RNA–Protein interactions for RNA: ENST00000568239.1

SMG1-215, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 1 (best)

Gene SMG1, Length 2,978 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-215ENST00000568239 DOCK1Q14185 1865 aa7.93□□□□□ -1.14
SMG1-215ENST00000568239 PTGS1P23219 599 aa7.93□□□□□ -1.14
SMG1-215ENST00000568239 AMPD3Q01432 767 aa7.93□□□□□ -1.14
SMG1-215ENST00000568239 VGLL4Q14135 290 aa7.93□□□□□ -1.14
SMG1-215ENST00000568239 PLS1Q14651 629 aa7.93□□□□□ -1.14
SMG1-215ENST00000568239 DDX55Q8NHQ9 600 aaKnown RBP eCLIP7.93□□□□□ -1.14
SMG1-215ENST00000568239 LARP4BQ92615 738 aaKnown RBP7.93□□□□□ -1.14
SMG1-215ENST00000568239 CUEDC2Q9H467 287 aa7.93□□□□□ -1.14
SMG1-215ENST00000568239 KCNMB3Q9NPA1 279 aa7.93□□□□□ -1.14
SMG1-215ENST00000568239 CTNND2Q9UQB3 1225 aa7.93□□□□□ -1.14
SMG1-215ENST00000568239 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP7.93□□□□□ -1.14
SMG1-215ENST00000568239 PITPNM2Q9BZ72 1349 aa7.93□□□□□ -1.14
SMG1-215ENST00000568239 CYP3A7-CYP3A51PA0A087WV96 503 aa7.92□□□□□ -1.14
SMG1-215ENST00000568239 C19orf81C9J6K1 198 aa7.92□□□□□ -1.14
SMG1-215ENST00000568239 VWA5AO00534 786 aa7.92□□□□□ -1.14
SMG1-215ENST00000568239 CHMP2AO43633 222 aa7.92□□□□□ -1.14
SMG1-215ENST00000568239 IDEP14735 1019 aa7.92□□□□□ -1.14
SMG1-215ENST00000568239 CYP3A7P24462 503 aa7.92□□□□□ -1.14
SMG1-215ENST00000568239 UBASH3AP57075 661 aa7.92□□□□□ -1.14
SMG1-215ENST00000568239 MAP3K9P80192 1104 aa7.92□□□□□ -1.14
SMG1-215ENST00000568239 FANCCQ00597 558 aa7.92□□□□□ -1.14
SMG1-215ENST00000568239 ECM1Q16610 540 aa7.92□□□□□ -1.14
SMG1-215ENST00000568239 KMT5BQ4FZB7 885 aa7.92□□□□□ -1.14
SMG1-215ENST00000568239 MUM1L1Q5H9M0 696 aa7.92□□□□□ -1.14
SMG1-215ENST00000568239 MOXD1Q6UVY6 613 aa7.92□□□□□ -1.14
SMG1-215ENST00000568239 PPP1R3FQ6ZSY5 799 aaPredicted RBP7.92□□□□□ -1.14
SMG1-215ENST00000568239 MOB2Q70IA6 237 aa7.92□□□□□ -1.14
SMG1-215ENST00000568239 MCF2L2Q86YR7 1114 aa7.92□□□□□ -1.14
SMG1-215ENST00000568239 FAM43AQ8N2R8 423 aa7.92□□□□□ -1.14
SMG1-215ENST00000568239 CRYGNQ8WXF5 182 aa7.92□□□□□ -1.14
SMG1-215ENST00000568239 CCDC47Q96A33 483 aaKnown RBP7.92□□□□□ -1.14
SMG1-215ENST00000568239 TRERF1Q96PN7 1200 aa7.92□□□□□ -1.14
SMG1-215ENST00000568239 PNMA5Q96PV4 448 aa7.92□□□□□ -1.14
SMG1-215ENST00000568239 PKD2L1Q9P0L9 805 aa7.92□□□□□ -1.14
SMG1-215ENST00000568239 KIAA1024Q9UPX6 916 aa7.92□□□□□ -1.14
SMG1-215ENST00000568239 CLEC11AQ9Y240 323 aa7.92□□□□□ -1.14
SMG1-215ENST00000568239 ZKSCAN5Q9Y2L8 839 aa7.92□□□□□ -1.14
SMG1-215ENST00000568239 SSC5DA1L4H1 1573 aa7.92□□□□□ -1.14
SMG1-215ENST00000568239 SYNRGQ9UMZ2 1314 aa7.92□□□□□ -1.14
SMG1-215ENST00000568239 POTEB3A0JP26 581 aa7.92□□□□□ -1.14
SMG1-215ENST00000568239 POTECB2RU33 542 aa7.92□□□□□ -1.14
SMG1-215ENST00000568239 MSH4O15457 936 aa7.92□□□□□ -1.14
SMG1-215ENST00000568239 NF2P35240 595 aa7.92□□□□□ -1.14
SMG1-215ENST00000568239 IREB2P48200 963 aaKnown RBP7.92□□□□□ -1.14
SMG1-215ENST00000568239 CYP4A11Q02928 519 aa7.92□□□□□ -1.14
SMG1-215ENST00000568239 PDE4DQ08499 809 aa7.92□□□□□ -1.14
SMG1-215ENST00000568239 PTPN21Q16825 1174 aa7.92□□□□□ -1.14
SMG1-215ENST00000568239 ZNF658Q5TYW1 1059 aaPredicted RBP7.92□□□□□ -1.14
SMG1-215ENST00000568239 POTEBQ6S5H4 581 aa7.92□□□□□ -1.14
SMG1-215ENST00000568239 ETNPPLQ8TBG4 499 aa7.92□□□□□ -1.14
SMG1-215ENST00000568239 ENOX1Q8TC92 643 aaKnown RBP7.92□□□□□ -1.14
SMG1-215ENST00000568239 OTUD5Q96G74 571 aa7.92□□□□□ -1.14
SMG1-215ENST00000568239 TRIM9Q9C026 710 aa7.92□□□□□ -1.14
SMG1-215ENST00000568239 ELP3Q9H9T3 547 aa7.92□□□□□ -1.14
SMG1-215ENST00000568239 SAMSN1Q9NSI8 373 aaKnown RBP7.92□□□□□ -1.14
SMG1-215ENST00000568239 EXOC1Q9NV70 894 aa7.92□□□□□ -1.14
SMG1-215ENST00000568239 ERCC5P28715 1186 aaPredicted RBP7.92□□□□□ -1.14
SMG1-215ENST00000568239 COG2Q14746 738 aa7.92□□□□□ -1.14
SMG1-215ENST00000568239 Q4G0T1 1027 aa7.92□□□□□ -1.14
SMG1-215ENST00000568239 SNRNP48Q6IEG0 339 aaKnown RBP7.92□□□□□ -1.14
SMG1-215ENST00000568239 KCNK18Q7Z418 384 aa7.92□□□□□ -1.14
SMG1-215ENST00000568239 ARHGAP30Q7Z6I6 1101 aaPredicted RBP7.92□□□□□ -1.14
SMG1-215ENST00000568239 LENG9Q96B70 501 aa7.92□□□□□ -1.14
SMG1-215ENST00000568239 MRFAP1L1Q96HT8 127 aa7.92□□□□□ -1.14
SMG1-215ENST00000568239 HSD3B7Q9H2F3 369 aa7.92□□□□□ -1.14
SMG1-215ENST00000568239 ZNF408Q9H9D4 720 aa7.92□□□□□ -1.14
SMG1-215ENST00000568239 MAGEF1Q9HAY2 307 aa7.92□□□□□ -1.14
SMG1-215ENST00000568239 BLOC1S4Q9NUP1 217 aa7.92□□□□□ -1.14
SMG1-215ENST00000568239 STK17AQ9UEE5 414 aa7.92□□□□□ -1.14
SMG1-215ENST00000568239 AFG3L2Q9Y4W6 797 aa7.92□□□□□ -1.14
SMG1-215ENST00000568239 PPP1R3GB7ZBB8 358 aa7.91□□□□□ -1.14
SMG1-215ENST00000568239 E9PMD0 336 aa7.91□□□□□ -1.14
SMG1-215ENST00000568239 DDX39AO00148 427 aaKnown RBP7.91□□□□□ -1.14
SMG1-215ENST00000568239 MEIS1O00470 390 aa7.91□□□□□ -1.14
SMG1-215ENST00000568239 MYL1P05976 194 aa7.91□□□□□ -1.14
SMG1-215ENST00000568239 EIF2AK2P19525 551 aaKnown RBP7.91□□□□□ -1.14
SMG1-215ENST00000568239 CIITAP33076 1130 aa7.91□□□□□ -1.14
SMG1-215ENST00000568239 PRCPP42785 496 aa7.91□□□□□ -1.14
SMG1-215ENST00000568239 RPS6P62753 249 aaKnown RBP7.91□□□□□ -1.14
SMG1-215ENST00000568239 RAD51AP2Q09MP3 1159 aa7.91□□□□□ -1.14
SMG1-215ENST00000568239 HAUS3Q68CZ6 603 aa7.91□□□□□ -1.14
SMG1-215ENST00000568239 RNF207Q6ZRF8 634 aa7.91□□□□□ -1.14
SMG1-215ENST00000568239 ERMNQ8TAM6 284 aa7.91□□□□□ -1.14
SMG1-215ENST00000568239 CLEC4DQ8WXI8 215 aa7.91□□□□□ -1.14
SMG1-215ENST00000568239 RAD54LQ92698 747 aa7.91□□□□□ -1.14
SMG1-215ENST00000568239 HPS3Q969F9 1004 aa7.91□□□□□ -1.14
SMG1-215ENST00000568239 FAM20AQ96MK3 541 aa7.91□□□□□ -1.14
SMG1-215ENST00000568239 MBOAT7Q96N66 472 aa7.91□□□□□ -1.14
SMG1-215ENST00000568239 NT5C3AQ9H0P0 336 aa7.91□□□□□ -1.14
SMG1-215ENST00000568239 COL20A1Q9P218 1284 aa7.91□□□□□ -1.14
SMG1-215ENST00000568239 RIPK3Q9Y572 518 aa7.91□□□□□ -1.14
SMG1-215ENST00000568239 SNCAIPQ9Y6H5 919 aa7.91□□□□□ -1.14
SMG1-215ENST00000568239 POTEFA5A3E0 1075 aa7.91□□□□□ -1.14
SMG1-215ENST00000568239 GLTPD2A6NH11 291 aa7.91□□□□□ -1.14
SMG1-215ENST00000568239 MYMKA6NI61 221 aa7.91□□□□□ -1.14
SMG1-215ENST00000568239 TBX3O15119 743 aa7.91□□□□□ -1.14
SMG1-215ENST00000568239 MED24O75448 989 aa7.91□□□□□ -1.14
SMG1-215ENST00000568239 CYP3A4P08684 503 aa7.91□□□□□ -1.14
SMG1-215ENST00000568239 POTEIP0CG38 1075 aa7.91□□□□□ -1.14
SMG1-215ENST00000568239 MYCLP12524 364 aaPredicted RBP7.91□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms