RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 NAPAP54920 295 aa10.61□□□□□ -0.71
VPS35-206ENST00000565228 GJA9P57773 515 aa10.61□□□□□ -0.71
VPS35-206ENST00000565228 LRRC26Q2I0M4 334 aa10.61□□□□□ -0.71
VPS35-206ENST00000565228 ARHGEF16Q5VV41 709 aa10.61□□□□□ -0.71
VPS35-206ENST00000565228 SEPT14Q6ZU15 432 aa10.61□□□□□ -0.71
VPS35-206ENST00000565228 OXER1Q8TDS5 423 aa10.61□□□□□ -0.71
VPS35-206ENST00000565228 NSUN6Q8TEA1 469 aaKnown RBP10.61□□□□□ -0.71
VPS35-206ENST00000565228 MAF1Q9H063 256 aa10.61□□□□□ -0.71
VPS35-206ENST00000565228 ZMYND12Q9H0C1 365 aa10.61□□□□□ -0.71
VPS35-206ENST00000565228 SLKQ9H2G2 1235 aaPredicted RBP10.61□□□□□ -0.71
VPS35-206ENST00000565228 PSTPIP2Q9H939 334 aa10.61□□□□□ -0.71
VPS35-206ENST00000565228 VTA1Q9NP79 307 aa10.61□□□□□ -0.71
VPS35-206ENST00000565228 RTEL1Q9NZ71 1219 aa10.61□□□□□ -0.71
VPS35-206ENST00000565228 FAM184BQ9ULE4 1060 aa10.61□□□□□ -0.71
VPS35-206ENST00000565228 PCDHA6Q9UN73 950 aa10.61□□□□□ -0.71
VPS35-206ENST00000565228 KCNJ14Q9UNX9 436 aa10.61□□□□□ -0.71
VPS35-206ENST00000565228 PCDHA8Q9Y5H6 950 aa10.61□□□□□ -0.71
VPS35-206ENST00000565228 CUL9Q8IWT3 2517 aa10.61□□□□□ -0.71
VPS35-206ENST00000565228 CEP290O15078 2479 aa10.6□□□□□ -0.71
VPS35-206ENST00000565228 SCN10AQ9Y5Y9 1956 aa10.6□□□□□ -0.71
VPS35-206ENST00000565228 FAM205CA6NFA0 338 aa10.6□□□□□ -0.71
VPS35-206ENST00000565228 ATP9AO75110 1047 aa10.6□□□□□ -0.71
VPS35-206ENST00000565228 DUSP11O75319 330 aaKnown RBP10.6□□□□□ -0.71
VPS35-206ENST00000565228 TNFAIP2Q03169 654 aa10.6□□□□□ -0.71
VPS35-206ENST00000565228 ARHGAP1Q07960 439 aa10.6□□□□□ -0.71
VPS35-206ENST00000565228 PDE4DQ08499 809 aa10.6□□□□□ -0.71
VPS35-206ENST00000565228 PPP2R5BQ15173 497 aa10.6□□□□□ -0.71
VPS35-206ENST00000565228 DUSP28Q4G0W2 176 aa10.6□□□□□ -0.71
VPS35-206ENST00000565228 JAKMIP3Q5VZ66 844 aa10.6□□□□□ -0.71
VPS35-206ENST00000565228 CCDC83Q8IWF9 413 aa10.6□□□□□ -0.71
VPS35-206ENST00000565228 FERMT2Q96AC1 680 aa10.6□□□□□ -0.71
VPS35-206ENST00000565228 IWS1Q96ST2 819 aa10.6□□□□□ -0.71
VPS35-206ENST00000565228 WDR11Q9BZH6 1224 aa10.6□□□□□ -0.71
VPS35-206ENST00000565228 XPNPEP3Q9NQH7 507 aa10.6□□□□□ -0.71
VPS35-206ENST00000565228 MAP3K20Q9NYL2 800 aaKnown RBP10.6□□□□□ -0.71
VPS35-206ENST00000565228 ADD3Q9UEY8 706 aaKnown RBP10.6□□□□□ -0.71
VPS35-206ENST00000565228 DDX41Q9UJV9 622 aaKnown RBP10.6□□□□□ -0.71
VPS35-206ENST00000565228 LOC102724159A0A0B4J2E5 919 aa10.59□□□□□ -0.71
VPS35-206ENST00000565228 CCDC196A0A1B0GTZ2 297 aa10.59□□□□□ -0.71
VPS35-206ENST00000565228 ESYT2A0FGR8 921 aa10.59□□□□□ -0.71
VPS35-206ENST00000565228 DNM1LO00429 736 aa10.59□□□□□ -0.71
VPS35-206ENST00000565228 WNT7AO00755 349 aa10.59□□□□□ -0.71
VPS35-206ENST00000565228 DYNC1LI2O43237 492 aaPredicted RBP10.59□□□□□ -0.71
VPS35-206ENST00000565228 RARBP10826 455 aa10.59□□□□□ -0.71
VPS35-206ENST00000565228 CST5P28325 142 aaPredicted RBP10.59□□□□□ -0.71
VPS35-206ENST00000565228 ADCY7P51828 1080 aa10.59□□□□□ -0.71
VPS35-206ENST00000565228 FOSBP53539 338 aa10.59□□□□□ -0.71
VPS35-206ENST00000565228 SSRP1Q08945 709 aaKnown RBP10.59□□□□□ -0.71
VPS35-206ENST00000565228 PWP2Q15269 919 aaKnown RBP10.59□□□□□ -0.71
VPS35-206ENST00000565228 RABEP1Q15276 862 aa10.59□□□□□ -0.71
VPS35-206ENST00000565228 KCNA10Q16322 511 aa10.59□□□□□ -0.71
VPS35-206ENST00000565228 IQSEC1Q6DN90 963 aa10.59□□□□□ -0.71
VPS35-206ENST00000565228 PPP1R18Q6NYC8 613 aa10.59□□□□□ -0.71
VPS35-206ENST00000565228 TLK2Q86UE8 772 aa10.59□□□□□ -0.71
VPS35-206ENST00000565228 SAMD3Q8N6K7 520 aa10.59□□□□□ -0.71
VPS35-206ENST00000565228 ANKLE1Q8NAG6 615 aa10.59□□□□□ -0.71
VPS35-206ENST00000565228 SMARCC2Q8TAQ2 1214 aa10.59□□□□□ -0.71
VPS35-206ENST00000565228 INPP4AQ96PE3 977 aaPredicted RBP10.59□□□□□ -0.71
VPS35-206ENST00000565228 UIMC1Q96RL1 719 aa10.59□□□□□ -0.71
VPS35-206ENST00000565228 ANO3Q9BYT9 981 aa10.59□□□□□ -0.71
VPS35-206ENST00000565228 SENP6Q9GZR1 1112 aaPredicted RBP10.59□□□□□ -0.71
VPS35-206ENST00000565228 C11orf49Q9H6J7 331 aa10.59□□□□□ -0.71
VPS35-206ENST00000565228 LIMCH1Q9UPQ0 1083 aa10.59□□□□□ -0.71
VPS35-206ENST00000565228 PHF24Q9UPV7 400 aa10.59□□□□□ -0.71
VPS35-206ENST00000565228 UBIAD1Q9Y5Z9 338 aa10.59□□□□□ -0.71
VPS35-206ENST00000565228 STK36Q9NRP7 1315 aa10.58□□□□□ -0.71
VPS35-206ENST00000565228 TRIP12Q14669 1992 aaPredicted RBP10.58□□□□□ -0.72
VPS35-206ENST00000565228 MSCO60682 206 aa10.58□□□□□ -0.72
VPS35-206ENST00000565228 EIF3JO75822 258 aaKnown RBP10.58□□□□□ -0.72
VPS35-206ENST00000565228 ARP10275 920 aa10.58□□□□□ -0.72
VPS35-206ENST00000565228 TXNP10599 105 aaKnown RBP10.58□□□□□ -0.72
VPS35-206ENST00000565228 FXR1P51114 621 aaKnown RBP eCLIP10.58□□□□□ -0.72
VPS35-206ENST00000565228 ATN1P54259 1190 aaPredicted RBP10.58□□□□□ -0.72
VPS35-206ENST00000565228 PSMC6P62333 389 aa10.58□□□□□ -0.72
VPS35-206ENST00000565228 HIC1Q14526 733 aa10.58□□□□□ -0.72
VPS35-206ENST00000565228 ANKRD1Q15327 319 aa10.58□□□□□ -0.72
VPS35-206ENST00000565228 STXBP2Q15833 593 aa10.58□□□□□ -0.72
VPS35-206ENST00000565228 PCNX4Q63HM2 1172 aa10.58□□□□□ -0.72
VPS35-206ENST00000565228 POTEHQ6S545 545 aa10.58□□□□□ -0.72
VPS35-206ENST00000565228 TNFRSF25Q93038 417 aa10.58□□□□□ -0.72
VPS35-206ENST00000565228 PHF20Q9BVI0 1012 aa10.58□□□□□ -0.72
VPS35-206ENST00000565228 SPTBN5Q9NRC6 3674 aaKnown RBP10.58□□□□□ -0.72
VPS35-206ENST00000565228 WDR81Q562E7 1941 aa10.57□□□□□ -0.72
VPS35-206ENST00000565228 IGLV3-22A0A075B6J6 115 aa10.57□□□□□ -0.72
VPS35-206ENST00000565228 A0A1W2PQ45 241 aaPredicted RBP10.57□□□□□ -0.72
VPS35-206ENST00000565228 A0A1W2PQY0 241 aa10.57□□□□□ -0.72
VPS35-206ENST00000565228 SPATA31C2B4DYI2 1134 aa10.57□□□□□ -0.72
VPS35-206ENST00000565228 FAM86B1E9PN63 330 aa10.57□□□□□ -0.72
VPS35-206ENST00000565228 DEXIO95424 95 aa10.57□□□□□ -0.72
VPS35-206ENST00000565228 ASGR1P07306 291 aa10.57□□□□□ -0.72
VPS35-206ENST00000565228 FAM86B2P0C5J1 330 aa10.57□□□□□ -0.72
VPS35-206ENST00000565228 C6orf222P0C671 652 aaPredicted RBP10.57□□□□□ -0.72
VPS35-206ENST00000565228 UBA1P22314 1058 aaKnown RBP10.57□□□□□ -0.72
VPS35-206ENST00000565228 ITGB8P26012 769 aa10.57□□□□□ -0.72
VPS35-206ENST00000565228 ICAM3P32942 547 aa10.57□□□□□ -0.72
VPS35-206ENST00000565228 SREBF1P36956 1147 aa10.57□□□□□ -0.72
VPS35-206ENST00000565228 ACLYP53396 1101 aa10.57□□□□□ -0.72
VPS35-206ENST00000565228 SNX17Q15036 470 aa10.57□□□□□ -0.72
VPS35-206ENST00000565228 CXCL17Q6UXB2 119 aa10.57□□□□□ -0.72
VPS35-206ENST00000565228 SLC39A5Q6ZMH5 540 aa10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms