RNA–Protein interactions for RNA: ENST00000517578.1

HMGB1P19-201, Transcript of high mobility group box 1 pseudogene 19, humanhuman

BASIC

Gene HMGB1P19, Length 577 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P19-201ENST00000517578 FUT8Q9BYC5 575 aa5.4□□□□□ -1.54
HMGB1P19-201ENST00000517578 GSX1Q9H4S2 264 aaPredicted RBP5.4□□□□□ -1.54
HMGB1P19-201ENST00000517578 PAK6Q9NQU5 681 aaPredicted RBP5.4□□□□□ -1.54
HMGB1P19-201ENST00000517578 PAPOLBQ9NRJ5 636 aaKnown RBP5.4□□□□□ -1.54
HMGB1P19-201ENST00000517578 C1GALT1Q9NS00 363 aa5.4□□□□□ -1.54
HMGB1P19-201ENST00000517578 EXOC1Q9NV70 894 aa5.4□□□□□ -1.54
HMGB1P19-201ENST00000517578 ZC3H7BQ9UGR2 993 aaKnown RBP5.4□□□□□ -1.54
HMGB1P19-201ENST00000517578 CIDEBQ9UHD4 219 aa5.4□□□□□ -1.54
HMGB1P19-201ENST00000517578 DDX25Q9UHL0 483 aaKnown RBP5.4□□□□□ -1.54
HMGB1P19-201ENST00000517578 PAIP2BQ9ULR5 123 aaKnown RBP5.4□□□□□ -1.54
HMGB1P19-201ENST00000517578 TPX2Q9ULW0 747 aaKnown RBP5.4□□□□□ -1.54
HMGB1P19-201ENST00000517578 RPGRIP1LQ68CZ1 1315 aa5.4□□□□□ -1.55
HMGB1P19-201ENST00000517578 SHROOM2Q13796 1616 aa5.4□□□□□ -1.55
HMGB1P19-201ENST00000517578 USP47Q96K76 1375 aa5.4□□□□□ -1.55
HMGB1P19-201ENST00000517578 FHOD3Q2V2M9 1422 aa5.4□□□□□ -1.55
HMGB1P19-201ENST00000517578 RPRD2Q5VT52 1461 aaKnown RBP5.39□□□□□ -1.55
HMGB1P19-201ENST00000517578 TOP2AP11388 1531 aaKnown RBP5.39□□□□□ -1.55
HMGB1P19-201ENST00000517578 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP5.39□□□□□ -1.55
HMGB1P19-201ENST00000517578 GOLGA6L10A0A0M3HER8 536 aa5.39□□□□□ -1.55
HMGB1P19-201ENST00000517578 SRRM3A6NNA2 597 aaPredicted RBP5.39□□□□□ -1.55
HMGB1P19-201ENST00000517578 DYNC1LI2O43237 492 aaPredicted RBP5.39□□□□□ -1.55
HMGB1P19-201ENST00000517578 CDC45O75419 566 aa5.39□□□□□ -1.55
HMGB1P19-201ENST00000517578 TPPPO94811 219 aa5.39□□□□□ -1.55
HMGB1P19-201ENST00000517578 PENKP01210 267 aaPredicted RBP5.39□□□□□ -1.55
HMGB1P19-201ENST00000517578 HCLS1P14317 486 aaPredicted RBP5.39□□□□□ -1.55
HMGB1P19-201ENST00000517578 ITGB5P18084 799 aa5.39□□□□□ -1.55
HMGB1P19-201ENST00000517578 ATP5JP18859 108 aa5.39□□□□□ -1.55
HMGB1P19-201ENST00000517578 TRIM21P19474 475 aaKnown RBP5.39□□□□□ -1.55
HMGB1P19-201ENST00000517578 COPB2P35606 906 aa5.39□□□□□ -1.55
HMGB1P19-201ENST00000517578 RANBP1P43487 201 aa5.39□□□□□ -1.55
HMGB1P19-201ENST00000517578 LIG3P49916 1009 aa5.39□□□□□ -1.55
HMGB1P19-201ENST00000517578 ETF1P62495 437 aaKnown RBP5.39□□□□□ -1.55
HMGB1P19-201ENST00000517578 CCDC15Q0P6D6 951 aa5.39□□□□□ -1.55
HMGB1P19-201ENST00000517578 MAP7Q14244 749 aa5.39□□□□□ -1.55
HMGB1P19-201ENST00000517578 GRM2Q14416 872 aa5.39□□□□□ -1.55
HMGB1P19-201ENST00000517578 LONRF2Q1L5Z9 754 aa5.39□□□□□ -1.55
HMGB1P19-201ENST00000517578 LARP7Q4G0J3 582 aaKnown RBP eCLIP5.39□□□□□ -1.55
HMGB1P19-201ENST00000517578 AKAP4Q5JQC9 854 aa5.39□□□□□ -1.55
HMGB1P19-201ENST00000517578 CPLX2Q6PUV4 134 aaKnown RBP5.39□□□□□ -1.55
HMGB1P19-201ENST00000517578 DYMQ7RTS9 669 aa5.39□□□□□ -1.55
HMGB1P19-201ENST00000517578 RSPH3Q86UC2 560 aa5.39□□□□□ -1.55
HMGB1P19-201ENST00000517578 SESTD1Q86VW0 696 aa5.39□□□□□ -1.55
HMGB1P19-201ENST00000517578 HOMER1Q86YM7 354 aa5.39□□□□□ -1.55
HMGB1P19-201ENST00000517578 WFDC3Q8IUB2 231 aa5.39□□□□□ -1.55
HMGB1P19-201ENST00000517578 ARHGAP45Q92619 1136 aa5.39□□□□□ -1.55
HMGB1P19-201ENST00000517578 PPP2R3CQ969Q6 453 aa5.39□□□□□ -1.55
HMGB1P19-201ENST00000517578 GCC1Q96CN9 775 aa5.39□□□□□ -1.55
HMGB1P19-201ENST00000517578 RBM41Q96IZ5 413 aaKnown RBP5.39□□□□□ -1.55
HMGB1P19-201ENST00000517578 FAM81BQ96LP2 452 aa5.39□□□□□ -1.55
HMGB1P19-201ENST00000517578 SCLT1Q96NL6 688 aa5.39□□□□□ -1.55
HMGB1P19-201ENST00000517578 SETDB2Q96T68 719 aa5.39□□□□□ -1.55
HMGB1P19-201ENST00000517578 SLX1AQ9BQ83 275 aa5.39□□□□□ -1.55
HMGB1P19-201ENST00000517578 TSGA10Q9BZW7 698 aa5.39□□□□□ -1.55
HMGB1P19-201ENST00000517578 MMADHCQ9H3L0 296 aaPredicted RBP5.39□□□□□ -1.55
HMGB1P19-201ENST00000517578 ZNF576Q9H609 170 aa5.39□□□□□ -1.55
HMGB1P19-201ENST00000517578 LMCD1Q9NZU5 365 aa5.39□□□□□ -1.55
HMGB1P19-201ENST00000517578 DDX19BQ9UMR2 479 aa5.39□□□□□ -1.55
HMGB1P19-201ENST00000517578 CAPN7Q9Y6W3 813 aa5.39□□□□□ -1.55
HMGB1P19-201ENST00000517578 TMEM238LA0A1B0GVL6 79 aa5.38□□□□□ -1.55
HMGB1P19-201ENST00000517578 TARSL2A2RTX5 802 aaKnown RBP5.38□□□□□ -1.55
HMGB1P19-201ENST00000517578 GOLGA8AA7E2F4 631 aa5.38□□□□□ -1.55
HMGB1P19-201ENST00000517578 MEFVO15553 781 aaPredicted RBP5.38□□□□□ -1.55
HMGB1P19-201ENST00000517578 KDM1AO60341 852 aa5.38□□□□□ -1.55
HMGB1P19-201ENST00000517578 TADA3O75528 432 aa5.38□□□□□ -1.55
HMGB1P19-201ENST00000517578 MYL1P05976 194 aa5.38□□□□□ -1.55
HMGB1P19-201ENST00000517578 MSL3P1P0C860 447 aa5.38□□□□□ -1.55
HMGB1P19-201ENST00000517578 TROVE2P10155 538 aaKnown RBP eCLIP5.38□□□□□ -1.55
HMGB1P19-201ENST00000517578 ZNF24P17028 368 aa5.38□□□□□ -1.55
HMGB1P19-201ENST00000517578 NAT1P18440 290 aa5.38□□□□□ -1.55
HMGB1P19-201ENST00000517578 STIP1P31948 543 aaKnown RBP5.38□□□□□ -1.55
HMGB1P19-201ENST00000517578 KIF5BP33176 963 aa5.38□□□□□ -1.55
HMGB1P19-201ENST00000517578 CCT6AP40227 531 aaKnown RBP5.38□□□□□ -1.55
HMGB1P19-201ENST00000517578 ZNF157P51786 506 aaPredicted RBP5.38□□□□□ -1.55
HMGB1P19-201ENST00000517578 NEK2P51955 445 aa5.38□□□□□ -1.55
HMGB1P19-201ENST00000517578 FCGRTP55899 365 aa5.38□□□□□ -1.55
HMGB1P19-201ENST00000517578 NUCB1Q02818 461 aa5.38□□□□□ -1.55
HMGB1P19-201ENST00000517578 PPFIA1Q13136 1202 aa5.38□□□□□ -1.55
HMGB1P19-201ENST00000517578 PABPC4Q13310 644 aaKnown RBP eCLIP5.38□□□□□ -1.55
HMGB1P19-201ENST00000517578 FZD5Q13467 585 aa5.38□□□□□ -1.55
HMGB1P19-201ENST00000517578 MAP3K11Q16584 847 aa5.38□□□□□ -1.55
HMGB1P19-201ENST00000517578 WHAMMP3Q1A5X7 153 aa5.38□□□□□ -1.55
HMGB1P19-201ENST00000517578 USH1GQ495M9 461 aa5.38□□□□□ -1.55
HMGB1P19-201ENST00000517578 CCDC40Q4G0X9 1142 aa5.38□□□□□ -1.55
HMGB1P19-201ENST00000517578 INTS3Q68E01 1043 aaKnown RBP5.38□□□□□ -1.55
HMGB1P19-201ENST00000517578 KCNV1Q6PIU1 500 aa5.38□□□□□ -1.55
HMGB1P19-201ENST00000517578 CWC27Q6UX04 472 aaKnown RBP5.38□□□□□ -1.55
HMGB1P19-201ENST00000517578 SND1Q7KZF4 910 aaKnown RBP eCLIP5.38□□□□□ -1.55
HMGB1P19-201ENST00000517578 ARMC9Q7Z3E5 817 aa5.38□□□□□ -1.55
HMGB1P19-201ENST00000517578 APBB1IPQ7Z5R6 666 aaPredicted RBP5.38□□□□□ -1.55
HMGB1P19-201ENST00000517578 LRRC49Q8IUZ0 686 aa5.38□□□□□ -1.55
HMGB1P19-201ENST00000517578 ANKRD13AQ8IZ07 590 aa5.38□□□□□ -1.55
HMGB1P19-201ENST00000517578 ARHGAP18Q8N392 663 aa5.38□□□□□ -1.55
HMGB1P19-201ENST00000517578 GALNT15Q8N3T1 639 aa5.38□□□□□ -1.55
HMGB1P19-201ENST00000517578 SMYD1Q8NB12 490 aa5.38□□□□□ -1.55
HMGB1P19-201ENST00000517578 CNNM3Q8NE01 707 aa5.38□□□□□ -1.55
HMGB1P19-201ENST00000517578 FLCNQ8NFG4 579 aa5.38□□□□□ -1.55
HMGB1P19-201ENST00000517578 LEO1Q8WVC0 666 aaPredicted RBP5.38□□□□□ -1.55
HMGB1P19-201ENST00000517578 LMBR1Q8WVP7 490 aa5.38□□□□□ -1.55
HMGB1P19-201ENST00000517578 SMARCC1Q92922 1105 aaPredicted RBP5.38□□□□□ -1.55
HMGB1P19-201ENST00000517578 CUL5Q93034 780 aa5.38□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms