RNA–Protein interactions for RNA: ENST00000416651.5

NIF3L1-206, Transcript of NGG1 interacting factor 3 like 1, human

TSL 2 BASIC

Gene NIF3L1, Length 967 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NIF3L1-206	ENST00000416651	MUM1L1	Q5H9M0	696 aa		10.4	□□□□□ -0.74
NIF3L1-206	ENST00000416651	C12orf60	Q5U649	245 aa		10.4	□□□□□ -0.74
NIF3L1-206	ENST00000416651	KIAA1211	Q6ZU35	1233 aa		10.4	□□□□□ -0.74
NIF3L1-206	ENST00000416651	EDA	Q92838	391 aa		10.4	□□□□□ -0.74
NIF3L1-206	ENST00000416651	WNT8B	Q93098	351 aa		10.4	□□□□□ -0.74
NIF3L1-206	ENST00000416651	RAD9A	Q99638	391 aa		10.4	□□□□□ -0.74
NIF3L1-206	ENST00000416651	CRNKL1	Q9BZJ0	848 aa	Known RBP	10.4	□□□□□ -0.74
NIF3L1-206	ENST00000416651	SH2D4A	Q9H788	454 aa		10.4	□□□□□ -0.74
NIF3L1-206	ENST00000416651	TLR9	Q9NR96	1032 aa		10.4	□□□□□ -0.74
NIF3L1-206	ENST00000416651	CLDND1	Q9NY35	253 aa		10.4	□□□□□ -0.74
NIF3L1-206	ENST00000416651	NXF1	Q9UBU9	619 aa	Known RBP	10.4	□□□□□ -0.74
NIF3L1-206	ENST00000416651	GREB1L	Q9C091	1923 aa	Predicted RBP	10.4	□□□□□ -0.74
NIF3L1-206	ENST00000416651	CACNA1B	Q00975	2339 aa		10.4	□□□□□ -0.74
NIF3L1-206	ENST00000416651	MED19	A0JLT2	244 aa	Predicted RBP	10.39	□□□□□ -0.75
NIF3L1-206	ENST00000416651	ATP2A1	O14983	1001 aa		10.39	□□□□□ -0.75
NIF3L1-206	ENST00000416651	MBTPS2	O43462	519 aa		10.39	□□□□□ -0.75
NIF3L1-206	ENST00000416651	DXO	O77932	396 aa	Known RBP	10.39	□□□□□ -0.75
NIF3L1-206	ENST00000416651	RFC2	P35250	354 aa		10.39	□□□□□ -0.75
NIF3L1-206	ENST00000416651	MBTPS1	Q14703	1052 aa		10.39	□□□□□ -0.75
NIF3L1-206	ENST00000416651	COL19A1	Q14993	1142 aa		10.39	□□□□□ -0.75
NIF3L1-206	ENST00000416651	SLC9C2	Q5TAH2	1124 aa		10.39	□□□□□ -0.75
NIF3L1-206	ENST00000416651	C16orf86	Q6ZW13	317 aa		10.39	□□□□□ -0.75
NIF3L1-206	ENST00000416651	RPAIN	Q86UA6	219 aa		10.39	□□□□□ -0.75
NIF3L1-206	ENST00000416651	PRPF38A	Q8NAV1	312 aa	Known RBP	10.39	□□□□□ -0.75
NIF3L1-206	ENST00000416651	RETREG2	Q8NC44	543 aa		10.39	□□□□□ -0.75
NIF3L1-206	ENST00000416651	BANK1	Q8NDB2	785 aa		10.39	□□□□□ -0.75
NIF3L1-206	ENST00000416651	ATOH1	Q92858	354 aa	Predicted RBP	10.39	□□□□□ -0.75
NIF3L1-206	ENST00000416651	PABPC5	Q96DU9	382 aa	Known RBP	10.39	□□□□□ -0.75
NIF3L1-206	ENST00000416651	MRPL38	Q96DV4	380 aa	Known RBP	10.39	□□□□□ -0.75
NIF3L1-206	ENST00000416651	KANSL2	Q9H9L4	492 aa		10.39	□□□□□ -0.75
NIF3L1-206	ENST00000416651	GOPC	Q9HD26	462 aa		10.39	□□□□□ -0.75
NIF3L1-206	ENST00000416651	FAM217B	Q9NTX9	383 aa	Predicted RBP	10.39	□□□□□ -0.75
NIF3L1-206	ENST00000416651	SWAP70	Q9UH65	585 aa		10.39	□□□□□ -0.75
NIF3L1-206	ENST00000416651	CACNA1G	O43497	2377 aa		10.38	□□□□□ -0.75
NIF3L1-206	ENST00000416651	HOXA2	O43364	376 aa		10.38	□□□□□ -0.75
NIF3L1-206	ENST00000416651	ZEB2	O60315	1214 aa		10.38	□□□□□ -0.75
NIF3L1-206	ENST00000416651	ZBED4	O75132	1171 aa		10.38	□□□□□ -0.75
NIF3L1-206	ENST00000416651	LGR5	O75473	907 aa		10.38	□□□□□ -0.75
NIF3L1-206	ENST00000416651	SURF6	O75683	361 aa	Known RBP	10.38	□□□□□ -0.75
NIF3L1-206	ENST00000416651	BAIAP3	O94812	1187 aa		10.38	□□□□□ -0.75
NIF3L1-206	ENST00000416651	MBD4	O95243	580 aa		10.38	□□□□□ -0.75
NIF3L1-206	ENST00000416651	GNAI3	P08754	354 aa		10.38	□□□□□ -0.75
NIF3L1-206	ENST00000416651	SUPT20HL2	P0C7V6	817 aa		10.38	□□□□□ -0.75
NIF3L1-206	ENST00000416651	GMPR	P36959	345 aa		10.38	□□□□□ -0.75
NIF3L1-206	ENST00000416651	FOXK2	Q01167	660 aa		10.38	□□□□□ -0.75
NIF3L1-206	ENST00000416651	OS9	Q13438	667 aa	Predicted RBP	10.38	□□□□□ -0.75
NIF3L1-206	ENST00000416651	SMAD2	Q15796	467 aa	Known RBP	10.38	□□□□□ -0.75
NIF3L1-206	ENST00000416651	EPC2	Q52LR7	807 aa		10.38	□□□□□ -0.75
NIF3L1-206	ENST00000416651	IQSEC1	Q6DN90	963 aa		10.38	□□□□□ -0.75
NIF3L1-206	ENST00000416651	GDF6	Q6KF10	455 aa	Predicted RBP	10.38	□□□□□ -0.75
NIF3L1-206	ENST00000416651	BMP8A	Q7Z5Y6	402 aa		10.38	□□□□□ -0.75
NIF3L1-206	ENST00000416651	CHST13	Q8NET6	341 aa		10.38	□□□□□ -0.75
NIF3L1-206	ENST00000416651	API5	Q9BZZ5	524 aa	Known RBP	10.38	□□□□□ -0.75
NIF3L1-206	ENST00000416651	RNF146	Q9NTX7	359 aa		10.38	□□□□□ -0.75
NIF3L1-206	ENST00000416651	PRKAG3	Q9UGI9	489 aa		10.38	□□□□□ -0.75
NIF3L1-206	ENST00000416651	FAM186A	A6NE01	2351 aa		10.38	□□□□□ -0.75
NIF3L1-206	ENST00000416651	TBX10	O75333	385 aa		10.37	□□□□□ -0.75
NIF3L1-206	ENST00000416651	GNAI2	P04899	355 aa		10.37	□□□□□ -0.75
NIF3L1-206	ENST00000416651	RASA1	P20936	1047 aa		10.37	□□□□□ -0.75
NIF3L1-206	ENST00000416651	SKOR1	P84550	965 aa		10.37	□□□□□ -0.75
NIF3L1-206	ENST00000416651	HYAL1	Q12794	435 aa		10.37	□□□□□ -0.75
NIF3L1-206	ENST00000416651	GPM6B	Q13491	265 aa		10.37	□□□□□ -0.75
NIF3L1-206	ENST00000416651	DUSP28	Q4G0W2	176 aa		10.37	□□□□□ -0.75
NIF3L1-206	ENST00000416651	CTR9	Q6PD62	1173 aa		10.37	□□□□□ -0.75
NIF3L1-206	ENST00000416651	LRRC47	Q8N1G4	583 aa	Known RBP	10.37	□□□□□ -0.75
NIF3L1-206	ENST00000416651	FBXL6	Q8N531	539 aa		10.37	□□□□□ -0.75
NIF3L1-206	ENST00000416651	CCDC17	Q96LX7	622 aa		10.37	□□□□□ -0.75
NIF3L1-206	ENST00000416651	MTG1	Q9BT17	334 aa	Predicted RBP	10.37	□□□□□ -0.75
NIF3L1-206	ENST00000416651	CLIP2	Q9UDT6	1046 aa		10.37	□□□□□ -0.75
NIF3L1-206	ENST00000416651	CXCL10	P02778	98 aa		10.36	□□□□□ -0.75
NIF3L1-206	ENST00000416651	ALAS1	P13196	640 aa		10.36	□□□□□ -0.75
NIF3L1-206	ENST00000416651	WNT7B	P56706	349 aa		10.36	□□□□□ -0.75
NIF3L1-206	ENST00000416651	ZXDA	P98168	799 aa		10.36	□□□□□ -0.75
NIF3L1-206	ENST00000416651	ZNF200	P98182	395 aa	Predicted RBP	10.36	□□□□□ -0.75
NIF3L1-206	ENST00000416651	PTGIS	Q16647	500 aa		10.36	□□□□□ -0.75
NIF3L1-206	ENST00000416651	CNKSR3	Q6P9H4	555 aa		10.36	□□□□□ -0.75
NIF3L1-206	ENST00000416651	ZSCAN1	Q8NBB4	408 aa		10.36	□□□□□ -0.75
NIF3L1-206	ENST00000416651	OR6J1	Q8NGC5	347 aa		10.36	□□□□□ -0.75
NIF3L1-206	ENST00000416651	SSH3	Q8TE77	659 aa		10.36	□□□□□ -0.75
NIF3L1-206	ENST00000416651	CLUAP1	Q96AJ1	413 aa		10.36	□□□□□ -0.75
NIF3L1-206	ENST00000416651	WDR11	Q9BZH6	1224 aa		10.36	□□□□□ -0.75
NIF3L1-206	ENST00000416651	ACAD9	Q9H845	621 aa		10.36	□□□□□ -0.75
NIF3L1-206	ENST00000416651	POLR3E	Q9NVU0	708 aa		10.36	□□□□□ -0.75
NIF3L1-206	ENST00000416651	COG6	Q9Y2V7	657 aa		10.36	□□□□□ -0.75
NIF3L1-206	ENST00000416651		Q9Y3F1	56 aa		10.36	□□□□□ -0.75
NIF3L1-206	ENST00000416651	NCOR2	Q9Y618	2525 aa		10.36	□□□□□ -0.75
NIF3L1-206	ENST00000416651	KMT2B	Q9UMN6	2715 aa	Predicted RBP	10.35	□□□□□ -0.75
NIF3L1-206	ENST00000416651	EPG5	Q9HCE0	2579 aa		10.35	□□□□□ -0.75
NIF3L1-206	ENST00000416651	GVINP1	Q7Z2Y8	2422 aa		10.35	□□□□□ -0.75
NIF3L1-206	ENST00000416651	MYH4	Q9Y623	1939 aa		10.35	□□□□□ -0.75
NIF3L1-206	ENST00000416651	IGKV6D-41	A0A0C4DH26	115 aa		10.35	□□□□□ -0.75
NIF3L1-206	ENST00000416651	PRR23A	A6NEV1	266 aa		10.35	□□□□□ -0.75
NIF3L1-206	ENST00000416651	ASB14	A6NK59	587 aa		10.35	□□□□□ -0.75
NIF3L1-206	ENST00000416651	STXBP3	O00186	592 aa		10.35	□□□□□ -0.75
NIF3L1-206	ENST00000416651	GOLIM4	O00461	696 aa		10.35	□□□□□ -0.75
NIF3L1-206	ENST00000416651	ARIH2	O95376	493 aa		10.35	□□□□□ -0.75
NIF3L1-206	ENST00000416651	LOR	P23490	312 aa	Predicted RBP	10.35	□□□□□ -0.75
NIF3L1-206	ENST00000416651	AVPR2	P30518	371 aa		10.35	□□□□□ -0.75
NIF3L1-206	ENST00000416651	ATP8B2	P98198	1209 aa		10.35	□□□□□ -0.75
NIF3L1-206	ENST00000416651	LRRC8D	Q7L1W4	858 aa		10.35	□□□□□ -0.75

Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms