RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 NDUFAB1O14561 156 aa6.14□□□□□ -1.43
LIMA1-203ENST00000547825 SASH1O94885 1247 aa6.14□□□□□ -1.43
LIMA1-203ENST00000547825 USP5P45974 858 aa6.14□□□□□ -1.43
LIMA1-203ENST00000547825 PHKA2P46019 1235 aa6.14□□□□□ -1.43
LIMA1-203ENST00000547825 NDUFA8P51970 172 aa6.14□□□□□ -1.43
LIMA1-203ENST00000547825 IFFO1Q0D2I5 559 aa6.14□□□□□ -1.43
LIMA1-203ENST00000547825 NNTQ13423 1086 aa6.14□□□□□ -1.43
LIMA1-203ENST00000547825 CACNA2D4Q7Z3S7 1137 aa6.14□□□□□ -1.43
LIMA1-203ENST00000547825 CEP112Q8N8E3 955 aa6.14□□□□□ -1.43
LIMA1-203ENST00000547825 NLGN2Q8NFZ4 835 aa6.14□□□□□ -1.43
LIMA1-203ENST00000547825 XAGE3Q8WTP9 111 aa6.14□□□□□ -1.43
LIMA1-203ENST00000547825 GMLQ99445 158 aa6.14□□□□□ -1.43
LIMA1-203ENST00000547825 SLF1Q9BQI6 1058 aa6.14□□□□□ -1.43
LIMA1-203ENST00000547825 DBNDD2Q9BQY9 259 aa6.14□□□□□ -1.43
LIMA1-203ENST00000547825 ZKSCAN3Q9BRR0 538 aa6.14□□□□□ -1.43
LIMA1-203ENST00000547825 GJB4Q9NTQ9 266 aa6.14□□□□□ -1.43
LIMA1-203ENST00000547825 ZNF446Q9NWS9 450 aa6.14□□□□□ -1.43
LIMA1-203ENST00000547825 LRP2BPQ9P2M1 347 aa6.14□□□□□ -1.43
LIMA1-203ENST00000547825 RRP15Q9Y3B9 282 aaKnown RBP6.14□□□□□ -1.43
LIMA1-203ENST00000547825 SMIM23A6NLE4 172 aa6.14□□□□□ -1.43
LIMA1-203ENST00000547825 MYO1CO00159 1063 aa6.14□□□□□ -1.43
LIMA1-203ENST00000547825 IDEP14735 1019 aa6.14□□□□□ -1.43
LIMA1-203ENST00000547825 GPTP24298 496 aa6.14□□□□□ -1.43
LIMA1-203ENST00000547825 NF2P35240 595 aa6.14□□□□□ -1.43
LIMA1-203ENST00000547825 PLA2G4AP47712 749 aa6.14□□□□□ -1.43
LIMA1-203ENST00000547825 SSRP1Q08945 709 aaKnown RBP6.14□□□□□ -1.43
LIMA1-203ENST00000547825 SLC43A3Q8NBI5 491 aa6.14□□□□□ -1.43
LIMA1-203ENST00000547825 CCDC74AQ96AQ1 378 aa6.14□□□□□ -1.43
LIMA1-203ENST00000547825 GOLGA6L10A0A0M3HER8 536 aa6.13□□□□□ -1.43
LIMA1-203ENST00000547825 hCG_1642624A0A1W2PR95 340 aa6.13□□□□□ -1.43
LIMA1-203ENST00000547825 POLR2DO15514 142 aaKnown RBP6.13□□□□□ -1.43
LIMA1-203ENST00000547825 MRPS25P82663 173 aaKnown RBP6.13□□□□□ -1.43
LIMA1-203ENST00000547825 PRPF4BQ13523 1007 aaKnown RBP6.13□□□□□ -1.43
LIMA1-203ENST00000547825 IQCEQ6IPM2 695 aa6.13□□□□□ -1.43
LIMA1-203ENST00000547825 GBP6Q6ZN66 633 aa6.13□□□□□ -1.43
LIMA1-203ENST00000547825 DYDC1Q8WWB3 177 aa6.13□□□□□ -1.43
LIMA1-203ENST00000547825 EAF2Q96CJ1 260 aaPredicted RBP6.13□□□□□ -1.43
LIMA1-203ENST00000547825 GOLPH3LQ9H4A5 285 aa6.13□□□□□ -1.43
LIMA1-203ENST00000547825 WDR3Q9UNX4 943 aaKnown RBP eCLIP6.13□□□□□ -1.43
LIMA1-203ENST00000547825 FAN1Q9Y2M0 1017 aa6.13□□□□□ -1.43
LIMA1-203ENST00000547825 IRS2Q9Y4H2 1338 aa6.13□□□□□ -1.43
LIMA1-203ENST00000547825 FRMD3A2A2Y4 597 aa6.13□□□□□ -1.43
LIMA1-203ENST00000547825 TMCO5BA8MYB1 307 aa6.13□□□□□ -1.43
LIMA1-203ENST00000547825 AKR1B15C9JRZ8 316 aaPredicted RBP6.13□□□□□ -1.43
LIMA1-203ENST00000547825 MICAL2O94851 1124 aa6.13□□□□□ -1.43
LIMA1-203ENST00000547825 KRT18P05783 430 aaKnown RBP6.13□□□□□ -1.43
LIMA1-203ENST00000547825 SNRPA1P09661 255 aaKnown RBP6.13□□□□□ -1.43
LIMA1-203ENST00000547825 EIF4BP23588 611 aaKnown RBP6.13□□□□□ -1.43
LIMA1-203ENST00000547825 GRNP28799 593 aaKnown RBP6.13□□□□□ -1.43
LIMA1-203ENST00000547825 TGFB2P61812 414 aa6.13□□□□□ -1.43
LIMA1-203ENST00000547825 CCDC122Q5T0U0 273 aa6.13□□□□□ -1.43
LIMA1-203ENST00000547825 PLA2G4DQ86XP0 818 aa6.13□□□□□ -1.43
LIMA1-203ENST00000547825 TDRD7Q8NHU6 1098 aaKnown RBP6.13□□□□□ -1.43
LIMA1-203ENST00000547825 NCOA7Q8NI08 942 aa6.13□□□□□ -1.43
LIMA1-203ENST00000547825 FAM76AQ8TAV0 307 aa6.13□□□□□ -1.43
LIMA1-203ENST00000547825 AFAP1L1Q8TED9 768 aa6.13□□□□□ -1.43
LIMA1-203ENST00000547825 TAF4BQ92750 862 aa6.13□□□□□ -1.43
LIMA1-203ENST00000547825 CCDC114Q96M63 670 aa6.13□□□□□ -1.43
LIMA1-203ENST00000547825 CLIC6Q96NY7 704 aa6.13□□□□□ -1.43
LIMA1-203ENST00000547825 TRIM56Q9BRZ2 755 aaKnown RBP6.13□□□□□ -1.43
LIMA1-203ENST00000547825 AKAP11Q9UKA4 1901 aa6.13□□□□□ -1.43
LIMA1-203ENST00000547825 PCDHA7Q9UN72 937 aa6.13□□□□□ -1.43
LIMA1-203ENST00000547825 ABCC12Q96J65 1359 aa6.13□□□□□ -1.43
LIMA1-203ENST00000547825 NEFHP12036 1026 aa6.13□□□□□ -1.43
LIMA1-203ENST00000547825 NOP2P46087 812 aaKnown RBP6.13□□□□□ -1.43
LIMA1-203ENST00000547825 ST5P78524 1137 aa6.13□□□□□ -1.43
LIMA1-203ENST00000547825 KCNC4Q03721 635 aa6.13□□□□□ -1.43
LIMA1-203ENST00000547825 NAA25Q14CX7 972 aa6.13□□□□□ -1.43
LIMA1-203ENST00000547825 LONRF2Q1L5Z9 754 aa6.13□□□□□ -1.43
LIMA1-203ENST00000547825 EPHA10Q5JZY3 1008 aa6.13□□□□□ -1.43
LIMA1-203ENST00000547825 ANO1Q5XXA6 986 aa6.13□□□□□ -1.43
LIMA1-203ENST00000547825 MRFAP1L1Q96HT8 127 aa6.13□□□□□ -1.43
LIMA1-203ENST00000547825 TRIM47Q96LD4 638 aa6.13□□□□□ -1.43
LIMA1-203ENST00000547825 ZSCAN10Q96SZ4 725 aaPredicted RBP6.13□□□□□ -1.43
LIMA1-203ENST00000547825 NACAP1Q9BZK3 213 aa6.13□□□□□ -1.43
LIMA1-203ENST00000547825 PPP2R2CQ9Y2T4 447 aa6.13□□□□□ -1.43
LIMA1-203ENST00000547825 LTBP3Q9NS15 1303 aa6.12□□□□□ -1.43
LIMA1-203ENST00000547825 OTOFQ9HC10 1997 aa6.12□□□□□ -1.43
LIMA1-203ENST00000547825 TLDC2A0PJX2 215 aa6.12□□□□□ -1.43
LIMA1-203ENST00000547825 ENC1O14682 589 aa6.12□□□□□ -1.43
LIMA1-203ENST00000547825 ARHGAP6O43182 974 aa6.12□□□□□ -1.43
LIMA1-203ENST00000547825 ZBTB43O43298 467 aa6.12□□□□□ -1.43
LIMA1-203ENST00000547825 HSF2BPO75031 334 aa6.12□□□□□ -1.43
LIMA1-203ENST00000547825 FGRP09769 529 aa6.12□□□□□ -1.43
LIMA1-203ENST00000547825 CALRP27797 417 aaKnown RBP6.12□□□□□ -1.43
LIMA1-203ENST00000547825 INPP5BP32019 993 aa6.12□□□□□ -1.43
LIMA1-203ENST00000547825 CCT5P48643 541 aa6.12□□□□□ -1.43
LIMA1-203ENST00000547825 UBXN1Q04323 297 aa6.12□□□□□ -1.43
LIMA1-203ENST00000547825 SLC10A5Q5PT55 438 aa6.12□□□□□ -1.43
LIMA1-203ENST00000547825 PARD6BQ9BYG5 372 aa6.12□□□□□ -1.43
LIMA1-203ENST00000547825 KCNH3Q9ULD8 1083 aa6.12□□□□□ -1.43
LIMA1-203ENST00000547825 CLIC4Q9Y696 253 aa6.12□□□□□ -1.43
LIMA1-203ENST00000547825 RTL9Q8NET4 1388 aa6.12□□□□□ -1.43
LIMA1-203ENST00000547825 TTC41PQ6P2S7 1318 aa6.12□□□□□ -1.43
LIMA1-203ENST00000547825 GOLGA6CA6NDK9 693 aa6.12□□□□□ -1.43
LIMA1-203ENST00000547825 USO1O60763 962 aaKnown RBP6.12□□□□□ -1.43
LIMA1-203ENST00000547825 CPNE3O75131 537 aaKnown RBP6.12□□□□□ -1.43
LIMA1-203ENST00000547825 ERLIN2O94905 339 aa6.12□□□□□ -1.43
LIMA1-203ENST00000547825 ZBTB7AO95365 584 aa6.12□□□□□ -1.43
LIMA1-203ENST00000547825 CTDNEP1O95476 244 aa6.12□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 72.6 ms