RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 FAM160B2Q86V87 743 aa9.74□□□□□ -0.85
LIMCH1-209ENST00000509277 LEO1Q8WVC0 666 aaPredicted RBP9.74□□□□□ -0.85
LIMCH1-209ENST00000509277 ZIC5Q96T25 663 aa9.74□□□□□ -0.85
LIMCH1-209ENST00000509277 PHF20Q9BVI0 1012 aa9.74□□□□□ -0.85
LIMCH1-209ENST00000509277 ASCC2Q9H1I8 757 aaPredicted RBP9.74□□□□□ -0.85
LIMCH1-209ENST00000509277 JRKLQ9Y4A0 524 aa9.74□□□□□ -0.85
LIMCH1-209ENST00000509277 C19orf81C9J6K1 198 aa9.73□□□□□ -0.85
LIMCH1-209ENST00000509277 PDHXO00330 501 aa9.73□□□□□ -0.85
LIMCH1-209ENST00000509277 SPTLC2O15270 562 aa9.73□□□□□ -0.85
LIMCH1-209ENST00000509277 TDP2O95551 362 aa9.73□□□□□ -0.85
LIMCH1-209ENST00000509277 CASQ1P31415 396 aa9.73□□□□□ -0.85
LIMCH1-209ENST00000509277 STAT3P40763 770 aa9.73□□□□□ -0.85
LIMCH1-209ENST00000509277 PRR16Q569H4 304 aa9.73□□□□□ -0.85
LIMCH1-209ENST00000509277 DNAJC21Q5F1R6 531 aaKnown RBP9.73□□□□□ -0.85
LIMCH1-209ENST00000509277 FSIP1Q8NA03 581 aa9.73□□□□□ -0.85
LIMCH1-209ENST00000509277 PPP1R9AQ9ULJ8 1098 aa9.73□□□□□ -0.85
LIMCH1-209ENST00000509277 RRP15Q9Y3B9 282 aaKnown RBP9.73□□□□□ -0.85
LIMCH1-209ENST00000509277 PLIN4Q96Q06 1357 aa9.73□□□□□ -0.85
LIMCH1-209ENST00000509277 MYH6P13533 1939 aa9.73□□□□□ -0.85
LIMCH1-209ENST00000509277 TESPA1A2RU30 521 aaPredicted RBP9.73□□□□□ -0.85
LIMCH1-209ENST00000509277 SPDYE5A6NIY4 337 aa9.73□□□□□ -0.85
LIMCH1-209ENST00000509277 SSBP05455 408 aaKnown RBP eCLIP9.73□□□□□ -0.85
LIMCH1-209ENST00000509277 PNMA6AP0CW24 399 aaPredicted RBP9.73□□□□□ -0.85
LIMCH1-209ENST00000509277 PPATQ06203 517 aa9.73□□□□□ -0.85
LIMCH1-209ENST00000509277 SMC1BQ8NDV3 1235 aa9.73□□□□□ -0.85
LIMCH1-209ENST00000509277 RBM46Q8TBY0 533 aaKnown RBP9.73□□□□□ -0.85
LIMCH1-209ENST00000509277 STAMQ92783 540 aa9.73□□□□□ -0.85
LIMCH1-209ENST00000509277 TCEAL9Q9UHQ7 104 aa9.73□□□□□ -0.85
LIMCH1-209ENST00000509277 ZNF112Q9UJU3 913 aa9.73□□□□□ -0.85
LIMCH1-209ENST00000509277 PCDHA6Q9UN73 950 aa9.73□□□□□ -0.85
LIMCH1-209ENST00000509277 PCDHA8Q9Y5H6 950 aa9.73□□□□□ -0.85
LIMCH1-209ENST00000509277 STK36Q9NRP7 1315 aa9.73□□□□□ -0.85
LIMCH1-209ENST00000509277 GCOM1H8Y6P7 765 aaPredicted RBP9.73□□□□□ -0.85
LIMCH1-209ENST00000509277 VWA5AO00534 786 aa9.73□□□□□ -0.85
LIMCH1-209ENST00000509277 AOC2O75106 756 aa9.73□□□□□ -0.85
LIMCH1-209ENST00000509277 PGK2P07205 417 aa9.73□□□□□ -0.85
LIMCH1-209ENST00000509277 POLR2MP0CAP2 368 aa9.73□□□□□ -0.85
LIMCH1-209ENST00000509277 SNHG28P0DPA3 235 aa9.73□□□□□ -0.85
LIMCH1-209ENST00000509277 ZNF75DP51815 510 aa9.73□□□□□ -0.85
LIMCH1-209ENST00000509277 RCAN1P53805 252 aa9.73□□□□□ -0.85
LIMCH1-209ENST00000509277 PTGDRQ13258 359 aa9.73□□□□□ -0.85
LIMCH1-209ENST00000509277 TAF1CQ15572 869 aaPredicted RBP9.73□□□□□ -0.85
LIMCH1-209ENST00000509277 CCDC73Q6ZRK6 1079 aa9.73□□□□□ -0.85
LIMCH1-209ENST00000509277 TXLNBQ8N3L3 684 aa9.73□□□□□ -0.85
LIMCH1-209ENST00000509277 PUF60Q9UHX1 559 aaKnown RBP9.73□□□□□ -0.85
LIMCH1-209ENST00000509277 TSKSQ9UJT2 592 aa9.73□□□□□ -0.85
LIMCH1-209ENST00000509277 KIF3CO14782 793 aa9.72□□□□□ -0.85
LIMCH1-209ENST00000509277 ITGBL1O95965 494 aaPredicted RBP9.72□□□□□ -0.85
LIMCH1-209ENST00000509277 OSBPP22059 807 aa9.72□□□□□ -0.85
LIMCH1-209ENST00000509277 BAATQ14032 418 aaPredicted RBP9.72□□□□□ -0.85
LIMCH1-209ENST00000509277 HSP90B2PQ58FF3 399 aa9.72□□□□□ -0.85
LIMCH1-209ENST00000509277 BRAPQ7Z569 592 aa9.72□□□□□ -0.85
LIMCH1-209ENST00000509277 ERO1AQ96HE7 468 aa9.72□□□□□ -0.85
LIMCH1-209ENST00000509277 SCAND2PQ9GZW5 306 aaPredicted RBP9.72□□□□□ -0.85
LIMCH1-209ENST00000509277 HOXC10Q9NYD6 342 aa9.72□□□□□ -0.85
LIMCH1-209ENST00000509277 MRPL11Q9Y3B7 192 aaKnown RBP9.72□□□□□ -0.85
LIMCH1-209ENST00000509277 SIPA1L1O43166 1804 aa9.72□□□□□ -0.85
LIMCH1-209ENST00000509277 ABCB11O95342 1321 aa9.72□□□□□ -0.85
LIMCH1-209ENST00000509277 CTIFO43310 598 aaKnown RBP9.72□□□□□ -0.85
LIMCH1-209ENST00000509277 HERVK_113P62684 666 aa9.72□□□□□ -0.85
LIMCH1-209ENST00000509277 GRIN1Q05586 938 aa9.72□□□□□ -0.85
LIMCH1-209ENST00000509277 SMC1AQ14683 1233 aaKnown RBP9.72□□□□□ -0.85
LIMCH1-209ENST00000509277 ICE2Q659A1 982 aa9.72□□□□□ -0.85
LIMCH1-209ENST00000509277 WDR18Q9BV38 432 aa9.72□□□□□ -0.85
LIMCH1-209ENST00000509277 R3HDMLQ9H3Y0 253 aa9.72□□□□□ -0.85
LIMCH1-209ENST00000509277 SAMM50Q9Y512 469 aa9.72□□□□□ -0.85
LIMCH1-209ENST00000509277 SPDYE16A6NNV3 312 aaPredicted RBP9.72□□□□□ -0.85
LIMCH1-209ENST00000509277 BTBD19C9JJ37 291 aa9.72□□□□□ -0.85
LIMCH1-209ENST00000509277 TMEM132BQ14DG7 1078 aa9.72□□□□□ -0.85
LIMCH1-209ENST00000509277 AXDND1Q5T1B0 1012 aaPredicted RBP9.72□□□□□ -0.85
LIMCH1-209ENST00000509277 RNF207Q6ZRF8 634 aa9.72□□□□□ -0.85
LIMCH1-209ENST00000509277 AOPEPQ8N6M6 819 aa9.72□□□□□ -0.85
LIMCH1-209ENST00000509277 MYCBPQ99417 103 aaPredicted RBP9.72□□□□□ -0.85
LIMCH1-209ENST00000509277 ANO3Q9BYT9 981 aa9.72□□□□□ -0.85
LIMCH1-209ENST00000509277 EFCC1Q9HA90 598 aa9.72□□□□□ -0.85
LIMCH1-209ENST00000509277 SFPQP23246 707 aaKnown RBP eCLIP9.71□□□□□ -0.85
LIMCH1-209ENST00000509277 ARHGEF16Q5VV41 709 aa9.71□□□□□ -0.85
LIMCH1-209ENST00000509277 RGMBQ6NW40 437 aa9.71□□□□□ -0.85
LIMCH1-209ENST00000509277 CYP2W1Q8TAV3 490 aa9.71□□□□□ -0.85
LIMCH1-209ENST00000509277 PP2D1A8MPX8 630 aa9.71□□□□□ -0.86
LIMCH1-209ENST00000509277 TOMM70O94826 608 aa9.71□□□□□ -0.86
LIMCH1-209ENST00000509277 BRD2P25440 801 aaKnown RBP9.71□□□□□ -0.86
LIMCH1-209ENST00000509277 CYP2C19P33261 490 aa9.71□□□□□ -0.86
LIMCH1-209ENST00000509277 TECP42680 631 aa9.71□□□□□ -0.86
LIMCH1-209ENST00000509277 LIG3P49916 1009 aa9.71□□□□□ -0.86
LIMCH1-209ENST00000509277 RPS6P62753 249 aaKnown RBP9.71□□□□□ -0.86
LIMCH1-209ENST00000509277 MAP3K10Q02779 954 aa9.71□□□□□ -0.86
LIMCH1-209ENST00000509277 SF3A3Q12874 501 aaKnown RBP eCLIP9.71□□□□□ -0.86
LIMCH1-209ENST00000509277 PPIL2Q13356 520 aa9.71□□□□□ -0.86
LIMCH1-209ENST00000509277 RILPL1Q5EBL4 403 aa9.71□□□□□ -0.86
LIMCH1-209ENST00000509277 CT47A1Q5JQC4 288 aaPredicted RBP9.71□□□□□ -0.86
LIMCH1-209ENST00000509277 FOXR1Q6PIV2 292 aa9.71□□□□□ -0.86
LIMCH1-209ENST00000509277 CATSPERGQ6ZRH7 1159 aa9.71□□□□□ -0.86
LIMCH1-209ENST00000509277 FASTKD5Q7L8L6 764 aaKnown RBP9.71□□□□□ -0.86
LIMCH1-209ENST00000509277 NEK8Q86SG6 692 aa9.71□□□□□ -0.86
LIMCH1-209ENST00000509277 BRI3BPQ8WY22 251 aa9.71□□□□□ -0.86
LIMCH1-209ENST00000509277 FOXP1Q9H334 677 aaPredicted RBP9.71□□□□□ -0.86
LIMCH1-209ENST00000509277 IVNS1ABPQ9Y6Y0 642 aa9.71□□□□□ -0.86
LIMCH1-209ENST00000509277 ZNF646O15015 1829 aaPredicted RBP9.7□□□□□ -0.86
LIMCH1-209ENST00000509277 CETPP11597 493 aa9.7□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms