RNA–Protein interactions for RNA: ENSMUST00000076265.12

Upf3b-201, Transcript of UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Upf3b, Length 2,344 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3b-201ENSMUST00000076265 Gm3033M0QWI0 180 aa10.08□□□□□ -0.8
Upf3b-201ENSMUST00000076265 Vti1bO88384 232 aa10.08□□□□□ -0.8
Upf3b-201ENSMUST00000076265 Mfsd14aP70187 490 aa10.08□□□□□ -0.8
Upf3b-201ENSMUST00000076265 Mc1rQ01727 315 aa10.08□□□□□ -0.8
Upf3b-201ENSMUST00000076265 HecaQ3V1N5 544 aaKnown RBP10.08□□□□□ -0.8
Upf3b-201ENSMUST00000076265 Gpr101Q80T62 511 aa10.08□□□□□ -0.8
Upf3b-201ENSMUST00000076265 Ppp1r15bQ8BFW3 697 aa10.08□□□□□ -0.8
Upf3b-201ENSMUST00000076265 Scfd2Q8BTY8 684 aa10.08□□□□□ -0.8
Upf3b-201ENSMUST00000076265 Fbxo45Q8K3B1 286 aa10.08□□□□□ -0.8
Upf3b-201ENSMUST00000076265 Kbtbd4Q8R179 534 aa10.08□□□□□ -0.8
Upf3b-201ENSMUST00000076265 Cavin3Q91VJ2 260 aa10.08□□□□□ -0.8
Upf3b-201ENSMUST00000076265 YarsQ91WQ3 528 aaKnown RBP10.08□□□□□ -0.8
Upf3b-201ENSMUST00000076265 Ugp2Q91ZJ5 508 aa10.08□□□□□ -0.8
Upf3b-201ENSMUST00000076265 Gbe1Q9D6Y9 702 aa10.08□□□□□ -0.8
Upf3b-201ENSMUST00000076265 Erp27Q9D8U3 272 aa10.08□□□□□ -0.8
Upf3b-201ENSMUST00000076265 Ddx21Q9JIK5 851 aaKnown RBP10.08□□□□□ -0.8
Upf3b-201ENSMUST00000076265 Ambra1A2AH22 1300 aa10.08□□□□□ -0.8
Upf3b-201ENSMUST00000076265 NalcnQ8BXR5 1738 aa10.08□□□□□ -0.8
Upf3b-201ENSMUST00000076265 Nt5c1aA3KFX0 365 aa10.07□□□□□ -0.8
Upf3b-201ENSMUST00000076265 Slc25a54B1AUS6 473 aa10.07□□□□□ -0.8
Upf3b-201ENSMUST00000076265 EgfrQ01279 1210 aa10.07□□□□□ -0.8
Upf3b-201ENSMUST00000076265 Zfp560Q3URI6 754 aa10.07□□□□□ -0.8
Upf3b-201ENSMUST00000076265 ZpbpQ62522 350 aa10.07□□□□□ -0.8
Upf3b-201ENSMUST00000076265 Mcf2lQ64096 1149 aa10.07□□□□□ -0.8
Upf3b-201ENSMUST00000076265 Krt77Q6IFZ6 572 aa10.07□□□□□ -0.8
Upf3b-201ENSMUST00000076265 Grwd1Q810D6 446 aaKnown RBP10.07□□□□□ -0.8
Upf3b-201ENSMUST00000076265 Aoc2Q812C9 757 aa10.07□□□□□ -0.8
Upf3b-201ENSMUST00000076265 Cdan1Q8CC12 1239 aa10.07□□□□□ -0.8
Upf3b-201ENSMUST00000076265 Cdca7lQ922M5 438 aa10.07□□□□□ -0.8
Upf3b-201ENSMUST00000076265 Dhx58Q99J87 678 aa10.07□□□□□ -0.8
Upf3b-201ENSMUST00000076265 Ttc14Q9CSP9 761 aa10.07□□□□□ -0.8
Upf3b-201ENSMUST00000076265 Cyc1Q9D0M3 325 aaKnown RBP10.07□□□□□ -0.8
Upf3b-201ENSMUST00000076265 Trim42Q9D2H5 723 aa10.07□□□□□ -0.8
Upf3b-201ENSMUST00000076265 Mtmr1Q9Z2C4 669 aa10.07□□□□□ -0.8
Upf3b-201ENSMUST00000076265 Lrrc23O35125 340 aa10.07□□□□□ -0.8
Upf3b-201ENSMUST00000076265 Irx1P81068 480 aa10.07□□□□□ -0.8
Upf3b-201ENSMUST00000076265 Tmprss15P97435 1069 aa10.07□□□□□ -0.8
Upf3b-201ENSMUST00000076265 WhammQ571B6 793 aa10.07□□□□□ -0.8
Upf3b-201ENSMUST00000076265 Gm12185Q5NCB2 835 aa10.07□□□□□ -0.8
Upf3b-201ENSMUST00000076265 Spata24Q6P926 205 aa10.07□□□□□ -0.8
Upf3b-201ENSMUST00000076265 Tmc8Q7TN58 722 aa10.07□□□□□ -0.8
Upf3b-201ENSMUST00000076265 LdhdQ7TNG8 484 aa10.07□□□□□ -0.8
Upf3b-201ENSMUST00000076265 Hook1Q8BIL5 728 aa10.07□□□□□ -0.8
Upf3b-201ENSMUST00000076265 Nop53Q8BK35 484 aaKnown RBP10.07□□□□□ -0.8
Upf3b-201ENSMUST00000076265 Tmem260Q8BMD6 703 aa10.07□□□□□ -0.8
Upf3b-201ENSMUST00000076265 Ago4Q8CJF8 861 aa10.07□□□□□ -0.8
Upf3b-201ENSMUST00000076265 Map4k3Q99JP0 894 aa10.07□□□□□ -0.8
Upf3b-201ENSMUST00000076265 Med4Q9CQA5 270 aa10.07□□□□□ -0.8
Upf3b-201ENSMUST00000076265 PrameQ9D4Z5 464 aa10.07□□□□□ -0.8
Upf3b-201ENSMUST00000076265 Opn4Q9QXZ9 521 aa10.07□□□□□ -0.8
Upf3b-201ENSMUST00000076265 FscbA1EGX6 1074 aa10.06□□□□□ -0.8
Upf3b-201ENSMUST00000076265 Ptrhd1D3Z4S3 140 aa10.06□□□□□ -0.8
Upf3b-201ENSMUST00000076265 IvlP48997 467 aa10.06□□□□□ -0.8
Upf3b-201ENSMUST00000076265 CidecP56198 239 aa10.06□□□□□ -0.8
Upf3b-201ENSMUST00000076265 Hdac2P70288 488 aa10.06□□□□□ -0.8
Upf3b-201ENSMUST00000076265 Atp11aP98197 1187 aa10.06□□□□□ -0.8
Upf3b-201ENSMUST00000076265 Ccdc162pQ0VG85 912 aa10.06□□□□□ -0.8
Upf3b-201ENSMUST00000076265 Lrrc14bQ3UJB3 510 aa10.06□□□□□ -0.8
Upf3b-201ENSMUST00000076265 Pex1Q5BL07 1284 aa10.06□□□□□ -0.8
Upf3b-201ENSMUST00000076265 Rap1gap2Q5SVL6 712 aaKnown RBP10.06□□□□□ -0.8
Upf3b-201ENSMUST00000076265 Ppp2r5eQ61151 467 aa10.06□□□□□ -0.8
Upf3b-201ENSMUST00000076265 SrmsQ62270 496 aa10.06□□□□□ -0.8
Upf3b-201ENSMUST00000076265 HelbQ6NVF4 1074 aa10.06□□□□□ -0.8
Upf3b-201ENSMUST00000076265 Stmnd1Q6P3A1 279 aa10.06□□□□□ -0.8
Upf3b-201ENSMUST00000076265 Frmd3Q8BHD4 595 aa10.06□□□□□ -0.8
Upf3b-201ENSMUST00000076265 Gk5Q8BX05 534 aa10.06□□□□□ -0.8
Upf3b-201ENSMUST00000076265 4930550L24RikQ99PA7 320 aa10.06□□□□□ -0.8
Upf3b-201ENSMUST00000076265 C3P01027 1663 aa10.06□□□□□ -0.8
Upf3b-201ENSMUST00000076265 Cep85lA0A1W2P884 806 aa10.06□□□□□ -0.8
Upf3b-201ENSMUST00000076265 Maml3D4QGC2 1135 aa10.06□□□□□ -0.8
Upf3b-201ENSMUST00000076265 Mybpc3O70468 1270 aaKnown RBP10.06□□□□□ -0.8
Upf3b-201ENSMUST00000076265 Slc4a4O88343 1079 aa10.06□□□□□ -0.8
Upf3b-201ENSMUST00000076265 PcnaP17918 261 aa10.06□□□□□ -0.8
Upf3b-201ENSMUST00000076265 IntuQ059U7 942 aa10.06□□□□□ -0.8
Upf3b-201ENSMUST00000076265 Trim63Q38HM4 350 aa10.06□□□□□ -0.8
Upf3b-201ENSMUST00000076265 E330034G19RikQ3UWX6 351 aa10.06□□□□□ -0.8
Upf3b-201ENSMUST00000076265 HadhQ61425 314 aa10.06□□□□□ -0.8
Upf3b-201ENSMUST00000076265 Krt87Q6IMF0 495 aa10.06□□□□□ -0.8
Upf3b-201ENSMUST00000076265 WtipQ7TQJ8 398 aa10.06□□□□□ -0.8
Upf3b-201ENSMUST00000076265 Mtrf1Q8K126 446 aa10.06□□□□□ -0.8
Upf3b-201ENSMUST00000076265 Saal1Q9D2C2 474 aa10.06□□□□□ -0.8
Upf3b-201ENSMUST00000076265 Ccdc94Q9D6J3 314 aa10.06□□□□□ -0.8
Upf3b-201ENSMUST00000076265 Prl2a1Q9JHK0 228 aa10.06□□□□□ -0.8
Upf3b-201ENSMUST00000076265 Cep170bQ80U49 1574 aa10.06□□□□□ -0.8
Upf3b-201ENSMUST00000076265 Gm10110D3Z5M2 615 aa10.05□□□□□ -0.8
Upf3b-201ENSMUST00000076265 Yjefn3F6W8I0 251 aa10.05□□□□□ -0.8
Upf3b-201ENSMUST00000076265 Pold2O35654 469 aa10.05□□□□□ -0.8
Upf3b-201ENSMUST00000076265 Clec11aO88200 328 aa10.05□□□□□ -0.8
Upf3b-201ENSMUST00000076265 Bend4P86174 541 aa10.05□□□□□ -0.8
Upf3b-201ENSMUST00000076265 Znf652Q5DU09 608 aa10.05□□□□□ -0.8
Upf3b-201ENSMUST00000076265 Utp18Q5SSI6 552 aaKnown RBP10.05□□□□□ -0.8
Upf3b-201ENSMUST00000076265 Filip1lQ6P6L0 1131 aa10.05□□□□□ -0.8
Upf3b-201ENSMUST00000076265 Pabpc4Q6PHQ9 660 aaKnown RBP10.05□□□□□ -0.8
Upf3b-201ENSMUST00000076265 Zscan22Q8BGS5 496 aa10.05□□□□□ -0.8
Upf3b-201ENSMUST00000076265 Gm10600Q8BQ57 223 aa10.05□□□□□ -0.8
Upf3b-201ENSMUST00000076265 Zc3h6Q8BYK8 1177 aa10.05□□□□□ -0.8
Upf3b-201ENSMUST00000076265 Eif2b5Q8CHW4 717 aa10.05□□□□□ -0.8
Upf3b-201ENSMUST00000076265 BlmhQ8R016 455 aa10.05□□□□□ -0.8
Upf3b-201ENSMUST00000076265 Mfsd5Q921Y4 450 aa10.05□□□□□ -0.8
Upf3b-201ENSMUST00000076265 TympQ99N42 471 aa10.05□□□□□ -0.8
Retrieved 100 of 22,080 RNA–protein pairs in 65.5 ms