RNA–Protein interactions for RNA: ENST00000274030.10

USP53-201, Transcript of ubiquitin specific peptidase 53, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP53, Length 5,936 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-201ENST00000274030 HAUS1Q96CS2 278 aa12.49□□□□□ -0.41
USP53-201ENST00000274030 KMT5AQ9NQR1 393 aa12.49□□□□□ -0.41
USP53-201ENST00000274030 GJB4Q9NTQ9 266 aa12.49□□□□□ -0.41
USP53-201ENST00000274030 NXF1Q9UBU9 619 aaKnown RBP12.49□□□□□ -0.41
USP53-201ENST00000274030 MAN1B1Q9UKM7 699 aa12.49□□□□□ -0.41
USP53-201ENST00000274030 MAGI2Q86UL8 1455 aa12.49□□□□□ -0.41
USP53-201ENST00000274030 YEATS2Q9ULM3 1422 aa12.49□□□□□ -0.41
USP53-201ENST00000274030 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.49□□□□□ -0.41
USP53-201ENST00000274030 SNAP23O00161 211 aa12.49□□□□□ -0.41
USP53-201ENST00000274030 HOXA13P31271 388 aaPredicted RBP12.49□□□□□ -0.41
USP53-201ENST00000274030 MFAP3P55082 362 aa12.49□□□□□ -0.41
USP53-201ENST00000274030 TFAMQ00059 246 aaKnown RBP12.49□□□□□ -0.41
USP53-201ENST00000274030 TRIM68Q6AZZ1 485 aa12.49□□□□□ -0.41
USP53-201ENST00000274030 RPS6KC1Q96S38 1066 aa12.49□□□□□ -0.41
USP53-201ENST00000274030 A6NJR5 290 aa12.49□□□□□ -0.41
USP53-201ENST00000274030 GFPT2O94808 682 aa12.49□□□□□ -0.41
USP53-201ENST00000274030 FTCDO95954 541 aa12.49□□□□□ -0.41
USP53-201ENST00000274030 NKX1-1Q15270 411 aaPredicted RBP12.49□□□□□ -0.41
USP53-201ENST00000274030 ZBTB33Q86T24 672 aa12.49□□□□□ -0.41
USP53-201ENST00000274030 LINC00301Q8NCQ3 95 aa12.49□□□□□ -0.41
USP53-201ENST00000274030 FAM135BQ49AJ0 1406 aa12.49□□□□□ -0.41
USP53-201ENST00000274030 TLR3O15455 904 aaKnown RBP12.49□□□□□ -0.41
USP53-201ENST00000274030 SLC4A1P02730 911 aa12.49□□□□□ -0.41
USP53-201ENST00000274030 RFC1P35251 1148 aaPredicted RBP12.49□□□□□ -0.41
USP53-201ENST00000274030 PSMC2P35998 433 aaKnown RBP12.49□□□□□ -0.41
USP53-201ENST00000274030 VCXQ9H320 206 aa12.49□□□□□ -0.41
USP53-201ENST00000274030 POLR3EQ9NVU0 708 aa12.49□□□□□ -0.41
USP53-201ENST00000274030 MMP1P03956 469 aa12.49□□□□□ -0.41
USP53-201ENST00000274030 LIG3P49916 1009 aa12.49□□□□□ -0.41
USP53-201ENST00000274030 CEP120Q8N960 986 aa12.49□□□□□ -0.41
USP53-201ENST00000274030 CACTINQ8WUQ7 758 aaKnown RBP12.49□□□□□ -0.41
USP53-201ENST00000274030 PIH1D3Q9NQM4 214 aaKnown RBP12.49□□□□□ -0.41
USP53-201ENST00000274030 FNDC3AQ9Y2H6 1198 aaKnown RBP12.49□□□□□ -0.41
USP53-201ENST00000274030 ADGRL2O95490 1459 aa12.49□□□□□ -0.41
USP53-201ENST00000274030 CFAP43Q8NDM7 1665 aa12.48□□□□□ -0.41
USP53-201ENST00000274030 PCP11498 1178 aaKnown RBP12.48□□□□□ -0.41
USP53-201ENST00000274030 BMP3P12645 472 aa12.48□□□□□ -0.41
USP53-201ENST00000274030 RSRC2Q7L4I2 434 aaKnown RBP12.48□□□□□ -0.41
USP53-201ENST00000274030 ZNF526Q8TF50 670 aaPredicted RBP12.48□□□□□ -0.41
USP53-201ENST00000274030 AFPP02771 609 aaKnown RBP12.48□□□□□ -0.41
USP53-201ENST00000274030 MTERF2Q49AM1 385 aa12.48□□□□□ -0.41
USP53-201ENST00000274030 CYP4F22Q6NT55 531 aa12.48□□□□□ -0.41
USP53-201ENST00000274030 ATP6V0A1Q93050 837 aa12.48□□□□□ -0.41
USP53-201ENST00000274030 GPR108Q9NPR9 543 aa12.48□□□□□ -0.41
USP53-201ENST00000274030 FRMD4AQ9P2Q2 1039 aaPredicted RBP12.48□□□□□ -0.41
USP53-201ENST00000274030 SOWAHDA6NJG2 315 aa12.48□□□□□ -0.41
USP53-201ENST00000274030 GOLGA8KD6RF30 607 aa12.48□□□□□ -0.41
USP53-201ENST00000274030 MAPK4P31152 587 aa12.48□□□□□ -0.41
USP53-201ENST00000274030 EPB41L5Q9HCM4 733 aa12.48□□□□□ -0.41
USP53-201ENST00000274030 SPTLC3Q9NUV7 552 aa12.48□□□□□ -0.41
USP53-201ENST00000274030 PASKQ96RG2 1323 aa12.48□□□□□ -0.41
USP53-201ENST00000274030 SH2B2O14492 632 aaPredicted RBP12.48□□□□□ -0.41
USP53-201ENST00000274030 ZNF500O60304 480 aaPredicted RBP12.48□□□□□ -0.41
USP53-201ENST00000274030 SASH1O94885 1247 aa12.48□□□□□ -0.41
USP53-201ENST00000274030 CACNB3P54284 484 aa12.48□□□□□ -0.41
USP53-201ENST00000274030 PLCB4Q15147 1175 aa12.48□□□□□ -0.41
USP53-201ENST00000274030 PI4K2BQ8TCG2 481 aa12.48□□□□□ -0.41
USP53-201ENST00000274030 CCDC68Q9H2F9 335 aa12.48□□□□□ -0.41
USP53-201ENST00000274030 KANSL2Q9H9L4 492 aa12.48□□□□□ -0.41
USP53-201ENST00000274030 ZNF277Q9NRM2 450 aaPredicted RBP12.48□□□□□ -0.41
USP53-201ENST00000274030 IGSF1Q8N6C5 1336 aa12.48□□□□□ -0.41
USP53-201ENST00000274030 CLTAP09496 248 aa12.47□□□□□ -0.41
USP53-201ENST00000274030 CD58P19256 250 aa12.47□□□□□ -0.41
USP53-201ENST00000274030 DDIT3P35638 169 aa12.47□□□□□ -0.41
USP53-201ENST00000274030 RASSF2P50749 326 aa12.47□□□□□ -0.41
USP53-201ENST00000274030 PLTPP55058 493 aa12.47□□□□□ -0.41
USP53-201ENST00000274030 PDE1BQ01064 536 aa12.47□□□□□ -0.41
USP53-201ENST00000274030 RASGRF1Q13972 1273 aa12.47□□□□□ -0.41
USP53-201ENST00000274030 CC2D2BQ6DHV5 1058 aa12.47□□□□□ -0.41
USP53-201ENST00000274030 SIRT2Q8IXJ6 389 aa12.47□□□□□ -0.41
USP53-201ENST00000274030 CCNYQ8ND76 341 aa12.47□□□□□ -0.41
USP53-201ENST00000274030 OSBPL3Q9H4L5 887 aa12.47□□□□□ -0.41
USP53-201ENST00000274030 CDC23Q9UJX2 597 aa12.47□□□□□ -0.41
USP53-201ENST00000274030 ECE1P42892 770 aa12.47□□□□□ -0.41
USP53-201ENST00000274030 MECOMQ03112 1051 aa12.47□□□□□ -0.41
USP53-201ENST00000274030 PDZD4Q76G19 769 aaPredicted RBP12.47□□□□□ -0.41
USP53-201ENST00000274030 TDRD7Q8NHU6 1098 aaKnown RBP12.47□□□□□ -0.41
USP53-201ENST00000274030 TYW1Q9NV66 732 aaKnown RBP12.47□□□□□ -0.41
USP53-201ENST00000274030 BZW2Q9Y6E2 419 aaKnown RBP12.47□□□□□ -0.41
USP53-201ENST00000274030 SFI1A8K8P3 1242 aa12.47□□□□□ -0.41
USP53-201ENST00000274030 MOCS3O95396 460 aa12.47□□□□□ -0.41
USP53-201ENST00000274030 CYP27A1Q02318 531 aa12.47□□□□□ -0.41
USP53-201ENST00000274030 C2orf54Q08AI8 447 aa12.47□□□□□ -0.41
USP53-201ENST00000274030 KIF22Q14807 665 aa12.47□□□□□ -0.41
USP53-201ENST00000274030 PPP2R5EQ16537 467 aa12.47□□□□□ -0.41
USP53-201ENST00000274030 GBP7Q8N8V2 638 aaPredicted RBP12.47□□□□□ -0.41
USP53-201ENST00000274030 UBE2TQ9NPD8 197 aaPredicted RBP12.47□□□□□ -0.41
USP53-201ENST00000274030 SLFN14P0C7P3 912 aa12.47□□□□□ -0.41
USP53-201ENST00000274030 LMNB1P20700 586 aa12.47□□□□□ -0.41
USP53-201ENST00000274030 TRAPPC10P48553 1259 aa12.47□□□□□ -0.41
USP53-201ENST00000274030 STAT2P52630 851 aa12.47□□□□□ -0.41
USP53-201ENST00000274030 ZKSCAN8Q15776 578 aaPredicted RBP12.47□□□□□ -0.41
USP53-201ENST00000274030 MUM1Q2TAK8 710 aa12.47□□□□□ -0.41
USP53-201ENST00000274030 RINT1Q6NUQ1 792 aa12.47□□□□□ -0.41
USP53-201ENST00000274030 CFAP61Q8NHU2 1237 aa12.47□□□□□ -0.41
USP53-201ENST00000274030 ATP8A1Q9Y2Q0 1164 aa12.47□□□□□ -0.41
USP53-201ENST00000274030 GOLGA8IPA6NC78 632 aa12.47□□□□□ -0.41
USP53-201ENST00000274030 GOLGA8JA6NMD2 632 aa12.47□□□□□ -0.41
USP53-201ENST00000274030 PLCG1P19174 1290 aa12.47□□□□□ -0.41
USP53-201ENST00000274030 FKBP3Q00688 224 aaKnown RBP12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms