RNA–Protein interactions for RNA: ENST00000399804.5

SCAF4-202, Transcript of SR-related CTD associated factor 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SCAF4, Length 4,127 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF4-202ENST00000399804 SLIT2O94813 1529 aa15.53■□□□□ 0.08
SCAF4-202ENST00000399804 ERLIN2O94905 339 aa15.53■□□□□ 0.08
SCAF4-202ENST00000399804 GNA14O95837 355 aa15.53■□□□□ 0.08
SCAF4-202ENST00000399804 FKBP3Q00688 224 aaKnown RBP15.53■□□□□ 0.08
SCAF4-202ENST00000399804 FAM151AQ8WW52 585 aa15.53■□□□□ 0.08
SCAF4-202ENST00000399804 JAKMIP2Q96AA8 810 aa15.53■□□□□ 0.08
SCAF4-202ENST00000399804 CENPHQ9H3R5 247 aa15.53■□□□□ 0.08
SCAF4-202ENST00000399804 PNMA2Q9UL42 364 aa15.53■□□□□ 0.08
SCAF4-202ENST00000399804 ZHX2Q9Y6X8 837 aa15.53■□□□□ 0.08
SCAF4-202ENST00000399804 ALS2Q96Q42 1657 aa15.52■□□□□ 0.08
SCAF4-202ENST00000399804 NOP56O00567 594 aaKnown RBP15.52■□□□□ 0.08
SCAF4-202ENST00000399804 POLD4Q9HCU8 107 aa15.52■□□□□ 0.08
SCAF4-202ENST00000399804 PHRF1Q9P1Y6 1649 aaKnown RBP15.52■□□□□ 0.08
SCAF4-202ENST00000399804 E9PMD0 336 aa15.52■□□□□ 0.07
SCAF4-202ENST00000399804 ERO1AQ96HE7 468 aa15.52■□□□□ 0.07
SCAF4-202ENST00000399804 BCL9LQ86UU0 1499 aa15.52■□□□□ 0.07
SCAF4-202ENST00000399804 AFDNP55196 1824 aaKnown RBP15.52■□□□□ 0.07
SCAF4-202ENST00000399804 PHLPP1O60346 1717 aa15.52■□□□□ 0.07
SCAF4-202ENST00000399804 CKAP4Q07065 602 aaKnown RBP15.52■□□□□ 0.07
SCAF4-202ENST00000399804 CTTNQ14247 550 aaKnown RBP15.52■□□□□ 0.07
SCAF4-202ENST00000399804 MAP9Q49MG5 647 aa15.52■□□□□ 0.07
SCAF4-202ENST00000399804 C15orf52Q6ZUT6 534 aaKnown RBP15.52■□□□□ 0.07
SCAF4-202ENST00000399804 SMCR8Q8TEV9 937 aaPredicted RBP15.52■□□□□ 0.07
SCAF4-202ENST00000399804 GOLGA1Q92805 767 aa15.52■□□□□ 0.07
SCAF4-202ENST00000399804 FUCA2Q9BTY2 467 aa15.52■□□□□ 0.07
SCAF4-202ENST00000399804 CCSER1Q9C0I3 900 aa15.52■□□□□ 0.07
SCAF4-202ENST00000399804 RAVER2Q9HCJ3 691 aaKnown RBP15.52■□□□□ 0.07
SCAF4-202ENST00000399804 NR2F2P24468 414 aa15.51■□□□□ 0.07
SCAF4-202ENST00000399804 KLHL30Q0D2K2 578 aa15.51■□□□□ 0.07
SCAF4-202ENST00000399804 EARS2Q5JPH6 523 aaKnown RBP15.51■□□□□ 0.07
SCAF4-202ENST00000399804 FAM102BQ5T8I3 360 aa15.51■□□□□ 0.07
SCAF4-202ENST00000399804 NCAPG2Q86XI2 1143 aa15.51■□□□□ 0.07
SCAF4-202ENST00000399804 RGS22Q8NE09 1264 aa15.51■□□□□ 0.07
SCAF4-202ENST00000399804 NAPGQ99747 312 aaPredicted RBP15.51■□□□□ 0.07
SCAF4-202ENST00000399804 TRPM3Q9HCF6 1732 aaPredicted RBP15.51■□□□□ 0.07
SCAF4-202ENST00000399804 POTEB3A0JP26 581 aa15.51■□□□□ 0.07
SCAF4-202ENST00000399804 POTECB2RU33 542 aa15.51■□□□□ 0.07
SCAF4-202ENST00000399804 POTEB2H3BUK9 544 aa15.51■□□□□ 0.07
SCAF4-202ENST00000399804 PRPHP41219 470 aa15.51■□□□□ 0.07
SCAF4-202ENST00000399804 POTEBQ6S5H4 581 aa15.51■□□□□ 0.07
SCAF4-202ENST00000399804 LSM14BQ9BX40 385 aaKnown RBP15.51■□□□□ 0.07
SCAF4-202ENST00000399804 EMILIN3Q9NT22 766 aa15.51■□□□□ 0.07
SCAF4-202ENST00000399804 CNOT7Q9UIV1 285 aaKnown RBP15.51■□□□□ 0.07
SCAF4-202ENST00000399804 RHBDL3P58872 404 aa15.51■□□□□ 0.07
SCAF4-202ENST00000399804 TCP11X2Q5H9J9 407 aa15.51■□□□□ 0.07
SCAF4-202ENST00000399804 MICALL2Q8IY33 904 aa15.51■□□□□ 0.07
SCAF4-202ENST00000399804 PIGOQ8TEQ8 1089 aa15.51■□□□□ 0.07
SCAF4-202ENST00000399804 RHOXF2BP0C7M4 288 aa15.5■□□□□ 0.07
SCAF4-202ENST00000399804 SMARCA1P28370 1054 aa15.5■□□□□ 0.07
SCAF4-202ENST00000399804 STAT3P40763 770 aa15.5■□□□□ 0.07
SCAF4-202ENST00000399804 PPP2R3AQ06190 1150 aa15.5■□□□□ 0.07
SCAF4-202ENST00000399804 FMR1Q06787 632 aaKnown RBP eCLIP15.5■□□□□ 0.078e-7■■■■■ 28.2
SCAF4-202ENST00000399804 ASIC2Q16515 512 aa15.5■□□□□ 0.07
SCAF4-202ENST00000399804 VWA3BQ502W6 1294 aa15.5■□□□□ 0.07
SCAF4-202ENST00000399804 APOBEC3HQ6NTF7 200 aaKnown RBP15.5■□□□□ 0.07
SCAF4-202ENST00000399804 RHOXF2Q9BQY4 288 aa15.5■□□□□ 0.07
SCAF4-202ENST00000399804 ARFGAP3Q9NP61 516 aa15.5■□□□□ 0.07
SCAF4-202ENST00000399804 EPN1Q9Y6I3 576 aaPredicted RBP15.5■□□□□ 0.07
SCAF4-202ENST00000399804 IVNS1ABPQ9Y6Y0 642 aa15.5■□□□□ 0.07
SCAF4-202ENST00000399804 ACTN4O43707 911 aaKnown RBP15.5■□□□□ 0.07
SCAF4-202ENST00000399804 BIRC3Q13489 604 aa15.5■□□□□ 0.07
SCAF4-202ENST00000399804 UNC13DQ70J99 1090 aa15.5■□□□□ 0.07
SCAF4-202ENST00000399804 OTUD6AQ7L8S5 288 aa15.5■□□□□ 0.07
SCAF4-202ENST00000399804 CERS5Q8N5B7 392 aa15.5■□□□□ 0.07
SCAF4-202ENST00000399804 PRPF38AQ8NAV1 312 aaKnown RBP15.5■□□□□ 0.07
SCAF4-202ENST00000399804 DPF2Q92785 391 aa15.5■□□□□ 0.07
SCAF4-202ENST00000399804 NACC1Q96RE7 527 aa15.5■□□□□ 0.07
SCAF4-202ENST00000399804 FNBP1Q96RU3 617 aa15.5■□□□□ 0.07
SCAF4-202ENST00000399804 FEM1BQ9UK73 627 aa15.5■□□□□ 0.07
SCAF4-202ENST00000399804 EXOC7Q9UPT5 735 aa15.5■□□□□ 0.07
SCAF4-202ENST00000399804 MCM3P25205 808 aa15.5■□□□□ 0.07
SCAF4-202ENST00000399804 ORC2Q13416 577 aaPredicted RBP15.5■□□□□ 0.07
SCAF4-202ENST00000399804 HLTFQ14527 1009 aaKnown RBP eCLIP15.5■□□□□ 0.07
SCAF4-202ENST00000399804 SFMBT2Q5VUG0 894 aa15.5■□□□□ 0.07
SCAF4-202ENST00000399804 PPP1R13BQ96KQ4 1090 aa15.5■□□□□ 0.07
SCAF4-202ENST00000399804 CCDC94Q9BW85 323 aaPredicted RBP15.5■□□□□ 0.07
SCAF4-202ENST00000399804 HPSEQ9Y251 543 aa15.5■□□□□ 0.07
SCAF4-202ENST00000399804 SCN11AQ9UI33 1791 aa15.5■□□□□ 0.07
SCAF4-202ENST00000399804 SFI1A8K8P3 1242 aa15.49■□□□□ 0.07
SCAF4-202ENST00000399804 K7ENM7 598 aa15.49■□□□□ 0.07
SCAF4-202ENST00000399804 IMPG2Q9BZV3 1241 aa15.49■□□□□ 0.07
SCAF4-202ENST00000399804 UTP3Q9NQZ2 479 aaKnown RBP eCLIP15.49■□□□□ 0.078e-7■■■■■ 56.9
SCAF4-202ENST00000399804 PRR12Q9ULL5 1215 aa15.49■□□□□ 0.07
SCAF4-202ENST00000399804 VEGFAP15692 232 aaPredicted RBP15.49■□□□□ 0.07
SCAF4-202ENST00000399804 USP11P51784 963 aa15.49■□□□□ 0.07
SCAF4-202ENST00000399804 GLG1Q92896 1179 aa15.49■□□□□ 0.07
SCAF4-202ENST00000399804 AZI2Q9H6S1 392 aa15.49■□□□□ 0.07
SCAF4-202ENST00000399804 TEX33O43247 280 aa15.49■□□□□ 0.07
SCAF4-202ENST00000399804 POLR2FP61218 127 aaKnown RBP15.49■□□□□ 0.07
SCAF4-202ENST00000399804 RBM43Q6ZSC3 357 aaKnown RBP15.49■□□□□ 0.07
SCAF4-202ENST00000399804 ZBTB9Q96C00 473 aa15.49■□□□□ 0.07
SCAF4-202ENST00000399804 FAM20AQ96MK3 541 aa15.49■□□□□ 0.07
SCAF4-202ENST00000399804 IFIH1Q9BYX4 1025 aaKnown RBP15.49■□□□□ 0.07
SCAF4-202ENST00000399804 POTEFA5A3E0 1075 aa15.49■□□□□ 0.07
SCAF4-202ENST00000399804 POLR3GO15318 223 aaPredicted RBP15.49■□□□□ 0.07
SCAF4-202ENST00000399804 POTEIP0CG38 1075 aa15.49■□□□□ 0.07
SCAF4-202ENST00000399804 BMS1Q14692 1282 aaKnown RBP15.49■□□□□ 0.07
SCAF4-202ENST00000399804 PRAMEF18Q5VWM3 479 aa15.49■□□□□ 0.07
SCAF4-202ENST00000399804 POTEGQ6S5H5 508 aa15.49■□□□□ 0.07
SCAF4-202ENST00000399804 POTEEQ6S8J3 1075 aa15.49■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 86.3 ms