RNA–Protein interactions for RNA: ENST00000600733.5

SHKBP1-225, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5 BASIC

Gene SHKBP1, Length 2,284 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-225ENST00000600733 CLEC10AQ8IUN9 316 aa22.54■■□□□ 1.2
SHKBP1-225ENST00000600733 ESYT2A0FGR8 921 aa22.53■■□□□ 1.2
SHKBP1-225ENST00000600733 ZNF185O15231 689 aa22.53■■□□□ 1.2
SHKBP1-225ENST00000600733 PLCG2P16885 1265 aa22.53■■□□□ 1.2
SHKBP1-225ENST00000600733 ERCC3P19447 782 aa22.53■■□□□ 1.2
SHKBP1-225ENST00000600733 FAM196AQ6ZSG2 479 aa22.53■■□□□ 1.2
SHKBP1-225ENST00000600733 GPIHBP1Q8IV16 184 aa22.53■■□□□ 1.2
SHKBP1-225ENST00000600733 FAM207AQ9NSI2 230 aaPredicted RBP22.53■■□□□ 1.2
SHKBP1-225ENST00000600733 GGA1Q9UJY5 639 aa22.53■■□□□ 1.2
SHKBP1-225ENST00000600733 A0A1W2PQJ5 194 aa22.52■■□□□ 1.2
SHKBP1-225ENST00000600733 LMAN1P49257 510 aa22.52■■□□□ 1.2
SHKBP1-225ENST00000600733 COBLL1Q53SF7 1204 aa22.52■■□□□ 1.2
SHKBP1-225ENST00000600733 FIGNQ5HY92 759 aa22.52■■□□□ 1.2
SHKBP1-225ENST00000600733 LARP4BQ92615 738 aaKnown RBP22.52■■□□□ 1.2
SHKBP1-225ENST00000600733 EXOC4Q96A65 974 aa22.52■■□□□ 1.2
SHKBP1-225ENST00000600733 NUDT12Q9BQG2 462 aa22.52■■□□□ 1.2
SHKBP1-225ENST00000600733 TUBBP07437 444 aa22.52■■□□□ 1.2
SHKBP1-225ENST00000600733 NOVP48745 357 aa22.52■■□□□ 1.2
SHKBP1-225ENST00000600733 UNC13DQ70J99 1090 aa22.52■■□□□ 1.2
SHKBP1-225ENST00000600733 MSL3Q8N5Y2 521 aaKnown RBP22.52■■□□□ 1.2
SHKBP1-225ENST00000600733 CDK5RAP3Q96JB5 506 aa22.52■■□□□ 1.2
SHKBP1-225ENST00000600733 CCDC42Q96M95 316 aa22.52■■□□□ 1.2
SHKBP1-225ENST00000600733 FXR2P51116 673 aaKnown RBP eCLIP22.51■■□□□ 1.19
SHKBP1-225ENST00000600733 ADCY7P51828 1080 aa22.51■■□□□ 1.19
SHKBP1-225ENST00000600733 PICALMQ13492 652 aa22.51■■□□□ 1.19
SHKBP1-225ENST00000600733 VWA3BQ502W6 1294 aa22.51■■□□□ 1.19
SHKBP1-225ENST00000600733 SMCR8Q8TEV9 937 aaPredicted RBP22.51■■□□□ 1.19
SHKBP1-225ENST00000600733 PURBQ96QR8 312 aaKnown RBP22.51■■□□□ 1.19
SHKBP1-225ENST00000600733 NDST4Q9H3R1 872 aa22.51■■□□□ 1.19
SHKBP1-225ENST00000600733 SIK3Q9Y2K2 1263 aa22.51■■□□□ 1.19
SHKBP1-225ENST00000600733 FAN1Q9Y2M0 1017 aa22.51■■□□□ 1.19
SHKBP1-225ENST00000600733 PDE2AO00408 941 aaPredicted RBP22.51■■□□□ 1.19
SHKBP1-225ENST00000600733 IDEP14735 1019 aa22.51■■□□□ 1.19
SHKBP1-225ENST00000600733 VAV2P52735 878 aa22.51■■□□□ 1.19
SHKBP1-225ENST00000600733 KIF5AQ12840 1032 aa22.51■■□□□ 1.19
SHKBP1-225ENST00000600733 ORC2Q13416 577 aaPredicted RBP22.51■■□□□ 1.19
SHKBP1-225ENST00000600733 KCNK18Q7Z418 384 aa22.51■■□□□ 1.19
SHKBP1-225ENST00000600733 C2CD5Q86YS7 1000 aa22.51■■□□□ 1.19
SHKBP1-225ENST00000600733 GLIS3Q8NEA6 775 aa22.51■■□□□ 1.19
SHKBP1-225ENST00000600733 CCDC102AQ96A19 550 aa22.51■■□□□ 1.19
SHKBP1-225ENST00000600733 MTMR4Q9NYA4 1195 aa22.51■■□□□ 1.19
SHKBP1-225ENST00000600733 STK17AQ9UEE5 414 aa22.51■■□□□ 1.19
SHKBP1-225ENST00000600733 ATP2B4P23634 1241 aa22.5■■□□□ 1.19
SHKBP1-225ENST00000600733 CDK17Q00537 523 aa22.5■■□□□ 1.19
SHKBP1-225ENST00000600733 GPCPD1Q9NPB8 672 aa22.5■■□□□ 1.19
SHKBP1-225ENST00000600733 JADE2Q9NQC1 790 aa22.5■■□□□ 1.19
SHKBP1-225ENST00000600733 ARHGAP20Q9P2F6 1191 aa22.5■■□□□ 1.19
SHKBP1-225ENST00000600733 POLLQ9UGP5 575 aa22.5■■□□□ 1.19
SHKBP1-225ENST00000600733 PLAGL2Q9UPG8 496 aa22.5■■□□□ 1.19
SHKBP1-225ENST00000600733 GAKO14976 1311 aa22.5■■□□□ 1.19
SHKBP1-225ENST00000600733 PHACTR2O75167 634 aa22.5■■□□□ 1.19
SHKBP1-225ENST00000600733 ZMYND10O75800 440 aa22.5■■□□□ 1.19
SHKBP1-225ENST00000600733 SPA17Q15506 151 aa22.5■■□□□ 1.19
SHKBP1-225ENST00000600733 CCDC96Q2M329 555 aa22.5■■□□□ 1.19
SHKBP1-225ENST00000600733 TMEM266Q2M3C6 531 aa22.5■■□□□ 1.19
SHKBP1-225ENST00000600733 SNX29Q8TEQ0 813 aa22.5■■□□□ 1.19
SHKBP1-225ENST00000600733 SECISBP2LQ93073 1101 aaKnown RBP22.5■■□□□ 1.19
SHKBP1-225ENST00000600733 FAM163AQ96GL9 167 aaPredicted RBP22.5■■□□□ 1.19
SHKBP1-225ENST00000600733 NHSQ6T4R5 1651 aa22.49■■□□□ 1.19
SHKBP1-225ENST00000600733 AKR1B1P15121 316 aa22.49■■□□□ 1.19
SHKBP1-225ENST00000600733 TNNI2P48788 182 aa22.49■■□□□ 1.19
SHKBP1-225ENST00000600733 LRRC41Q15345 812 aa22.49■■□□□ 1.19
SHKBP1-225ENST00000600733 CAGE1Q8TC20 777 aa22.49■■□□□ 1.19
SHKBP1-225ENST00000600733 GJA10Q969M2 543 aa22.49■■□□□ 1.19
SHKBP1-225ENST00000600733 MMRN2Q9H8L6 949 aa22.49■■□□□ 1.19
SHKBP1-225ENST00000600733 PVALEFA0A1B0GWK0 134 aa22.48■■□□□ 1.19
SHKBP1-225ENST00000600733 ATP2B2Q01814 1243 aa22.48■■□□□ 1.19
SHKBP1-225ENST00000600733 UBE2SQ16763 222 aa22.48■■□□□ 1.19
SHKBP1-225ENST00000600733 RAD54LQ92698 747 aa22.48■■□□□ 1.19
SHKBP1-225ENST00000600733 PSD3Q9NYI0 1048 aa22.48■■□□□ 1.19
SHKBP1-225ENST00000600733 DAGLAQ9Y4D2 1042 aa22.48■■□□□ 1.19
SHKBP1-225ENST00000600733 ANO9A1A5B4 782 aa22.48■■□□□ 1.19
SHKBP1-225ENST00000600733 CKAP4Q07065 602 aaKnown RBP22.48■■□□□ 1.19
SHKBP1-225ENST00000600733 CRY2Q49AN0 593 aa22.48■■□□□ 1.19
SHKBP1-225ENST00000600733 DPP8Q6V1X1 898 aaPredicted RBP22.48■■□□□ 1.19
SHKBP1-225ENST00000600733 GUF1Q8N442 669 aaKnown RBP22.48■■□□□ 1.19
SHKBP1-225ENST00000600733 DDX12PQ92771 950 aa22.48■■□□□ 1.19
SHKBP1-225ENST00000600733 IFIH1Q9BYX4 1025 aaKnown RBP22.48■■□□□ 1.19
SHKBP1-225ENST00000600733 CAPN6Q9Y6Q1 641 aa22.48■■□□□ 1.19
SHKBP1-225ENST00000600733 HNRNPH3P31942 346 aaKnown RBP22.47■■□□□ 1.19
SHKBP1-225ENST00000600733 ECM1Q16610 540 aa22.47■■□□□ 1.19
SHKBP1-225ENST00000600733 MAN2A1Q16706 1144 aa22.47■■□□□ 1.19
SHKBP1-225ENST00000600733 ASPRV1Q53RT3 343 aa22.47■■□□□ 1.19
SHKBP1-225ENST00000600733 MLXIPQ9HAP2 919 aa22.47■■□□□ 1.19
SHKBP1-225ENST00000600733 MYH10P35580 1976 aa22.47■■□□□ 1.19
SHKBP1-225ENST00000600733 hCG_1984214I3L0E3 225 aa22.47■■□□□ 1.19
SHKBP1-225ENST00000600733 EIF4A3P38919 411 aaKnown RBP22.47■■□□□ 1.19
SHKBP1-225ENST00000600733 KIF11P52732 1056 aa22.47■■□□□ 1.19
SHKBP1-225ENST00000600733 ZSCAN26Q16670 478 aa22.47■■□□□ 1.19
SHKBP1-225ENST00000600733 KRT79Q5XKE5 535 aa22.47■■□□□ 1.19
SHKBP1-225ENST00000600733 SLF2Q8IX21 1173 aa22.47■■□□□ 1.19
SHKBP1-225ENST00000600733 ZNF713Q8N859 430 aaPredicted RBP22.47■■□□□ 1.19
SHKBP1-225ENST00000600733 TBC1D16Q8TBP0 767 aa22.47■■□□□ 1.19
SHKBP1-225ENST00000600733 DRC1Q96MC2 740 aa22.47■■□□□ 1.19
SHKBP1-225ENST00000600733 GDAP1L1Q96MZ0 367 aa22.47■■□□□ 1.19
SHKBP1-225ENST00000600733 PCDHA13Q9Y5I0 950 aa22.47■■□□□ 1.19
SHKBP1-225ENST00000600733 PPP1R11O60927 126 aaPredicted RBP22.46■■□□□ 1.19
SHKBP1-225ENST00000600733 TNNT3P45378 269 aaPredicted RBP22.46■■□□□ 1.19
SHKBP1-225ENST00000600733 C2orf54Q08AI8 447 aa22.46■■□□□ 1.19
SHKBP1-225ENST00000600733 HSP90B2PQ58FF3 399 aa22.46■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms