RNA–Protein interactions for RNA: ENST00000580540.1

SREBF1-219, Transcript of sterol regulatory element binding transcription factor 1, humanhuman

TSL 4

Gene SREBF1, Length 540 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SREBF1-219ENST00000580540 PGM5Q15124 567 aa19.18■□□□□ 0.66
SREBF1-219ENST00000580540 CCDC62Q6P9F0 684 aa19.18■□□□□ 0.66
SREBF1-219ENST00000580540 USP17L6PQ6QN14 398 aa19.18■□□□□ 0.66
SREBF1-219ENST00000580540 IL31RAQ8NI17 732 aa19.18■□□□□ 0.66
SREBF1-219ENST00000580540 KIAA0355O15063 1070 aa19.17■□□□□ 0.66
SREBF1-219ENST00000580540 GH1P01241 217 aa19.17■□□□□ 0.66
SREBF1-219ENST00000580540 CASTP20810 708 aaKnown RBP19.17■□□□□ 0.66
SREBF1-219ENST00000580540 ITGB8P26012 769 aa19.17■□□□□ 0.66
SREBF1-219ENST00000580540 PSMA5P28066 241 aa19.17■□□□□ 0.66
SREBF1-219ENST00000580540 HEATR3Q7Z4Q2 680 aa19.17■□□□□ 0.66
SREBF1-219ENST00000580540 BRF1Q92994 677 aa19.17■□□□□ 0.66
SREBF1-219ENST00000580540 MTG1Q9BT17 334 aaPredicted RBP19.17■□□□□ 0.66
SREBF1-219ENST00000580540 SORBS3O60504 671 aa19.16■□□□□ 0.66
SREBF1-219ENST00000580540 RPS6KB1P23443 525 aa19.16■□□□□ 0.66
SREBF1-219ENST00000580540 PURAQ00577 322 aaKnown RBP19.16■□□□□ 0.66
SREBF1-219ENST00000580540 VSIG10LQ86VR7 867 aa19.16■□□□□ 0.66
SREBF1-219ENST00000580540 FAM126BQ8IXS8 530 aa19.16■□□□□ 0.66
SREBF1-219ENST00000580540 AFG1LQ8WV93 481 aa19.16■□□□□ 0.66
SREBF1-219ENST00000580540 GPKOWQ92917 476 aaPredicted RBP eCLIP19.16■□□□□ 0.664e-7■□□□□ 8.7
SREBF1-219ENST00000580540 PSTPIP2Q9H939 334 aa19.16■□□□□ 0.66
SREBF1-219ENST00000580540 DDX41Q9UJV9 622 aaKnown RBP19.16■□□□□ 0.66
SREBF1-219ENST00000580540 GRIN2DO15399 1336 aa19.16■□□□□ 0.66
SREBF1-219ENST00000580540 RANBP2P49792 3224 aaKnown RBP19.16■□□□□ 0.66
SREBF1-219ENST00000580540 A6NJR5 290 aa19.15■□□□□ 0.66
SREBF1-219ENST00000580540 METAP2P50579 478 aaKnown RBP eCLIP19.15■□□□□ 0.66
SREBF1-219ENST00000580540 ARHGAP1Q07960 439 aa19.15■□□□□ 0.66
SREBF1-219ENST00000580540 FAM47CQ5HY64 1035 aa19.15■□□□□ 0.66
SREBF1-219ENST00000580540 PPP1R13LQ8WUF5 828 aa19.15■□□□□ 0.66
SREBF1-219ENST00000580540 USP26Q9BXU7 913 aa19.15■□□□□ 0.66
SREBF1-219ENST00000580540 PPP1R12CQ9BZL4 782 aa19.15■□□□□ 0.66
SREBF1-219ENST00000580540 RTEL1Q9NZ71 1219 aa19.15■□□□□ 0.66
SREBF1-219ENST00000580540 V9GY48 417 aaPredicted RBP19.15■□□□□ 0.66
SREBF1-219ENST00000580540 SOX1O00570 391 aaPredicted RBP19.14■□□□□ 0.65
SREBF1-219ENST00000580540 KPNA6O60684 536 aa19.14■□□□□ 0.65
SREBF1-219ENST00000580540 CDC27P30260 824 aa19.14■□□□□ 0.65
SREBF1-219ENST00000580540 DHX37Q8IY37 1157 aaKnown RBP19.14■□□□□ 0.65
SREBF1-219ENST00000580540 SLC43A3Q8NBI5 491 aa19.14■□□□□ 0.65
SREBF1-219ENST00000580540 LRCH3Q96II8 777 aa19.14■□□□□ 0.65
SREBF1-219ENST00000580540 TRPV6Q9H1D0 765 aa19.14■□□□□ 0.65
SREBF1-219ENST00000580540 TBX21Q9UL17 535 aa19.14■□□□□ 0.65
SREBF1-219ENST00000580540 CNTNAP5Q8WYK1 1306 aa19.14■□□□□ 0.65
SREBF1-219ENST00000580540 KIAA1217Q5T5P2 1943 aa19.13■□□□□ 0.65
SREBF1-219ENST00000580540 MEIS2O14770 477 aa19.13■□□□□ 0.65
SREBF1-219ENST00000580540 RGS20O76081 388 aa19.13■□□□□ 0.65
SREBF1-219ENST00000580540 TIMP1P01033 207 aa19.13■□□□□ 0.65
SREBF1-219ENST00000580540 ADD1P35611 737 aaKnown RBP19.13■□□□□ 0.65
SREBF1-219ENST00000580540 UBE2SQ16763 222 aa19.13■□□□□ 0.65
SREBF1-219ENST00000580540 KCNV1Q6PIU1 500 aa19.13■□□□□ 0.65
SREBF1-219ENST00000580540 LTBP2Q14767 1821 aa19.13■□□□□ 0.65
SREBF1-219ENST00000580540 PIK3CDO00329 1044 aa19.12■□□□□ 0.65
SREBF1-219ENST00000580540 EPB41L2O43491 1005 aaKnown RBP19.12■□□□□ 0.65
SREBF1-219ENST00000580540 CD4P01730 458 aa19.12■□□□□ 0.65
SREBF1-219ENST00000580540 MMP3P08254 477 aa19.12■□□□□ 0.65
SREBF1-219ENST00000580540 NAPAP54920 295 aa19.12■□□□□ 0.65
SREBF1-219ENST00000580540 FPGSQ05932 587 aa19.12■□□□□ 0.65
SREBF1-219ENST00000580540 LAMC2Q13753 1193 aa19.12■□□□□ 0.65
SREBF1-219ENST00000580540 SHHQ15465 462 aa19.12■□□□□ 0.65
SREBF1-219ENST00000580540 NBPF20Q3BBV1 942 aa19.12■□□□□ 0.65
SREBF1-219ENST00000580540 C9orf50Q5SZB4 431 aa19.12■□□□□ 0.65
SREBF1-219ENST00000580540 WWC2Q6AWC2 1192 aa19.12■□□□□ 0.65
SREBF1-219ENST00000580540 SEZ6LQ9BYH1 1024 aa19.12■□□□□ 0.65
SREBF1-219ENST00000580540 FAM217BQ9NTX9 383 aaPredicted RBP19.12■□□□□ 0.65
SREBF1-219ENST00000580540 CCDC196A0A1B0GTZ2 297 aa19.11■□□□□ 0.65
SREBF1-219ENST00000580540 SPDYE3A6NKU9 549 aa19.11■□□□□ 0.65
SREBF1-219ENST00000580540 B4GALT4O60513 344 aa19.11■□□□□ 0.65
SREBF1-219ENST00000580540 GGPS1O95749 300 aa19.11■□□□□ 0.65
SREBF1-219ENST00000580540 CYP2C18P33260 490 aa19.11■□□□□ 0.65
SREBF1-219ENST00000580540 RCAN1P53805 252 aa19.11■□□□□ 0.65
SREBF1-219ENST00000580540 MRPS9P82933 396 aaKnown RBP19.11■□□□□ 0.65
SREBF1-219ENST00000580540 FUT2Q10981 343 aa19.11■□□□□ 0.65
SREBF1-219ENST00000580540 DGKDQ16760 1214 aa19.11■□□□□ 0.65
SREBF1-219ENST00000580540 GNPTABQ3T906 1256 aa19.11■□□□□ 0.65
SREBF1-219ENST00000580540 RUFY3Q7L099 469 aa19.11■□□□□ 0.65
SREBF1-219ENST00000580540 ALDH8A1Q9H2A2 487 aaPredicted RBP19.11■□□□□ 0.65
SREBF1-219ENST00000580540 MLXIPQ9HAP2 919 aa19.11■□□□□ 0.65
SREBF1-219ENST00000580540 TRMT13Q9NUP7 481 aaKnown RBP19.11■□□□□ 0.65
SREBF1-219ENST00000580540 CYP46A1Q9Y6A2 500 aa19.11■□□□□ 0.65
SREBF1-219ENST00000580540 EPHB4P54760 987 aa19.1■□□□□ 0.65
SREBF1-219ENST00000580540 SP2Q02086 613 aa19.1■□□□□ 0.65
SREBF1-219ENST00000580540 LRIT3Q3SXY7 679 aa19.1■□□□□ 0.65
SREBF1-219ENST00000580540 CELF3Q5SZQ8 465 aaKnown RBP19.1■□□□□ 0.65
SREBF1-219ENST00000580540 SPATA33Q96N06 139 aa19.1■□□□□ 0.65
SREBF1-219ENST00000580540 UPF3BQ9BZI7 483 aaKnown RBP19.1■□□□□ 0.65
SREBF1-219ENST00000580540 HIPK3Q9H422 1215 aa19.1■□□□□ 0.65
SREBF1-219ENST00000580540 ZSWIM6Q9HCJ5 1215 aa19.1■□□□□ 0.65
SREBF1-219ENST00000580540 FRMPD4Q14CM0 1322 aa19.09■□□□□ 0.65
SREBF1-219ENST00000580540 PPFIA3O75145 1194 aa19.09■□□□□ 0.65
SREBF1-219ENST00000580540 STAM2O75886 525 aa19.09■□□□□ 0.65
SREBF1-219ENST00000580540 TGFB3P10600 412 aa19.09■□□□□ 0.65
SREBF1-219ENST00000580540 UBA1P22314 1058 aaKnown RBP19.09■□□□□ 0.65
SREBF1-219ENST00000580540 CCT2P78371 535 aaKnown RBP19.09■□□□□ 0.65
SREBF1-219ENST00000580540 MYSM1Q5VVJ2 828 aa19.09■□□□□ 0.65
SREBF1-219ENST00000580540 PCNX4Q63HM2 1172 aa19.09■□□□□ 0.65
SREBF1-219ENST00000580540 MFSD5Q6N075 450 aa19.09■□□□□ 0.65
SREBF1-219ENST00000580540 TMEM199Q8N511 208 aa19.09■□□□□ 0.65
SREBF1-219ENST00000580540 EMID1Q96A84 441 aaPredicted RBP19.09■□□□□ 0.65
SREBF1-219ENST00000580540 LARP6Q9BRS8 491 aaKnown RBP19.09■□□□□ 0.65
SREBF1-219ENST00000580540 PCDHA6Q9UN73 950 aa19.09■□□□□ 0.65
SREBF1-219ENST00000580540 PCDHA8Q9Y5H6 950 aa19.09■□□□□ 0.65
SREBF1-219ENST00000580540 MYH7BA7E2Y1 1941 aa19.09■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 74.8 ms