RNA–Protein interactions for RNA: ENST00000414419.6

RFFL-204, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 4

Gene RFFL, Length 559 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-204ENST00000414419 TRPV6Q9H1D0 765 aa12.86□□□□□ -0.35
RFFL-204ENST00000414419 ALDH8A1Q9H2A2 487 aaPredicted RBP12.86□□□□□ -0.35
RFFL-204ENST00000414419 HIPK3Q9H422 1215 aa12.86□□□□□ -0.35
RFFL-204ENST00000414419 FAM217BQ9NTX9 383 aaPredicted RBP12.86□□□□□ -0.35
RFFL-204ENST00000414419 NOD1Q9Y239 953 aa12.86□□□□□ -0.35
RFFL-204ENST00000414419 TRIP12Q14669 1992 aaPredicted RBP12.86□□□□□ -0.35
RFFL-204ENST00000414419 SMCO2A6NFE2 343 aa12.85□□□□□ -0.35
RFFL-204ENST00000414419 NOP56O00567 594 aaKnown RBP12.85□□□□□ -0.35
RFFL-204ENST00000414419 FIBPO43427 364 aa12.85□□□□□ -0.35
RFFL-204ENST00000414419 PPFIA4O75335 1185 aa12.85□□□□□ -0.35
RFFL-204ENST00000414419 UBA1P22314 1058 aaKnown RBP12.85□□□□□ -0.35
RFFL-204ENST00000414419 PTPN11Q06124 597 aaPredicted RBP12.85□□□□□ -0.35
RFFL-204ENST00000414419 FUT2Q10981 343 aa12.85□□□□□ -0.35
RFFL-204ENST00000414419 PPIGQ13427 754 aaKnown RBP eCLIP12.85□□□□□ -0.35
RFFL-204ENST00000414419 SHHQ15465 462 aa12.85□□□□□ -0.35
RFFL-204ENST00000414419 TEX2Q8IWB9 1127 aa12.85□□□□□ -0.35
RFFL-204ENST00000414419 CCDC12Q8WUD4 166 aaPredicted RBP12.85□□□□□ -0.35
RFFL-204ENST00000414419 CDHR1Q96JP9 859 aa12.85□□□□□ -0.35
RFFL-204ENST00000414419 INPP4AQ96PE3 977 aaPredicted RBP12.85□□□□□ -0.35
RFFL-204ENST00000414419 RIC8AQ9NPQ8 531 aa12.85□□□□□ -0.35
RFFL-204ENST00000414419 PDRG1Q9NUG6 133 aa12.85□□□□□ -0.35
RFFL-204ENST00000414419 TRMT13Q9NUP7 481 aaKnown RBP12.85□□□□□ -0.35
RFFL-204ENST00000414419 BARHL2Q9NY43 387 aa12.85□□□□□ -0.35
RFFL-204ENST00000414419 PCDHA6Q9UN73 950 aa12.85□□□□□ -0.35
RFFL-204ENST00000414419 PCDHA8Q9Y5H6 950 aa12.85□□□□□ -0.35
RFFL-204ENST00000414419 STXBP3O00186 592 aa12.84□□□□□ -0.35
RFFL-204ENST00000414419 SOX1O00570 391 aaPredicted RBP12.84□□□□□ -0.35
RFFL-204ENST00000414419 FOSP01100 380 aaPredicted RBP12.84□□□□□ -0.35
RFFL-204ENST00000414419 SCG2P13521 617 aa12.84□□□□□ -0.35
RFFL-204ENST00000414419 PDIA3P30101 505 aaKnown RBP12.84□□□□□ -0.35
RFFL-204ENST00000414419 ICAM3P32942 547 aa12.84□□□□□ -0.35
RFFL-204ENST00000414419 CYP2C18P33260 490 aa12.84□□□□□ -0.35
RFFL-204ENST00000414419 CCT2P78371 535 aaKnown RBP12.84□□□□□ -0.35
RFFL-204ENST00000414419 SP2Q02086 613 aa12.84□□□□□ -0.35
RFFL-204ENST00000414419 PFKFB3Q16875 520 aaPredicted RBP12.84□□□□□ -0.35
RFFL-204ENST00000414419 C9orf50Q5SZB4 431 aa12.84□□□□□ -0.35
RFFL-204ENST00000414419 C7orf31Q8N865 590 aa12.84□□□□□ -0.35
RFFL-204ENST00000414419 GIMAP8Q8ND71 665 aaPredicted RBP12.84□□□□□ -0.35
RFFL-204ENST00000414419 LRCH3Q96II8 777 aa12.84□□□□□ -0.35
RFFL-204ENST00000414419 ALG1Q9BT22 464 aa12.84□□□□□ -0.35
RFFL-204ENST00000414419 UPF3BQ9BZI7 483 aaKnown RBP12.84□□□□□ -0.35
RFFL-204ENST00000414419 SPATA31C2B4DYI2 1134 aa12.83□□□□□ -0.36
RFFL-204ENST00000414419 CPLX1O14810 134 aa12.83□□□□□ -0.36
RFFL-204ENST00000414419 PRPF3O43395 683 aaKnown RBP12.83□□□□□ -0.36
RFFL-204ENST00000414419 ZNF286BP0CG31 522 aa12.83□□□□□ -0.36
RFFL-204ENST00000414419 CSF2RAP15509 400 aa12.83□□□□□ -0.36
RFFL-204ENST00000414419 PSEN2P49810 448 aa12.83□□□□□ -0.36
RFFL-204ENST00000414419 CCL23P55773 120 aa12.83□□□□□ -0.36
RFFL-204ENST00000414419 EVCP57679 992 aa12.83□□□□□ -0.36
RFFL-204ENST00000414419 TOB2Q14106 344 aaPredicted RBP12.83□□□□□ -0.36
RFFL-204ENST00000414419 MFSD10Q14728 455 aa12.83□□□□□ -0.36
RFFL-204ENST00000414419 PTGISQ16647 500 aa12.83□□□□□ -0.36
RFFL-204ENST00000414419 HSDL1Q3SXM5 330 aa12.83□□□□□ -0.36
RFFL-204ENST00000414419 CPLX2Q6PUV4 134 aaKnown RBP12.83□□□□□ -0.36
RFFL-204ENST00000414419 METTL7BQ6UX53 244 aa12.83□□□□□ -0.36
RFFL-204ENST00000414419 CYFIP1Q7L576 1253 aa12.83□□□□□ -0.36
RFFL-204ENST00000414419 TRIM22Q8IYM9 498 aa12.83□□□□□ -0.36
RFFL-204ENST00000414419 RETREG2Q8NC44 543 aa12.83□□□□□ -0.36
RFFL-204ENST00000414419 PPP1R13LQ8WUF5 828 aa12.83□□□□□ -0.36
RFFL-204ENST00000414419 PHKBQ93100 1093 aa12.83□□□□□ -0.36
RFFL-204ENST00000414419 GPRASP2Q96D09 838 aa12.83□□□□□ -0.36
RFFL-204ENST00000414419 RNPC3Q96LT9 517 aaKnown RBP12.83□□□□□ -0.36
RFFL-204ENST00000414419 NOC4LQ9BVI4 516 aaKnown RBP12.83□□□□□ -0.36
RFFL-204ENST00000414419 SLC26A6Q9BXS9 759 aa12.83□□□□□ -0.36
RFFL-204ENST00000414419 C6orf50Q9HD87 102 aa12.83□□□□□ -0.36
RFFL-204ENST00000414419 NID2Q14112 1375 aa12.82□□□□□ -0.36
RFFL-204ENST00000414419 MAFGO15525 162 aa12.82□□□□□ -0.36
RFFL-204ENST00000414419 CYP2C9P11712 490 aa12.82□□□□□ -0.36
RFFL-204ENST00000414419 ANAPC15P60006 121 aa12.82□□□□□ -0.36
RFFL-204ENST00000414419 AP3B2Q13367 1082 aa12.82□□□□□ -0.36
RFFL-204ENST00000414419 BFSP2Q13515 415 aa12.82□□□□□ -0.36
RFFL-204ENST00000414419 MTMR1Q13613 665 aa12.82□□□□□ -0.36
RFFL-204ENST00000414419 KIAA0753Q2KHM9 967 aa12.82□□□□□ -0.36
RFFL-204ENST00000414419 TYW1BQ6NUM6 668 aa12.82□□□□□ -0.36
RFFL-204ENST00000414419 GPR153Q6NV75 609 aa12.82□□□□□ -0.36
RFFL-204ENST00000414419 RPUSD2Q8IZ73 545 aaKnown RBP12.82□□□□□ -0.36
RFFL-204ENST00000414419 CCDC155Q8N6L0 562 aa12.82□□□□□ -0.36
RFFL-204ENST00000414419 KAT2BQ92831 832 aa12.82□□□□□ -0.36
RFFL-204ENST00000414419 ZNF274Q96GC6 653 aaPredicted RBP12.82□□□□□ -0.36
RFFL-204ENST00000414419 SENP7Q9BQF6 1050 aa12.82□□□□□ -0.36
RFFL-204ENST00000414419 RNF26Q9BY78 433 aaPredicted RBP12.82□□□□□ -0.36
RFFL-204ENST00000414419 ANO3Q9BYT9 981 aa12.82□□□□□ -0.36
RFFL-204ENST00000414419 NCOA5Q9HCD5 579 aaKnown RBP12.82□□□□□ -0.36
RFFL-204ENST00000414419 F2P00734 622 aa12.81□□□□□ -0.36
RFFL-204ENST00000414419 ACRP10323 421 aa12.81□□□□□ -0.36
RFFL-204ENST00000414419 HOXD8P13378 290 aaPredicted RBP12.81□□□□□ -0.36
RFFL-204ENST00000414419 IFNAR1P17181 557 aa12.81□□□□□ -0.36
RFFL-204ENST00000414419 GNA11P29992 359 aa12.81□□□□□ -0.36
RFFL-204ENST00000414419 ZNF76P36508 570 aa12.81□□□□□ -0.36
RFFL-204ENST00000414419 EPHB4P54760 987 aa12.81□□□□□ -0.36
RFFL-204ENST00000414419 SP4Q02446 784 aa12.81□□□□□ -0.36
RFFL-204ENST00000414419 SSRP1Q08945 709 aaKnown RBP12.81□□□□□ -0.36
RFFL-204ENST00000414419 STK3Q13188 491 aa12.81□□□□□ -0.36
RFFL-204ENST00000414419 SEMA3FQ13275 785 aa12.81□□□□□ -0.36
RFFL-204ENST00000414419 MCTP2Q6DN12 878 aa12.81□□□□□ -0.36
RFFL-204ENST00000414419 PSRC1Q6PGN9 363 aaPredicted RBP12.81□□□□□ -0.36
RFFL-204ENST00000414419 SESTD1Q86VW0 696 aa12.81□□□□□ -0.36
RFFL-204ENST00000414419 CCDC148Q8NFR7 591 aa12.81□□□□□ -0.36
RFFL-204ENST00000414419 LARP6Q9BRS8 491 aaKnown RBP12.81□□□□□ -0.36
RFFL-204ENST00000414419 MTIF3Q9H2K0 278 aaKnown RBP12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms