RNA–Protein interactions for RNA: ENST00000224237.9

VIM-201, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIM, Length 1,868 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-201ENST00000224237 FAM20AQ96MK3 541 aa20.41■□□□□ 0.86
VIM-201ENST00000224237 ADAMTS5Q9UNA0 930 aa20.41■□□□□ 0.86
VIM-201ENST00000224237 AP5Z1O43299 807 aa20.41■□□□□ 0.86
VIM-201ENST00000224237 CASP1P29466 404 aa20.41■□□□□ 0.86
VIM-201ENST00000224237 PPATQ06203 517 aa20.41■□□□□ 0.86
VIM-201ENST00000224237 SNX29Q8TEQ0 813 aa20.41■□□□□ 0.86
VIM-201ENST00000224237 PLIN2Q99541 437 aa20.41■□□□□ 0.86
VIM-201ENST00000224237 RRAGCQ9HB90 399 aa20.41■□□□□ 0.86
VIM-201ENST00000224237 STK17AQ9UEE5 414 aa20.41■□□□□ 0.86
VIM-201ENST00000224237 TPM4P67936 248 aa20.4■□□□□ 0.86
VIM-201ENST00000224237 CUL4BQ13620 913 aa20.4■□□□□ 0.86
VIM-201ENST00000224237 REPS2Q8NFH8 660 aa20.4■□□□□ 0.86
VIM-201ENST00000224237 BLZF1Q9H2G9 400 aa20.4■□□□□ 0.86
VIM-201ENST00000224237 RMND1Q9NWS8 449 aa20.4■□□□□ 0.86
VIM-201ENST00000224237 COL11A1P12107 1806 aaPredicted RBP20.4■□□□□ 0.86
VIM-201ENST00000224237 KDM3AQ9Y4C1 1321 aa20.4■□□□□ 0.86
VIM-201ENST00000224237 SLC26A4O43511 780 aa20.39■□□□□ 0.86
VIM-201ENST00000224237 GRB10Q13322 594 aa20.39■□□□□ 0.86
VIM-201ENST00000224237 CT47A1Q5JQC4 288 aaPredicted RBP20.39■□□□□ 0.86
VIM-201ENST00000224237 SARM1Q6SZW1 724 aa20.39■□□□□ 0.86
VIM-201ENST00000224237 ERO1BQ86YB8 467 aa20.39■□□□□ 0.86
VIM-201ENST00000224237 GJA10Q969M2 543 aa20.39■□□□□ 0.86
VIM-201ENST00000224237 ZNF408Q9H9D4 720 aa20.39■□□□□ 0.86
VIM-201ENST00000224237 HOMER2Q9NSB8 354 aa20.39■□□□□ 0.86
VIM-201ENST00000224237 HOXC10Q9NYD6 342 aa20.39■□□□□ 0.86
VIM-201ENST00000224237 IGLV3-22A0A075B6J6 115 aa20.39■□□□□ 0.85
VIM-201ENST00000224237 IRF6O14896 467 aa20.39■□□□□ 0.85
VIM-201ENST00000224237 ATP2A1O14983 1001 aa20.39■□□□□ 0.85
VIM-201ENST00000224237 MYL5Q02045 173 aa20.39■□□□□ 0.85
VIM-201ENST00000224237 MUM1L1Q5H9M0 696 aa20.39■□□□□ 0.85
VIM-201ENST00000224237 LRRC15Q8TF66 581 aa20.39■□□□□ 0.85
VIM-201ENST00000224237 TRERF1Q96PN7 1200 aa20.39■□□□□ 0.85
VIM-201ENST00000224237 UIMC1Q96RL1 719 aa20.39■□□□□ 0.85
VIM-201ENST00000224237 LOC285556D6RIA3 1793 aa20.38■□□□□ 0.85
VIM-201ENST00000224237 AMPD3Q01432 767 aa20.38■□□□□ 0.85
VIM-201ENST00000224237 SEMA3FQ13275 785 aa20.38■□□□□ 0.85
VIM-201ENST00000224237 NCAPHQ15003 741 aa20.38■□□□□ 0.85
VIM-201ENST00000224237 TREML2Q5T2D2 321 aa20.38■□□□□ 0.85
VIM-201ENST00000224237 ARMC9Q7Z3E5 817 aa20.38■□□□□ 0.85
VIM-201ENST00000224237 NT5C3AQ9H0P0 336 aa20.38■□□□□ 0.85
VIM-201ENST00000224237 ZNF214Q9UL59 606 aaPredicted RBP20.38■□□□□ 0.85
VIM-201ENST00000224237 RPTORQ8N122 1335 aa20.38■□□□□ 0.85
VIM-201ENST00000224237 SPDYE5A6NIY4 337 aa20.37■□□□□ 0.85
VIM-201ENST00000224237 MSH4O15457 936 aa20.37■□□□□ 0.85
VIM-201ENST00000224237 RPN1P04843 607 aaKnown RBP20.37■□□□□ 0.85
VIM-201ENST00000224237 SETQ01105 290 aaPredicted RBP20.37■□□□□ 0.85
VIM-201ENST00000224237 TMEM119Q4V9L6 283 aa20.37■□□□□ 0.85
VIM-201ENST00000224237 CEP55Q53EZ4 464 aa20.37■□□□□ 0.85
VIM-201ENST00000224237 HAUS3Q68CZ6 603 aa20.37■□□□□ 0.85
VIM-201ENST00000224237 PNMA5Q96PV4 448 aa20.37■□□□□ 0.85
VIM-201ENST00000224237 TRIM5Q9C035 493 aa20.37■□□□□ 0.85
VIM-201ENST00000224237 STK24Q9Y6E0 443 aa20.37■□□□□ 0.85
VIM-201ENST00000224237 A0A0G2JLL6 359 aaPredicted RBP20.37■□□□□ 0.85
VIM-201ENST00000224237 SPDYE16A6NNV3 312 aaPredicted RBP20.37■□□□□ 0.85
VIM-201ENST00000224237 SPIRE1Q08AE8 756 aa20.37■□□□□ 0.85
VIM-201ENST00000224237 HS1BP3Q53T59 392 aa20.37■□□□□ 0.85
VIM-201ENST00000224237 HYIQ5T013 277 aa20.37■□□□□ 0.85
VIM-201ENST00000224237 SNRNP48Q6IEG0 339 aaKnown RBP20.37■□□□□ 0.85
VIM-201ENST00000224237 PRRT2Q7Z6L0 340 aaPredicted RBP20.37■□□□□ 0.85
VIM-201ENST00000224237 PROCA1Q8NCQ7 364 aaPredicted RBP20.37■□□□□ 0.85
VIM-201ENST00000224237 CYP2W1Q8TAV3 490 aa20.37■□□□□ 0.85
VIM-201ENST00000224237 LARP4BQ92615 738 aaKnown RBP20.37■□□□□ 0.85
VIM-201ENST00000224237 RTN4Q9NQC3 1192 aaKnown RBP20.37■□□□□ 0.85
VIM-201ENST00000224237 RNF146Q9NTX7 359 aa20.37■□□□□ 0.85
VIM-201ENST00000224237 COL20A1Q9P218 1284 aa20.37■□□□□ 0.85
VIM-201ENST00000224237 CXCL11O14625 94 aa20.36■□□□□ 0.85
VIM-201ENST00000224237 RPS6P62753 249 aaKnown RBP20.36■□□□□ 0.85
VIM-201ENST00000224237 UBXN2AP68543 259 aa20.36■□□□□ 0.85
VIM-201ENST00000224237 PLA2G4DQ86XP0 818 aa20.36■□□□□ 0.85
VIM-201ENST00000224237 ERMNQ8TAM6 284 aa20.36■□□□□ 0.85
VIM-201ENST00000224237 SYTL5Q8TDW5 730 aaPredicted RBP20.36■□□□□ 0.85
VIM-201ENST00000224237 ZNF526Q8TF50 670 aaPredicted RBP20.36■□□□□ 0.85
VIM-201ENST00000224237 NUDT12Q9BQG2 462 aa20.36■□□□□ 0.85
VIM-201ENST00000224237 TEX13BQ9BXU2 312 aa20.36■□□□□ 0.85
VIM-201ENST00000224237 FRMPD4Q14CM0 1322 aa20.36■□□□□ 0.85
VIM-201ENST00000224237 ERCC5P28715 1186 aaPredicted RBP20.35■□□□□ 0.85
VIM-201ENST00000224237 CCT6AP40227 531 aaKnown RBP20.35■□□□□ 0.85
VIM-201ENST00000224237 KCNB1Q14721 858 aa20.35■□□□□ 0.85
VIM-201ENST00000224237 TMEM132BQ14DG7 1078 aa20.35■□□□□ 0.85
VIM-201ENST00000224237 TKFCQ3LXA3 575 aa20.35■□□□□ 0.85
VIM-201ENST00000224237 RNF207Q6ZRF8 634 aa20.35■□□□□ 0.85
VIM-201ENST00000224237 SV2BQ7L1I2 683 aa20.35■□□□□ 0.85
VIM-201ENST00000224237 C7orf25Q9BPX7 421 aa20.35■□□□□ 0.85
VIM-201ENST00000224237 TRIM9Q9C026 710 aa20.35■□□□□ 0.85
VIM-201ENST00000224237 NMRK2Q9NPI5 230 aa20.35■□□□□ 0.85
VIM-201ENST00000224237 BLOC1S4Q9NUP1 217 aa20.35■□□□□ 0.85
VIM-201ENST00000224237 RIPK3Q9Y572 518 aa20.35■□□□□ 0.85
VIM-201ENST00000224237 ZNF75DP51815 510 aa20.35■□□□□ 0.85
VIM-201ENST00000224237 PPIL2Q13356 520 aa20.35■□□□□ 0.85
VIM-201ENST00000224237 ZNF658Q5TYW1 1059 aaPredicted RBP20.35■□□□□ 0.85
VIM-201ENST00000224237 GADL1Q6ZQY3 521 aa20.35■□□□□ 0.85
VIM-201ENST00000224237 RAD54LQ92698 747 aa20.35■□□□□ 0.85
VIM-201ENST00000224237 OPTNQ96CV9 577 aa20.35■□□□□ 0.85
VIM-201ENST00000224237 MAF1Q9H063 256 aa20.35■□□□□ 0.85
VIM-201ENST00000224237 HOXA7P31268 230 aaPredicted RBP20.34■□□□□ 0.85
VIM-201ENST00000224237 ARHGAP30Q7Z6I6 1101 aaPredicted RBP20.34■□□□□ 0.85
VIM-201ENST00000224237 ENOX1Q8TC92 643 aaKnown RBP20.34■□□□□ 0.85
VIM-201ENST00000224237 LRRC27Q9C0I9 530 aa20.34■□□□□ 0.85
VIM-201ENST00000224237 VAV3Q9UKW4 847 aa20.34■□□□□ 0.85
VIM-201ENST00000224237 KCNH4Q9UQ05 1017 aa20.34■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms