RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 WHAMMP3Q1A5X7 153 aa23.14■■□□□ 1.3
CCDC88B-203ENST00000359902 CCDC122Q5T0U0 273 aa23.14■■□□□ 1.3
CCDC88B-203ENST00000359902 GMCL1Q96IK5 515 aa23.14■■□□□ 1.3
CCDC88B-203ENST00000359902 EIF3CQ99613 913 aaKnown RBP23.14■■□□□ 1.3
CCDC88B-203ENST00000359902 ATP8B1O43520 1251 aa23.14■■□□□ 1.29
CCDC88B-203ENST00000359902 SSBP05455 408 aaKnown RBP eCLIP23.14■■□□□ 1.29
CCDC88B-203ENST00000359902 PLA2G4AP47712 749 aa23.14■■□□□ 1.29
CCDC88B-203ENST00000359902 MOXD1Q6UVY6 613 aa23.14■■□□□ 1.29
CCDC88B-203ENST00000359902 AMNQ9BXJ7 453 aa23.14■■□□□ 1.29
CCDC88B-203ENST00000359902 BMP2KQ9NSY1 1161 aaPredicted RBP23.14■■□□□ 1.29
CCDC88B-203ENST00000359902 MYO6Q9UM54 1294 aa23.14■■□□□ 1.29
CCDC88B-203ENST00000359902 NDUFB10O96000 172 aa23.13■■□□□ 1.29
CCDC88B-203ENST00000359902 PLA2G4BP0C869 781 aa23.13■■□□□ 1.29
CCDC88B-203ENST00000359902 HNRNPH3P31942 346 aaKnown RBP23.13■■□□□ 1.29
CCDC88B-203ENST00000359902 ZCWPW2Q504Y3 356 aa23.13■■□□□ 1.29
CCDC88B-203ENST00000359902 TSG101Q99816 390 aa23.13■■□□□ 1.29
CCDC88B-203ENST00000359902 POTEB3A0JP26 581 aa23.13■■□□□ 1.29
CCDC88B-203ENST00000359902 RCCD1A6NED2 376 aa23.13■■□□□ 1.29
CCDC88B-203ENST00000359902 POTECB2RU33 542 aa23.13■■□□□ 1.29
CCDC88B-203ENST00000359902 EPHB6O15197 1021 aa23.13■■□□□ 1.29
CCDC88B-203ENST00000359902 SLC26A4O43511 780 aa23.13■■□□□ 1.29
CCDC88B-203ENST00000359902 ARHGAP4P98171 946 aa23.13■■□□□ 1.29
CCDC88B-203ENST00000359902 FAM26FQ5R3K3 315 aa23.13■■□□□ 1.29
CCDC88B-203ENST00000359902 POTEBQ6S5H4 581 aa23.13■■□□□ 1.29
CCDC88B-203ENST00000359902 KIAA1328Q86T90 577 aa23.13■■□□□ 1.29
CCDC88B-203ENST00000359902 C7orf43Q8WVR3 580 aa23.13■■□□□ 1.29
CCDC88B-203ENST00000359902 ANKZF1Q9H8Y5 726 aa23.13■■□□□ 1.29
CCDC88B-203ENST00000359902 PLAGL2Q9UPG8 496 aa23.13■■□□□ 1.29
CCDC88B-203ENST00000359902 TBC1D8O95759 1140 aa23.12■■□□□ 1.29
CCDC88B-203ENST00000359902 STAT3P40763 770 aa23.12■■□□□ 1.29
CCDC88B-203ENST00000359902 TUBB4BP68371 445 aa23.12■■□□□ 1.29
CCDC88B-203ENST00000359902 CCDC84Q86UT8 332 aaPredicted RBP23.12■■□□□ 1.29
CCDC88B-203ENST00000359902 SLFN12Q8IYM2 578 aa23.12■■□□□ 1.29
CCDC88B-203ENST00000359902 JAKMIP2Q96AA8 810 aa23.12■■□□□ 1.29
CCDC88B-203ENST00000359902 LACRTQ9GZZ8 138 aa23.12■■□□□ 1.29
CCDC88B-203ENST00000359902 PCDHA2Q9Y5H9 948 aa23.12■■□□□ 1.29
CCDC88B-203ENST00000359902 ATRNL1Q5VV63 1379 aa23.12■■□□□ 1.29
CCDC88B-203ENST00000359902 ENTPD3O75355 529 aa23.11■■□□□ 1.29
CCDC88B-203ENST00000359902 FBXO11Q86XK2 927 aa23.11■■□□□ 1.29
CCDC88B-203ENST00000359902 PRMT6Q96LA8 375 aaPredicted RBP23.11■■□□□ 1.29
CCDC88B-203ENST00000359902 FGFBP2Q9BYJ0 223 aa23.11■■□□□ 1.29
CCDC88B-203ENST00000359902 ARFGAP3Q9NP61 516 aa23.11■■□□□ 1.29
CCDC88B-203ENST00000359902 ST7Q9NRC1 585 aa23.11■■□□□ 1.29
CCDC88B-203ENST00000359902 FAM207AQ9NSI2 230 aaPredicted RBP23.11■■□□□ 1.29
CCDC88B-203ENST00000359902 KRT86O43790 486 aa23.11■■□□□ 1.29
CCDC88B-203ENST00000359902 MED24O75448 989 aa23.11■■□□□ 1.29
CCDC88B-203ENST00000359902 GH2P01242 217 aa23.11■■□□□ 1.29
CCDC88B-203ENST00000359902 RRP1BQ14684 758 aaKnown RBP23.11■■□□□ 1.29
CCDC88B-203ENST00000359902 SYDE2Q5VT97 1194 aa23.11■■□□□ 1.29
CCDC88B-203ENST00000359902 MCTP2Q6DN12 878 aa23.11■■□□□ 1.29
CCDC88B-203ENST00000359902 ETNPPLQ8TBG4 499 aa23.11■■□□□ 1.29
CCDC88B-203ENST00000359902 CNKSR1Q969H4 720 aa23.11■■□□□ 1.29
CCDC88B-203ENST00000359902 NPHP3-ACAD11A0A0J9YXS1 232 aa23.1■■□□□ 1.29
CCDC88B-203ENST00000359902 FKBP3Q00688 224 aaKnown RBP23.1■■□□□ 1.29
CCDC88B-203ENST00000359902 SPIRE1Q08AE8 756 aa23.1■■□□□ 1.29
CCDC88B-203ENST00000359902 TRAPPC11Q7Z392 1133 aa23.1■■□□□ 1.29
CCDC88B-203ENST00000359902 GPBP1Q86WP2 473 aa23.1■■□□□ 1.29
CCDC88B-203ENST00000359902 CCDC65Q8IXS2 484 aa23.1■■□□□ 1.29
CCDC88B-203ENST00000359902 MMRN2Q9H8L6 949 aa23.1■■□□□ 1.29
CCDC88B-203ENST00000359902 TBC1D7Q9P0N9 293 aa23.1■■□□□ 1.29
CCDC88B-203ENST00000359902 CTAGE15A4D2H0 777 aa23.1■■□□□ 1.29
CCDC88B-203ENST00000359902 CCDC151A5D8V7 595 aa23.1■■□□□ 1.29
CCDC88B-203ENST00000359902 SASH3O75995 380 aa23.1■■□□□ 1.29
CCDC88B-203ENST00000359902 IPO7O95373 1038 aaKnown RBP23.1■■□□□ 1.29
CCDC88B-203ENST00000359902 CTAGE8P0CG41 777 aa23.1■■□□□ 1.29
CCDC88B-203ENST00000359902 CYP11B2P19099 503 aa23.1■■□□□ 1.29
CCDC88B-203ENST00000359902 MMP14P50281 582 aa23.1■■□□□ 1.29
CCDC88B-203ENST00000359902 CYP27A1Q02318 531 aa23.1■■□□□ 1.29
CCDC88B-203ENST00000359902 USH1GQ495M9 461 aa23.1■■□□□ 1.29
CCDC88B-203ENST00000359902 PRR16Q569H4 304 aa23.1■■□□□ 1.29
CCDC88B-203ENST00000359902 RBM26Q5T8P6 1007 aaKnown RBP23.1■■□□□ 1.29
CCDC88B-203ENST00000359902 CTAGE6Q86UF2 777 aa23.1■■□□□ 1.29
CCDC88B-203ENST00000359902 CTAGE4Q8IX94 777 aa23.1■■□□□ 1.29
CCDC88B-203ENST00000359902 MSANTD4Q8NCY6 345 aa23.1■■□□□ 1.29
CCDC88B-203ENST00000359902 ZNF263O14978 683 aa23.09■■□□□ 1.29
CCDC88B-203ENST00000359902 PLEKP08567 350 aaPredicted RBP23.09■■□□□ 1.29
CCDC88B-203ENST00000359902 BMP3P12645 472 aa23.09■■□□□ 1.29
CCDC88B-203ENST00000359902 ERCC3P19447 782 aa23.09■■□□□ 1.29
CCDC88B-203ENST00000359902 IKQ13123 557 aaPredicted RBP23.09■■□□□ 1.29
CCDC88B-203ENST00000359902 BRD3Q15059 726 aa23.09■■□□□ 1.29
CCDC88B-203ENST00000359902 Q4G0T1 1027 aa23.09■■□□□ 1.29
CCDC88B-203ENST00000359902 CCDC42Q96M95 316 aa23.09■■□□□ 1.29
CCDC88B-203ENST00000359902 TRAF5O00463 557 aa23.09■■□□□ 1.29
CCDC88B-203ENST00000359902 ENC1O14682 589 aa23.09■■□□□ 1.29
CCDC88B-203ENST00000359902 ARSHQ5FYA8 562 aa23.09■■□□□ 1.29
CCDC88B-203ENST00000359902 BTNL9Q6UXG8 535 aa23.09■■□□□ 1.29
CCDC88B-203ENST00000359902 EHBP1Q8NDI1 1231 aa23.09■■□□□ 1.29
CCDC88B-203ENST00000359902 LENG9Q96B70 501 aa23.09■■□□□ 1.29
CCDC88B-203ENST00000359902 ARHGAP20Q9P2F6 1191 aa23.09■■□□□ 1.29
CCDC88B-203ENST00000359902 COL4A3BPQ9Y5P4 624 aa23.09■■□□□ 1.29
CCDC88B-203ENST00000359902 A0A1W2PRG0 241 aa23.08■■□□□ 1.29
CCDC88B-203ENST00000359902 POTEB2H3BUK9 544 aa23.08■■□□□ 1.29
CCDC88B-203ENST00000359902 TBX3O15119 743 aa23.08■■□□□ 1.29
CCDC88B-203ENST00000359902 SLC12A3P55017 1021 aa23.08■■□□□ 1.29
CCDC88B-203ENST00000359902 CACNB1Q02641 598 aaPredicted RBP23.08■■□□□ 1.29
CCDC88B-203ENST00000359902 NCAPH2Q6IBW4 605 aa23.08■■□□□ 1.29
CCDC88B-203ENST00000359902 CATSPER3Q86XQ3 398 aa23.08■■□□□ 1.29
CCDC88B-203ENST00000359902 HDAC6Q9UBN7 1215 aa23.08■■□□□ 1.29
CCDC88B-203ENST00000359902 RAB21Q9UL25 225 aa23.08■■□□□ 1.29
CCDC88B-203ENST00000359902 DUSP10Q9Y6W6 482 aa23.08■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 90.4 ms