RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 WDR19Q8NEZ3 1342 aa16.87■□□□□ 0.29
SHH-201ENST00000297261 MOCS3O95396 460 aa16.86■□□□□ 0.29
SHH-201ENST00000297261 POLR2FP61218 127 aaKnown RBP16.86■□□□□ 0.29
SHH-201ENST00000297261 AP1ARQ63HQ0 302 aa16.86■□□□□ 0.29
SHH-201ENST00000297261 LSM14BQ9BX40 385 aaKnown RBP16.86■□□□□ 0.29
SHH-201ENST00000297261 POLD4Q9HCU8 107 aa16.86■□□□□ 0.29
SHH-201ENST00000297261 CTTNBP2NLQ9P2B4 639 aa16.86■□□□□ 0.29
SHH-201ENST00000297261 KLRF2D3W0D1 207 aa16.86■□□□□ 0.29
SHH-201ENST00000297261 ANTXR2P58335 489 aa16.86■□□□□ 0.29
SHH-201ENST00000297261 INF2Q27J81 1249 aa16.86■□□□□ 0.29
SHH-201ENST00000297261 DDX12PQ92771 950 aa16.86■□□□□ 0.29
SHH-201ENST00000297261 TMEM51Q9NW97 253 aa16.86■□□□□ 0.29
SHH-201ENST00000297261 CHUKO15111 745 aa16.86■□□□□ 0.29
SHH-201ENST00000297261 FAM13AO94988 1023 aa16.86■□□□□ 0.29
SHH-201ENST00000297261 FUCA2Q9BTY2 467 aa16.86■□□□□ 0.29
SHH-201ENST00000297261 NFU1Q9UMS0 254 aa16.86■□□□□ 0.29
SHH-201ENST00000297261 USP17L3A6NCW0 530 aa16.86■□□□□ 0.29
SHH-201ENST00000297261 USP17L4A6NCW7 530 aa16.86■□□□□ 0.29
SHH-201ENST00000297261 CTNND1O60716 968 aaKnown RBP16.86■□□□□ 0.29
SHH-201ENST00000297261 ABCC6O95255 1503 aa16.86■□□□□ 0.29
SHH-201ENST00000297261 ATP5DP30049 168 aa16.86■□□□□ 0.29
SHH-201ENST00000297261 NONOQ15233 471 aaKnown RBP eCLIP16.86■□□□□ 0.29
SHH-201ENST00000297261 USP17L1Q7RTZ2 530 aa16.86■□□□□ 0.29
SHH-201ENST00000297261 BPIFA3Q9BQP9 254 aa16.86■□□□□ 0.29
SHH-201ENST00000297261 FHOD1Q9Y613 1164 aa16.86■□□□□ 0.29
SHH-201ENST00000297261 RGPD5Q99666 1765 aa16.85■□□□□ 0.29
SHH-201ENST00000297261 RNF10Q8N5U6 811 aaKnown RBP16.85■□□□□ 0.29
SHH-201ENST00000297261 MASTLQ96GX5 879 aa16.85■□□□□ 0.29
SHH-201ENST00000297261 FOXP1Q9H334 677 aaPredicted RBP16.85■□□□□ 0.29
SHH-201ENST00000297261 SLC24A3Q9HC58 644 aa16.85■□□□□ 0.29
SHH-201ENST00000297261 FRMPD2Q68DX3 1309 aaPredicted RBP16.85■□□□□ 0.29
SHH-201ENST00000297261 NMT2O60551 498 aa16.85■□□□□ 0.29
SHH-201ENST00000297261 FTCDO95954 541 aa16.85■□□□□ 0.29
SHH-201ENST00000297261 STX2P32856 288 aa16.85■□□□□ 0.29
SHH-201ENST00000297261 MCUR1Q96AQ8 359 aa16.85■□□□□ 0.29
SHH-201ENST00000297261 LZTS2Q9BRK4 669 aa16.85■□□□□ 0.29
SHH-201ENST00000297261 COA1Q9GZY4 146 aa16.85■□□□□ 0.29
SHH-201ENST00000297261 GUCY2CP25092 1073 aa16.85■□□□□ 0.29
SHH-201ENST00000297261 SLC1A4P43007 532 aa16.85■□□□□ 0.29
SHH-201ENST00000297261 UAP1Q16222 522 aaPredicted RBP16.85■□□□□ 0.29
SHH-201ENST00000297261 FBXW10Q5XX13 1052 aa16.85■□□□□ 0.29
SHH-201ENST00000297261 FBXO33Q7Z6M2 555 aa16.85■□□□□ 0.29
SHH-201ENST00000297261 CCDC197Q8NCU1 140 aa16.85■□□□□ 0.29
SHH-201ENST00000297261 NCAPGQ9BPX3 1015 aa16.85■□□□□ 0.29
SHH-201ENST00000297261 RAB17Q9H0T7 212 aa16.85■□□□□ 0.29
SHH-201ENST00000297261 CD2APQ9Y5K6 639 aa16.85■□□□□ 0.29
SHH-201ENST00000297261 SLC10A5Q5PT55 438 aa16.84■□□□□ 0.29
SHH-201ENST00000297261 PLEKHA8P1O95397 391 aa16.84■□□□□ 0.29
SHH-201ENST00000297261 EPB41P11171 864 aaKnown RBP16.84■□□□□ 0.29
SHH-201ENST00000297261 ENAHQ8N8S7 591 aaPredicted RBP16.84■□□□□ 0.29
SHH-201ENST00000297261 U2AF1L4Q8WU68 220 aaKnown RBP16.84■□□□□ 0.29
SHH-201ENST00000297261 NHEJ1Q9H9Q4 299 aaPredicted RBP16.84■□□□□ 0.29
SHH-201ENST00000297261 HOMER3Q9NSC5 361 aa16.84■□□□□ 0.29
SHH-201ENST00000297261 N4BP1O75113 896 aaKnown RBP16.84■□□□□ 0.29
SHH-201ENST00000297261 SLC44A5Q8NCS7 719 aa16.84■□□□□ 0.29
SHH-201ENST00000297261 MMP1P03956 469 aa16.84■□□□□ 0.29
SHH-201ENST00000297261 H2AFXP16104 143 aaPredicted RBP16.84■□□□□ 0.29
SHH-201ENST00000297261 TECP42680 631 aa16.84■□□□□ 0.29
SHH-201ENST00000297261 VGLL2Q8N8G2 317 aa16.84■□□□□ 0.29
SHH-201ENST00000297261 L2HGDHQ9H9P8 463 aa16.84■□□□□ 0.29
SHH-201ENST00000297261 SPATS2LQ9NUQ6 558 aaKnown RBP16.84■□□□□ 0.29
SHH-201ENST00000297261 INTS9Q9NV88 658 aaKnown RBP16.84■□□□□ 0.29
SHH-201ENST00000297261 SESN3P58005 492 aa16.83■□□□□ 0.29
SHH-201ENST00000297261 RESP18Q5W5W9 173 aa16.83■□□□□ 0.29
SHH-201ENST00000297261 BLIDQ8IZY5 108 aa16.83■□□□□ 0.29
SHH-201ENST00000297261 KLHL14Q9P2G3 628 aa16.83■□□□□ 0.29
SHH-201ENST00000297261 AMFRQ9UKV5 643 aa16.83■□□□□ 0.29
SHH-201ENST00000297261 PARP4Q9UKK3 1724 aaKnown RBP16.83■□□□□ 0.28
SHH-201ENST00000297261 TBC1D8O95759 1140 aa16.83■□□□□ 0.28
SHH-201ENST00000297261 ZNF365Q70YC5 407 aa16.83■□□□□ 0.28
SHH-201ENST00000297261 NUCKS1Q9H1E3 243 aaKnown RBP16.83■□□□□ 0.28
SHH-201ENST00000297261 NOVA2Q9UNW9 492 aaKnown RBP16.83■□□□□ 0.28
SHH-201ENST00000297261 VPS41P49754 854 aa16.83■□□□□ 0.28
SHH-201ENST00000297261 FAM133BQ5BKY9 247 aaKnown RBP16.83■□□□□ 0.28
SHH-201ENST00000297261 PAGE5Q96GU1 130 aa16.83■□□□□ 0.28
SHH-201ENST00000297261 VCXQ9H320 206 aa16.83■□□□□ 0.28
SHH-201ENST00000297261 SENP2Q9HC62 589 aa16.83■□□□□ 0.28
SHH-201ENST00000297261 PLCB1Q9NQ66 1216 aa16.83■□□□□ 0.28
SHH-201ENST00000297261 ABHD10Q9NUJ1 306 aa16.83■□□□□ 0.28
SHH-201ENST00000297261 ATP8A1Q9Y2Q0 1164 aa16.83■□□□□ 0.28
SHH-201ENST00000297261 SRPRBQ9Y5M8 271 aaKnown RBP16.83■□□□□ 0.28
SHH-201ENST00000297261 EEF1GP26641 437 aaKnown RBP16.82■□□□□ 0.28
SHH-201ENST00000297261 EIF4A3P38919 411 aaKnown RBP16.82■□□□□ 0.28
SHH-201ENST00000297261 DLGAP5Q15398 846 aa16.82■□□□□ 0.28
SHH-201ENST00000297261 ALS2CLQ60I27 953 aa16.82■□□□□ 0.28
SHH-201ENST00000297261 CROCCP2Q86T23 111 aa16.82■□□□□ 0.28
SHH-201ENST00000297261 SGMS1Q86VZ5 419 aa16.82■□□□□ 0.28
SHH-201ENST00000297261 VPS52Q8N1B4 723 aa16.82■□□□□ 0.28
SHH-201ENST00000297261 MRPL44Q9H9J2 332 aaKnown RBP16.82■□□□□ 0.28
SHH-201ENST00000297261 UBL4BQ8N7F7 174 aa16.82■□□□□ 0.28
SHH-201ENST00000297261 COG1Q8WTW3 980 aa16.82■□□□□ 0.28
SHH-201ENST00000297261 GDAQ9Y2T3 454 aa16.82■□□□□ 0.28
SHH-201ENST00000297261 ESYT3A0FGR9 886 aa16.82■□□□□ 0.28
SHH-201ENST00000297261 SMCO2A6NFE2 343 aa16.82■□□□□ 0.28
SHH-201ENST00000297261 GYS1P13807 737 aa16.82■□□□□ 0.28
SHH-201ENST00000297261 KRT15P19012 456 aa16.82■□□□□ 0.28
SHH-201ENST00000297261 MRPL12P52815 198 aaKnown RBP16.82■□□□□ 0.28
SHH-201ENST00000297261 ZKSCAN8Q15776 578 aaPredicted RBP16.82■□□□□ 0.28
SHH-201ENST00000297261 ZYXQ15942 572 aaKnown RBP16.82■□□□□ 0.28
SHH-201ENST00000297261 EMBQ6PCB8 327 aa16.82■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 75.1 ms