277 KCNG1Q9UIX4 513 aa9.7□□□□□ -0.86
LIMCH1-209ENST00000509277 AFMP43652 599 aa9.7□□□□□ -0.86
LIMCH1-209ENST00000509277 GTF2A2P52657 109 aa9.7□□□□□ -0.86
LIMCH1-209ENST00000509277 PABPC4Q13310 644 aaKnown RBP eCLIP9.7□□□□□ -0.86
LIMCH1-209ENST00000509277 PPP2R5AQ15172 486 aa9.7□□□□□ -0.86
LIMCH1-209ENST00000509277 USP49Q70CQ1 688 aa9.7□□□□□ -0.86
LIMCH1-209ENST00000509277 DHX58Q96C10 678 aa9.7□□□□□ -0.86
LIMCH1-209ENST00000509277 ZMYND12Q9H0C1 365 aa9.7□□□□□ -0.86
LIMCH1-209ENST00000509277 TMEM60Q9H2L4 133 aa9.7□□□□□ -0.86
LIMCH1-209ENST00000509277 SLC24A3Q9HC58 644 aa9.7□□□□□ -0.86
LIMCH1-209ENST00000509277 NEMFO60524 1076 aa9.69□□□□□ -0.86
LIMCH1-209ENST00000509277 NT5C2P49902 561 aa9.69□□□□□ -0.86
LIMCH1-209ENST00000509277 TTC19Q6DKK2 380 aaPredicted RBP9.69□□□□□ -0.86
LIMCH1-209ENST00000509277 SEPT14Q6ZU15 432 aa9.69□□□□□ -0.86
LIMCH1-209ENST00000509277 JMYQ8N9B5 988 aa9.69□□□□□ -0.86
LIMCH1-209ENST00000509277 FAM107BQ9H098 131 aa9.69□□□□□ -0.86
LIMCH1-209ENST00000509277 ZHX3Q9H4I2 956 aa9.69□□□□□ -0.86
LIMCH1-209ENST00000509277 SLC38A10Q9HBR0 1119 aa9.69□□□□□ -0.86
LIMCH1-209ENST00000509277 AGTPBP1Q9UPW5 1226 aa9.69□□□□□ -0.86
LIMCH1-209ENST00000509277 CXCL11O14625 94 aa9.69□□□□□ -0.86
LIMCH1-209ENST00000509277 KINO60870 393 aaKnown RBP9.69□□□□□ -0.86
LIMCH1-209ENST00000509277 TRPA1O75762 1119 aa9.69□□□□□ -0.86
LIMCH1-209ENST00000509277 ICAM1P05362 532 aa9.69□□□□□ -0.86
LIMCH1-209ENST00000509277 ARHGAP4P98171 946 aa9.69□□□□□ -0.86
LIMCH1-209ENST00000509277 CYP4A11Q02928 519 aa9.69□□□□□ -0.86
LIMCH1-209ENST00000509277 CALCRLQ16602 461 aa9.69□□□□□ -0.86
LIMCH1-209ENST00000509277 LDLRAD1Q5T700 205 aa9.69□□□□□ -0.86
LIMCH1-209ENST00000509277 LRRC8AQ8IWT6 810 aa9.69□□□□□ -0.86
LIMCH1-209ENST00000509277 LINC00301Q8NCQ3 95 aa9.69□□□□□ -0.86
LIMCH1-209ENST00000509277 CPLX3Q8WVH0 158 aa9.69□□□□□ -0.86
LIMCH1-209ENST00000509277 EPSTI1Q96J88 318 aa9.69□□□□□ -0.86
LIMCH1-209ENST00000509277 PORCNQ9H237 461 aa9.69□□□□□ -0.86
LIMCH1-209ENST00000509277 POLD4Q9HCU8 107 aa9.69□□□□□ -0.86
LIMCH1-209ENST00000509277 RIC8AQ9NPQ8 531 aa9.69□□□□□ -0.86
LIMCH1-209ENST00000509277 DDX25Q9UHL0 483 aaKnown RBP9.69□□□□□ -0.86
LIMCH1-209ENST00000509277 KCTD2Q14681 263 aa9.69□□□□□ -0.86
LIMCH1-209ENST00000509277 NPY5RQ15761 445 aa9.69□□□□□ -0.86
LIMCH1-209ENST00000509277 NOL9Q5SY16 702 aaKnown RBP9.69□□□□□ -0.86
LIMCH1-209ENST00000509277 NCAPH2Q6IBW4 605 aa9.69□□□□□ -0.86
LIMCH1-209ENST00000509277 CDK5RAP3Q96JB5 506 aa9.69□□□□□ -0.86
LIMCH1-209ENST00000509277 CSRNP2Q9H175 543 aa9.69□□□□□ -0.86
LIMCH1-209ENST00000509277 ARFGAP3Q9NP61 516 aa9.69□□□□□ -0.86
LIMCH1-209ENST00000509277 ZKSCAN7Q9P0L1 754 aaPredicted RBP9.69□□□□□ -0.86
LIMCH1-209ENST00000509277 CEP131Q9UPN4 1083 aa9.69□□□□□ -0.86
LIMCH1-209ENST00000509277 A0A0G2JLL6 359 aaPredicted RBP9.68□□□□□ -0.86
LIMCH1-209ENST00000509277 POTEMA6NI47 508 aa9.68□□□□□ -0.86
LIMCH1-209ENST00000509277 POTEB2H3BUK9 544 aa9.68□□□□□ -0.86
LIMCH1-209ENST00000509277 SLC37A4O43826 429 aa9.68□□□□□ -0.86
LIMCH1-209ENST00000509277 SERPINC1P01008 464 aa9.68□□□□□ -0.86
LIMCH1-209ENST00000509277 DEFB115Q30KQ5 88 aa9.68□□□□□ -0.86
LIMCH1-209ENST00000509277 PRRT2Q7Z6L0 340 aaPredicted RBP9.68□□□□□ -0.86
LIMCH1-209ENST00000509277 DPP9Q86TI2 863 aa9.68□□□□□ -0.86
LIMCH1-209ENST00000509277 SPATC1LQ9H0A9 340 aa9.68□□□□□ -0.86
LIMCH1-209ENST00000509277 RANBP17Q9H2T7 1088 aaKnown RBP9.68□□□□□ -0.86
LIMCH1-209ENST00000509277 COL2A1P02458 1487 aaPredicted RBP9.68□□□□□ -0.86
LIMCH1-209ENST00000509277 UBA7P41226 1012 aa9.68□□□□□ -0.86
LIMCH1-209ENST00000509277 NOVP48745 357 aa9.68□□□□□ -0.86
LIMCH1-209ENST00000509277 DTHD1Q6ZMT9 781 aa9.68□□□□□ -0.86
LIMCH1-209ENST00000509277 CLEC17AQ6ZS10 378 aa9.68□□□□□ -0.86
LIMCH1-209ENST00000509277 GRAMD1CQ8IYS0 662 aa9.68□□□□□ -0.86
LIMCH1-209ENST00000509277 KRI1Q8N9T8 703 aaKnown RBP9.68□□□□□ -0.86
LIMCH1-209ENST00000509277 IL31RAQ8NI17 732 aa9.68□□□□□ -0.86
LIMCH1-209ENST00000509277 SH2D3AQ9BRG2 576 aa9.68□□□□□ -0.86
LIMCH1-209ENST00000509277 MOV10L1Q9BXT6 1211 aaKnown RBP9.68□□□□□ -0.86
LIMCH1-209ENST00000509277 ACAD9Q9H845 621 aa9.68□□□□□ -0.86
LIMCH1-209ENST00000509277 IFNKQ9P0W0 207 aa9.68□□□□□ -0.86
LIMCH1-209ENST00000509277 PNMA3Q9UL41 463 aa9.68□□□□□ -0.86
LIMCH1-209ENST00000509277 MEIS2O14770 477 aa9.68□□□□□ -0.86
LIMCH1-209ENST00000509277 ATP2C2O75185 946 aa9.68□□□□□ -0.86
LIMCH1-209ENST00000509277 TBC1D8O95759 1140 aa9.68□□□□□ -0.86
LIMCH1-209ENST00000509277 PLA2G4AP47712 749 aa9.68□□□□□ -0.86
LIMCH1-209ENST00000509277 PLA2G4DQ86XP0 818 aa9.68□□□□□ -0.86
LIMCH1-209ENST00000509277 KCNG4Q8TDN1 519 aa9.68□□□□□ -0.86
LIMCH1-209ENST00000509277 PTPN18Q99952 460 aa9.68□□□□□ -0.86
LIMCH1-209ENST00000509277 IGF2BP3O00425 579 aaKnown RBP eCLIP9.67□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 59.4 ms