RNA–Protein interactions for RNA: ENST00000464493.5

SQSTM1-205, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 532 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-205ENST00000464493 STK36Q9NRP7 1315 aa16.64■□□□□ 0.25
SQSTM1-205ENST00000464493 SYNRGQ9UMZ2 1314 aa16.64■□□□□ 0.25
SQSTM1-205ENST00000464493 KIAA1217Q5T5P2 1943 aa16.63■□□□□ 0.25
SQSTM1-205ENST00000464493 DTNBO60941 627 aa16.63■□□□□ 0.25
SQSTM1-205ENST00000464493 ADAMTS4O75173 837 aa16.63■□□□□ 0.25
SQSTM1-205ENST00000464493 TXNP10599 105 aaKnown RBP16.63■□□□□ 0.25
SQSTM1-205ENST00000464493 CLK2P49760 499 aaKnown RBP16.63■□□□□ 0.25
SQSTM1-205ENST00000464493 GJA9P57773 515 aa16.63■□□□□ 0.25
SQSTM1-205ENST00000464493 TTLL4Q14679 1199 aa16.63■□□□□ 0.25
SQSTM1-205ENST00000464493 PCNX4Q63HM2 1172 aa16.63■□□□□ 0.25
SQSTM1-205ENST00000464493 XRRA1Q6P2D8 792 aa16.63■□□□□ 0.25
SQSTM1-205ENST00000464493 NSUN7Q8NE18 718 aaKnown RBP16.63■□□□□ 0.25
SQSTM1-205ENST00000464493 BICD2Q8TD16 824 aa16.63■□□□□ 0.25
SQSTM1-205ENST00000464493 EHMT1Q9H9B1 1298 aa16.63■□□□□ 0.25
SQSTM1-205ENST00000464493 ORC3Q9UBD5 711 aaPredicted RBP16.63■□□□□ 0.25
SQSTM1-205ENST00000464493 Q9Y3F1 56 aa16.63■□□□□ 0.25
SQSTM1-205ENST00000464493 KBTBD13C9JR72 458 aa16.62■□□□□ 0.25
SQSTM1-205ENST00000464493 NKRFO15226 690 aaKnown RBP eCLIP16.62■□□□□ 0.254e-8■□□□□ 9.4
SQSTM1-205ENST00000464493 DYNC1LI2O43237 492 aaPredicted RBP16.62■□□□□ 0.25
SQSTM1-205ENST00000464493 STAM2O75886 525 aa16.62■□□□□ 0.25
SQSTM1-205ENST00000464493 C6orf222P0C671 652 aaPredicted RBP16.62■□□□□ 0.25
SQSTM1-205ENST00000464493 NLRP5P59047 1200 aa16.62■□□□□ 0.25
SQSTM1-205ENST00000464493 MRPS9P82933 396 aaKnown RBP16.62■□□□□ 0.25
SQSTM1-205ENST00000464493 ST3GAL1Q11201 340 aa16.62■□□□□ 0.25
SQSTM1-205ENST00000464493 AP3B2Q13367 1082 aa16.62■□□□□ 0.25
SQSTM1-205ENST00000464493 TLK2Q86UE8 772 aa16.62■□□□□ 0.25
SQSTM1-205ENST00000464493 CCDC83Q8IWF9 413 aa16.62■□□□□ 0.25
SQSTM1-205ENST00000464493 FAM177A1Q8N128 213 aaPredicted RBP16.62■□□□□ 0.25
SQSTM1-205ENST00000464493 KLHDC9Q8NEP7 349 aa16.62■□□□□ 0.25
SQSTM1-205ENST00000464493 WASF1Q92558 559 aa16.62■□□□□ 0.25
SQSTM1-205ENST00000464493 ZFP91Q96JP5 570 aaPredicted RBP16.62■□□□□ 0.25
SQSTM1-205ENST00000464493 AIFM3Q96NN9 605 aa16.62■□□□□ 0.25
SQSTM1-205ENST00000464493 AP5M1Q9H0R1 490 aa16.62■□□□□ 0.25
SQSTM1-205ENST00000464493 UPF3AQ9H1J1 476 aaKnown RBP16.62■□□□□ 0.25
SQSTM1-205ENST00000464493 C11orf49Q9H6J7 331 aa16.62■□□□□ 0.25
SQSTM1-205ENST00000464493 TMEM260Q9NX78 707 aa16.62■□□□□ 0.25
SQSTM1-205ENST00000464493 RTEL1Q9NZ71 1219 aa16.62■□□□□ 0.25
SQSTM1-205ENST00000464493 RGS20O76081 388 aa16.61■□□□□ 0.25
SQSTM1-205ENST00000464493 ARIH2O95376 493 aa16.61■□□□□ 0.25
SQSTM1-205ENST00000464493 COL6A1P12109 1028 aa16.61■□□□□ 0.25
SQSTM1-205ENST00000464493 FDPSP14324 419 aaKnown RBP16.61■□□□□ 0.25
SQSTM1-205ENST00000464493 XBP1P17861 261 aa16.61■□□□□ 0.25
SQSTM1-205ENST00000464493 PTGS1P23219 599 aa16.61■□□□□ 0.25
SQSTM1-205ENST00000464493 MCM2P49736 904 aa16.61■□□□□ 0.25
SQSTM1-205ENST00000464493 JAKMIP3Q5VZ66 844 aa16.61■□□□□ 0.25
SQSTM1-205ENST00000464493 MCTP2Q6DN12 878 aa16.61■□□□□ 0.25
SQSTM1-205ENST00000464493 CCDC62Q6P9F0 684 aa16.61■□□□□ 0.25
SQSTM1-205ENST00000464493 KCNV1Q6PIU1 500 aa16.61■□□□□ 0.25
SQSTM1-205ENST00000464493 REXO1Q8N1G1 1221 aaKnown RBP16.61■□□□□ 0.25
SQSTM1-205ENST00000464493 PGBD1Q96JS3 809 aa16.61■□□□□ 0.25
SQSTM1-205ENST00000464493 TSEN34Q9BSV6 310 aaKnown RBP16.61■□□□□ 0.25
SQSTM1-205ENST00000464493 DDX41Q9UJV9 622 aaKnown RBP16.61■□□□□ 0.25
SQSTM1-205ENST00000464493 MRVI1Q9Y6F6 885 aa16.61■□□□□ 0.25
SQSTM1-205ENST00000464493 MYADML2A6NDP7 307 aa16.6■□□□□ 0.25
SQSTM1-205ENST00000464493 ADAMTS3O15072 1205 aa16.6■□□□□ 0.25
SQSTM1-205ENST00000464493 CTAGE5O15320 804 aa16.6■□□□□ 0.25
SQSTM1-205ENST00000464493 JAK2O60674 1132 aa16.6■□□□□ 0.25
SQSTM1-205ENST00000464493 CST5P28325 142 aaPredicted RBP16.6■□□□□ 0.25
SQSTM1-205ENST00000464493 NKX3-2P78367 333 aa16.6■□□□□ 0.25
SQSTM1-205ENST00000464493 IRX5P78411 483 aaPredicted RBP16.6■□□□□ 0.25
SQSTM1-205ENST00000464493 KCNA10Q16322 511 aa16.6■□□□□ 0.25
SQSTM1-205ENST00000464493 LY6KQ17RY6 165 aa16.6■□□□□ 0.25
SQSTM1-205ENST00000464493 GNPTABQ3T906 1256 aa16.6■□□□□ 0.25
SQSTM1-205ENST00000464493 GNASQ5JWF2 1037 aa16.6■□□□□ 0.25
SQSTM1-205ENST00000464493 GALNT17Q6IS24 598 aa16.6■□□□□ 0.25
SQSTM1-205ENST00000464493 PCSK9Q8NBP7 692 aaKnown RBP16.6■□□□□ 0.25
SQSTM1-205ENST00000464493 LLPHQ9BRT6 129 aaKnown RBP16.6■□□□□ 0.25
SQSTM1-205ENST00000464493 ALG1Q9BT22 464 aa16.6■□□□□ 0.25
SQSTM1-205ENST00000464493 ANO3Q9BYT9 981 aa16.6■□□□□ 0.25
SQSTM1-205ENST00000464493 SENP6Q9GZR1 1112 aaPredicted RBP16.6■□□□□ 0.25
SQSTM1-205ENST00000464493 TNRC18O15417 2968 aaPredicted RBP16.59■□□□□ 0.25
SQSTM1-205ENST00000464493 CD2BP2O95400 341 aaKnown RBP16.59■□□□□ 0.25
SQSTM1-205ENST00000464493 TGFB3P10600 412 aa16.59■□□□□ 0.25
SQSTM1-205ENST00000464493 BEX3Q00994 111 aa16.59■□□□□ 0.25
SQSTM1-205ENST00000464493 FSCN1Q16658 493 aaKnown RBP16.59■□□□□ 0.25
SQSTM1-205ENST00000464493 CCSAPQ6IQ19 270 aaPredicted RBP16.59■□□□□ 0.25
SQSTM1-205ENST00000464493 OR6J1Q8NGC5 347 aa16.59■□□□□ 0.25
SQSTM1-205ENST00000464493 COPS5Q92905 334 aa16.59■□□□□ 0.25
SQSTM1-205ENST00000464493 INPP4AQ96PE3 977 aaPredicted RBP16.59■□□□□ 0.25
SQSTM1-205ENST00000464493 HTATIP2Q9BUP3 242 aa16.59■□□□□ 0.25
SQSTM1-205ENST00000464493 PCDHA4Q9UN74 947 aa16.59■□□□□ 0.25
SQSTM1-205ENST00000464493 PHF24Q9UPV7 400 aa16.59■□□□□ 0.25
SQSTM1-205ENST00000464493 DNAH12Q6ZR08 3092 aa16.58■□□□□ 0.24
SQSTM1-205ENST00000464493 MOXD2PA6NHM9 499 aa16.58■□□□□ 0.24
SQSTM1-205ENST00000464493 SPATA31C2B4DYI2 1134 aa16.58■□□□□ 0.24
SQSTM1-205ENST00000464493 ZEB2O60315 1214 aa16.58■□□□□ 0.24
SQSTM1-205ENST00000464493 GH1P01241 217 aa16.58■□□□□ 0.24
SQSTM1-205ENST00000464493 ICAM3P32942 547 aa16.58■□□□□ 0.24
SQSTM1-205ENST00000464493 SREBF1P36956 1147 aa16.58■□□□□ 0.24
SQSTM1-205ENST00000464493 ACLYP53396 1101 aa16.58■□□□□ 0.24
SQSTM1-205ENST00000464493 NLRX1Q86UT6 975 aa16.58■□□□□ 0.24
SQSTM1-205ENST00000464493 BLIDQ8IZY5 108 aa16.58■□□□□ 0.24
SQSTM1-205ENST00000464493 RASGRP4Q8TDF6 673 aa16.58■□□□□ 0.24
SQSTM1-205ENST00000464493 FERMT2Q96AC1 680 aa16.58■□□□□ 0.24
SQSTM1-205ENST00000464493 TMX3Q96JJ7 454 aa16.58■□□□□ 0.24
SQSTM1-205ENST00000464493 PHF20Q9BVI0 1012 aa16.58■□□□□ 0.24
SQSTM1-205ENST00000464493 KCNJ14Q9UNX9 436 aa16.58■□□□□ 0.24
SQSTM1-205ENST00000464493 FIBPO43427 364 aa16.57■□□□□ 0.24
SQSTM1-205ENST00000464493 ASGR1P07306 291 aa16.57■□□□□ 0.24
SQSTM1-205ENST00000464493 CPT1AP50416 773 aa16.57■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms