RNA–Protein interactions for RNA: ENST00000299633.6

HDGFL3-201, Transcript of HDGF like 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HDGFL3, Length 12,733 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDGFL3-201ENST00000299633 SOX13Q9UN79 622 aa12.08□□□□□ -0.48
HDGFL3-201ENST00000299633 PKP1Q13835 747 aa12.08□□□□□ -0.48
HDGFL3-201ENST00000299633 RGS9BPQ6ZS82 235 aa12.08□□□□□ -0.48
HDGFL3-201ENST00000299633 XPO4Q9C0E2 1151 aaKnown RBP12.08□□□□□ -0.48
HDGFL3-201ENST00000299633 PHF8Q9UPP1 1060 aa12.08□□□□□ -0.48
HDGFL3-201ENST00000299633 PLS1Q14651 629 aa12.08□□□□□ -0.48
HDGFL3-201ENST00000299633 NUP62P37198 522 aaPredicted RBP12.08□□□□□ -0.48
HDGFL3-201ENST00000299633 KIF23Q02241 960 aaPredicted RBP12.08□□□□□ -0.48
HDGFL3-201ENST00000299633 FBXO38Q6PIJ6 1188 aa12.08□□□□□ -0.48
HDGFL3-201ENST00000299633 NLRP4Q96MN2 994 aa12.08□□□□□ -0.48
HDGFL3-201ENST00000299633 TRIM39Q9HCM9 518 aa12.08□□□□□ -0.48
HDGFL3-201ENST00000299633 TRIM33Q9UPN9 1127 aa12.08□□□□□ -0.48
HDGFL3-201ENST00000299633 ACEP12821 1306 aa12.08□□□□□ -0.48
HDGFL3-201ENST00000299633 LAMB3Q13751 1172 aa12.08□□□□□ -0.48
HDGFL3-201ENST00000299633 ANKRD2Q9GZV1 360 aa12.08□□□□□ -0.48
HDGFL3-201ENST00000299633 RXRAP19793 462 aa12.08□□□□□ -0.48
HDGFL3-201ENST00000299633 CCDC149Q6ZUS6 474 aa12.08□□□□□ -0.48
HDGFL3-201ENST00000299633 PDCD10Q9BUL8 212 aa12.08□□□□□ -0.48
HDGFL3-201ENST00000299633 TTC41PQ6P2S7 1318 aa12.08□□□□□ -0.48
HDGFL3-201ENST00000299633 TERF2Q15554 542 aa12.08□□□□□ -0.48
HDGFL3-201ENST00000299633 BEND3Q5T5X7 828 aa12.08□□□□□ -0.48
HDGFL3-201ENST00000299633 SPDYE2BA6NHP3 402 aa12.07□□□□□ -0.48
HDGFL3-201ENST00000299633 CTNND1O60716 968 aaKnown RBP12.07□□□□□ -0.48
HDGFL3-201ENST00000299633 SPDYE6P0CI01 402 aa12.07□□□□□ -0.48
HDGFL3-201ENST00000299633 BRAPQ7Z569 592 aa12.07□□□□□ -0.48
HDGFL3-201ENST00000299633 CRLF3Q8IUI8 442 aa12.07□□□□□ -0.48
HDGFL3-201ENST00000299633 TCF3P15923 654 aa12.07□□□□□ -0.48
HDGFL3-201ENST00000299633 PARP9Q8IXQ6 854 aa12.07□□□□□ -0.48
HDGFL3-201ENST00000299633 GYG2O15488 501 aa12.07□□□□□ -0.48
HDGFL3-201ENST00000299633 IFNB1P01574 187 aa12.07□□□□□ -0.48
HDGFL3-201ENST00000299633 NCF2P19878 526 aaPredicted RBP12.07□□□□□ -0.48
HDGFL3-201ENST00000299633 NR5A1Q13285 461 aa12.07□□□□□ -0.48
HDGFL3-201ENST00000299633 C14orf93Q9H972 538 aaKnown RBP12.07□□□□□ -0.48
HDGFL3-201ENST00000299633 EXOC7Q9UPT5 735 aa12.07□□□□□ -0.48
HDGFL3-201ENST00000299633 EIF4G3O43432 1585 aaKnown RBP12.07□□□□□ -0.48
HDGFL3-201ENST00000299633 KCNK3O14649 394 aa12.07□□□□□ -0.48
HDGFL3-201ENST00000299633 TRIM50Q86XT4 487 aa12.07□□□□□ -0.48
HDGFL3-201ENST00000299633 ESR2Q92731 530 aa12.07□□□□□ -0.48
HDGFL3-201ENST00000299633 EXOC4Q96A65 974 aa12.07□□□□□ -0.48
HDGFL3-201ENST00000299633 STOML1Q9UBI4 398 aa12.07□□□□□ -0.48
HDGFL3-201ENST00000299633 FAM173BQ6P4H8 233 aa12.07□□□□□ -0.48
HDGFL3-201ENST00000299633 VPS16Q9H269 839 aa12.07□□□□□ -0.48
HDGFL3-201ENST00000299633 KRR1Q13601 381 aaKnown RBP12.07□□□□□ -0.48
HDGFL3-201ENST00000299633 NARS2Q96I59 477 aaKnown RBP12.07□□□□□ -0.48
HDGFL3-201ENST00000299633 RPS6KC1Q96S38 1066 aa12.07□□□□□ -0.48
HDGFL3-201ENST00000299633 SNRPA1P09661 255 aaKnown RBP12.07□□□□□ -0.48
HDGFL3-201ENST00000299633 SRGAP2BP0DMP2 458 aa12.07□□□□□ -0.48
HDGFL3-201ENST00000299633 IDI1Q13907 227 aa12.07□□□□□ -0.48
HDGFL3-201ENST00000299633 RCSD1Q6JBY9 416 aa12.07□□□□□ -0.48
HDGFL3-201ENST00000299633 NCLNQ969V3 563 aa12.07□□□□□ -0.48
HDGFL3-201ENST00000299633 CSRNP1Q96S65 589 aa12.07□□□□□ -0.48
HDGFL3-201ENST00000299633 PARP3Q9Y6F1 533 aa12.07□□□□□ -0.48
HDGFL3-201ENST00000299633 ADAMTS12P58397 1594 aa12.07□□□□□ -0.48
HDGFL3-201ENST00000299633 CFLARO15519 480 aa12.07□□□□□ -0.48
HDGFL3-201ENST00000299633 DLGAP3O95886 979 aa12.07□□□□□ -0.48
HDGFL3-201ENST00000299633 ATL3Q6DD88 541 aa12.07□□□□□ -0.48
HDGFL3-201ENST00000299633 SMCR8Q8TEV9 937 aaPredicted RBP12.07□□□□□ -0.48
HDGFL3-201ENST00000299633 ASPSCR1Q9BZE9 553 aa12.07□□□□□ -0.48
HDGFL3-201ENST00000299633 SMARCAD1Q9H4L7 1026 aa12.07□□□□□ -0.48
HDGFL3-201ENST00000299633 CYP7A1P22680 504 aa12.07□□□□□ -0.48
HDGFL3-201ENST00000299633 ACRBPQ8NEB7 543 aa12.07□□□□□ -0.48
HDGFL3-201ENST00000299633 KRT87PA6NCN2 255 aa12.07□□□□□ -0.48
HDGFL3-201ENST00000299633 TOM1L1O75674 476 aa12.07□□□□□ -0.48
HDGFL3-201ENST00000299633 ELMSAN1Q6PJG2 1045 aa12.07□□□□□ -0.48
HDGFL3-201ENST00000299633 PNMA2Q9UL42 364 aa12.07□□□□□ -0.48
HDGFL3-201ENST00000299633 SBNO2Q9Y2G9 1366 aa12.07□□□□□ -0.48
HDGFL3-201ENST00000299633 TSTA3Q13630 321 aaPredicted RBP12.06□□□□□ -0.48
HDGFL3-201ENST00000299633 TYW1BQ6NUM6 668 aa12.06□□□□□ -0.48
HDGFL3-201ENST00000299633 VTI1AQ96AJ9 217 aa12.06□□□□□ -0.48
HDGFL3-201ENST00000299633 ENO4A6NNW6 628 aa12.06□□□□□ -0.48
HDGFL3-201ENST00000299633 XRCC5P13010 732 aaKnown RBP12.06□□□□□ -0.48
HDGFL3-201ENST00000299633 ATF7P17544 494 aaPredicted RBP12.06□□□□□ -0.48
HDGFL3-201ENST00000299633 ATP8B2P98198 1209 aa12.06□□□□□ -0.48
HDGFL3-201ENST00000299633 PAPOLBQ9NRJ5 636 aaKnown RBP12.06□□□□□ -0.48
HDGFL3-201ENST00000299633 TRPM2O94759 1503 aa12.06□□□□□ -0.48
HDGFL3-201ENST00000299633 GNA11P29992 359 aa12.06□□□□□ -0.48
HDGFL3-201ENST00000299633 ARHGEF18Q6ZSZ5 1173 aa12.06□□□□□ -0.48
HDGFL3-201ENST00000299633 NOP9Q86U38 636 aaKnown RBP12.06□□□□□ -0.48
HDGFL3-201ENST00000299633 MAPK8IP1Q9UQF2 711 aa12.06□□□□□ -0.48
HDGFL3-201ENST00000299633 PTPDC1A2A3K4 754 aa12.06□□□□□ -0.48
HDGFL3-201ENST00000299633 POC1B-GALNT4F8VUJ3 575 aa12.06□□□□□ -0.48
HDGFL3-201ENST00000299633 BIRC5O15392 142 aa12.06□□□□□ -0.48
HDGFL3-201ENST00000299633 CHMLP26374 656 aa12.06□□□□□ -0.48
HDGFL3-201ENST00000299633 IFNAR2P48551 515 aa12.06□□□□□ -0.48
HDGFL3-201ENST00000299633 MAGEB6Q8N7X4 407 aa12.06□□□□□ -0.48
HDGFL3-201ENST00000299633 ZNF219Q9P2Y4 722 aaPredicted RBP12.06□□□□□ -0.48
HDGFL3-201ENST00000299633 PNMA6AP0CW24 399 aaPredicted RBP12.06□□□□□ -0.48
HDGFL3-201ENST00000299633 FOXD4Q12950 439 aaPredicted RBP12.06□□□□□ -0.48
HDGFL3-201ENST00000299633 CAPN12Q6ZSI9 719 aa12.06□□□□□ -0.48
HDGFL3-201ENST00000299633 TSPYL6Q8N831 410 aa12.06□□□□□ -0.48
HDGFL3-201ENST00000299633 CABP5Q9NP86 173 aa12.06□□□□□ -0.48
HDGFL3-201ENST00000299633 POLR3AO14802 1390 aaPredicted RBP12.06□□□□□ -0.48
HDGFL3-201ENST00000299633 NPATQ14207 1427 aa12.06□□□□□ -0.48
HDGFL3-201ENST00000299633 ESRRAP11474 423 aaPredicted RBP12.06□□□□□ -0.48
HDGFL3-201ENST00000299633 PRPSAP1Q14558 356 aa12.06□□□□□ -0.48
HDGFL3-201ENST00000299633 FRMD4AQ9P2Q2 1039 aaPredicted RBP12.06□□□□□ -0.48
HDGFL3-201ENST00000299633 MYO1AQ9UBC5 1043 aa12.06□□□□□ -0.48
HDGFL3-201ENST00000299633 TRIM25Q14258 630 aaKnown RBP12.06□□□□□ -0.48
HDGFL3-201ENST00000299633 ZBTB40Q9NUA8 1239 aa12.06□□□□□ -0.48
HDGFL3-201ENST00000299633 KDM2BQ8NHM5 1336 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms