RNA–Protein interactions for RNA: ENST00000319172.9

TMEM39A-201, Transcript of transmembrane protein 39A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TMEM39A, Length 4,369 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-201ENST00000319172 FKBP3Q00688 224 aaKnown RBP10.26□□□□□ -0.77
TMEM39A-201ENST00000319172 MTMR1Q13613 665 aa10.26□□□□□ -0.77
TMEM39A-201ENST00000319172 DHX40Q8IX18 779 aaKnown RBP10.26□□□□□ -0.77
TMEM39A-201ENST00000319172 CEP170P1Q96L14 293 aa10.26□□□□□ -0.77
TMEM39A-201ENST00000319172 SH2D3AQ9BRG2 576 aa10.26□□□□□ -0.77
TMEM39A-201ENST00000319172 RGL1Q9NZL6 768 aa10.26□□□□□ -0.77
TMEM39A-201ENST00000319172 FRMD4AQ9P2Q2 1039 aaPredicted RBP10.26□□□□□ -0.77
TMEM39A-201ENST00000319172 LRRIQ4A6NIV6 560 aa10.26□□□□□ -0.77
TMEM39A-201ENST00000319172 SPDYE4A6NLX3 237 aa10.26□□□□□ -0.77
TMEM39A-201ENST00000319172 MAGEA1P43355 309 aa10.26□□□□□ -0.77
TMEM39A-201ENST00000319172 RBL2Q08999 1139 aa10.26□□□□□ -0.77
TMEM39A-201ENST00000319172 KLHL30Q0D2K2 578 aa10.26□□□□□ -0.77
TMEM39A-201ENST00000319172 KRT31Q15323 416 aa10.26□□□□□ -0.77
TMEM39A-201ENST00000319172 SLC9C1Q4G0N8 1177 aa10.26□□□□□ -0.77
TMEM39A-201ENST00000319172 NKX2-3Q8TAU0 364 aa10.26□□□□□ -0.77
TMEM39A-201ENST00000319172 DEPTORQ8TB45 409 aa10.26□□□□□ -0.77
TMEM39A-201ENST00000319172 CCDC102AQ96A19 550 aa10.26□□□□□ -0.77
TMEM39A-201ENST00000319172 AGBL1Q96MI9 1066 aa10.26□□□□□ -0.77
TMEM39A-201ENST00000319172 AHDC1Q5TGY3 1603 aaPredicted RBP10.26□□□□□ -0.77
TMEM39A-201ENST00000319172 CTAGE15A4D2H0 777 aa10.26□□□□□ -0.77
TMEM39A-201ENST00000319172 WNT10BO00744 389 aa10.26□□□□□ -0.77
TMEM39A-201ENST00000319172 CTAGE8P0CG41 777 aa10.26□□□□□ -0.77
TMEM39A-201ENST00000319172 FCER1AP12319 257 aa10.26□□□□□ -0.77
TMEM39A-201ENST00000319172 KRT5P13647 590 aa10.26□□□□□ -0.77
TMEM39A-201ENST00000319172 POLGP54098 1239 aaPredicted RBP10.26□□□□□ -0.77
TMEM39A-201ENST00000319172 IGBP1P78318 339 aa10.26□□□□□ -0.77
TMEM39A-201ENST00000319172 ASIC2Q16515 512 aa10.26□□□□□ -0.77
TMEM39A-201ENST00000319172 CCDC144BQ3MJ40 725 aa10.26□□□□□ -0.77
TMEM39A-201ENST00000319172 CTAGE6Q86UF2 777 aa10.26□□□□□ -0.77
TMEM39A-201ENST00000319172 CTAGE4Q8IX94 777 aa10.26□□□□□ -0.77
TMEM39A-201ENST00000319172 DYDC2Q96IM9 177 aa10.26□□□□□ -0.77
TMEM39A-201ENST00000319172 PSMB7Q99436 277 aa10.26□□□□□ -0.77
TMEM39A-201ENST00000319172 FAM198AQ9UFP1 575 aa10.26□□□□□ -0.77
TMEM39A-201ENST00000319172 DYNC1I1O14576 645 aa10.25□□□□□ -0.77
TMEM39A-201ENST00000319172 ZNF500O60304 480 aaPredicted RBP10.25□□□□□ -0.77
TMEM39A-201ENST00000319172 CAP2P40123 477 aa10.25□□□□□ -0.77
TMEM39A-201ENST00000319172 POLR2FP61218 127 aaKnown RBP10.25□□□□□ -0.77
TMEM39A-201ENST00000319172 IQCB1Q15051 598 aa10.25□□□□□ -0.77
TMEM39A-201ENST00000319172 NBPF12Q5TAG4 269 aaPredicted RBP10.25□□□□□ -0.77
TMEM39A-201ENST00000319172 CTNNBL1Q8WYA6 563 aaPredicted RBP10.25□□□□□ -0.77
TMEM39A-201ENST00000319172 ELP3Q9H9T3 547 aa10.25□□□□□ -0.77
TMEM39A-201ENST00000319172 HOXC10Q9NYD6 342 aa10.25□□□□□ -0.77
TMEM39A-201ENST00000319172 IPO5O00410 1097 aaKnown RBP10.25□□□□□ -0.77
TMEM39A-201ENST00000319172 USP11P51784 963 aa10.25□□□□□ -0.77
TMEM39A-201ENST00000319172 RAD54LQ92698 747 aa10.25□□□□□ -0.77
TMEM39A-201ENST00000319172 ATP6V0A1Q93050 837 aa10.25□□□□□ -0.77
TMEM39A-201ENST00000319172 JAKMIP2Q96AA8 810 aa10.25□□□□□ -0.77
TMEM39A-201ENST00000319172 FAM20AQ96MK3 541 aa10.25□□□□□ -0.77
TMEM39A-201ENST00000319172 EHD4Q9H223 541 aa10.25□□□□□ -0.77
TMEM39A-201ENST00000319172 PCIF1Q9H4Z3 704 aa10.25□□□□□ -0.77
TMEM39A-201ENST00000319172 MYO6Q9UM54 1294 aa10.25□□□□□ -0.77
TMEM39A-201ENST00000319172 EEF1GP26641 437 aaKnown RBP10.25□□□□□ -0.77
TMEM39A-201ENST00000319172 CCND2P30279 289 aa10.25□□□□□ -0.77
TMEM39A-201ENST00000319172 FMR1Q06787 632 aaKnown RBP eCLIP10.25□□□□□ -0.77
TMEM39A-201ENST00000319172 TAF3Q5VWG9 929 aa10.25□□□□□ -0.77
TMEM39A-201ENST00000319172 ARMCX5Q6P1M9 558 aa10.25□□□□□ -0.77
TMEM39A-201ENST00000319172 UNC13DQ70J99 1090 aa10.25□□□□□ -0.77
TMEM39A-201ENST00000319172 DPP9Q86TI2 863 aa10.25□□□□□ -0.77
TMEM39A-201ENST00000319172 VSTM4Q8IW00 320 aa10.25□□□□□ -0.77
TMEM39A-201ENST00000319172 PDLIM2Q96JY6 352 aa10.25□□□□□ -0.77
TMEM39A-201ENST00000319172 TACC3Q9Y6A5 838 aa10.25□□□□□ -0.77
TMEM39A-201ENST00000319172 STRCP1A6NGW2 1772 aa10.24□□□□□ -0.77
TMEM39A-201ENST00000319172 GNA14O95837 355 aa10.24□□□□□ -0.77
TMEM39A-201ENST00000319172 RPS12P25398 132 aaKnown RBP10.24□□□□□ -0.77
TMEM39A-201ENST00000319172 MTERF2Q49AM1 385 aa10.24□□□□□ -0.77
TMEM39A-201ENST00000319172 CEP55Q53EZ4 464 aa10.24□□□□□ -0.77
TMEM39A-201ENST00000319172 SFMBT2Q5VUG0 894 aa10.24□□□□□ -0.77
TMEM39A-201ENST00000319172 ZNF280CQ8ND82 737 aa10.24□□□□□ -0.77
TMEM39A-201ENST00000319172 KIAA1524Q8TCG1 905 aa10.24□□□□□ -0.77
TMEM39A-201ENST00000319172 CCSER1Q9C0I3 900 aa10.24□□□□□ -0.77
TMEM39A-201ENST00000319172 ADD3Q9UEY8 706 aaKnown RBP10.24□□□□□ -0.77
TMEM39A-201ENST00000319172 FZD1Q9UP38 647 aa10.24□□□□□ -0.77
TMEM39A-201ENST00000319172 PPP2R2CQ9Y2T4 447 aa10.24□□□□□ -0.77
TMEM39A-201ENST00000319172 SLC37A4O43826 429 aa10.24□□□□□ -0.77
TMEM39A-201ENST00000319172 DLATP10515 647 aaKnown RBP10.24□□□□□ -0.77
TMEM39A-201ENST00000319172 TNNI1P19237 187 aa10.24□□□□□ -0.77
TMEM39A-201ENST00000319172 CDC25BP30305 580 aa10.24□□□□□ -0.77
TMEM39A-201ENST00000319172 GJC1P36383 396 aa10.24□□□□□ -0.77
TMEM39A-201ENST00000319172 PRPHP41219 470 aa10.24□□□□□ -0.77
TMEM39A-201ENST00000319172 RNASE9P60153 205 aaKnown RBP10.24□□□□□ -0.77
TMEM39A-201ENST00000319172 HLTFQ14527 1009 aaKnown RBP eCLIP10.24□□□□□ -0.77
TMEM39A-201ENST00000319172 SFR1Q86XK3 245 aa10.24□□□□□ -0.77
TMEM39A-201ENST00000319172 ANKRD13CQ8N6S4 541 aa10.24□□□□□ -0.77
TMEM39A-201ENST00000319172 DPF2Q92785 391 aa10.24□□□□□ -0.77
TMEM39A-201ENST00000319172 IDI2Q9BXS1 227 aa10.24□□□□□ -0.77
TMEM39A-201ENST00000319172 PARVGQ9HBI0 331 aa10.24□□□□□ -0.77
TMEM39A-201ENST00000319172 ACTN4O43707 911 aaKnown RBP10.24□□□□□ -0.77
TMEM39A-201ENST00000319172 OSBPP22059 807 aa10.24□□□□□ -0.77
TMEM39A-201ENST00000319172 DMP1Q13316 513 aaPredicted RBP10.24□□□□□ -0.77
TMEM39A-201ENST00000319172 SARM1Q6SZW1 724 aa10.24□□□□□ -0.77
TMEM39A-201ENST00000319172 CCDC125Q86Z20 511 aa10.24□□□□□ -0.77
TMEM39A-201ENST00000319172 CARD6Q9BX69 1037 aa10.24□□□□□ -0.77
TMEM39A-201ENST00000319172 TRIM9Q9C026 710 aa10.24□□□□□ -0.77
TMEM39A-201ENST00000319172 WDR46O15213 610 aaKnown RBP10.24□□□□□ -0.77
TMEM39A-201ENST00000319172 TEX33O43247 280 aa10.24□□□□□ -0.77
TMEM39A-201ENST00000319172 DDNO94850 711 aaPredicted RBP10.24□□□□□ -0.77
TMEM39A-201ENST00000319172 RHOXF2BP0C7M4 288 aa10.24□□□□□ -0.77
TMEM39A-201ENST00000319172 LMNB1P20700 586 aa10.24□□□□□ -0.77
TMEM39A-201ENST00000319172 TNFAIP3P21580 790 aa10.24□□□□□ -0.77
TMEM39A-201ENST00000319172 SMARCA1P28370 1054 aa10.24□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms