RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 DIS3LQ8TF46 1054 aaKnown RBP14.96□□□□□ -0.01
CLK3-224ENST00000568605 SCFD2Q8WU76 684 aa14.96□□□□□ -0.01
CLK3-224ENST00000568605 CCDC12Q8WUD4 166 aaPredicted RBP14.96□□□□□ -0.01
CLK3-224ENST00000568605 GLT8D2Q9H1C3 349 aa14.96□□□□□ -0.01
CLK3-224ENST00000568605 PXMP2Q9NR77 195 aa14.96□□□□□ -0.01
CLK3-224ENST00000568605 COL20A1Q9P218 1284 aa14.96□□□□□ -0.01
CLK3-224ENST00000568605 GTF3C3Q9Y5Q9 886 aa14.96□□□□□ -0.01
CLK3-224ENST00000568605 PIK3CDO00329 1044 aa14.95□□□□□ -0.02
CLK3-224ENST00000568605 EIF2AK2P19525 551 aaKnown RBP14.95□□□□□ -0.02
CLK3-224ENST00000568605 PDIA3P30101 505 aaKnown RBP14.95□□□□□ -0.02
CLK3-224ENST00000568605 HOXA13P31271 388 aaPredicted RBP14.95□□□□□ -0.02
CLK3-224ENST00000568605 ADCYAP1R1P41586 468 aa14.95□□□□□ -0.02
CLK3-224ENST00000568605 NAPAP54920 295 aa14.95□□□□□ -0.02
CLK3-224ENST00000568605 IQSEC1Q6DN90 963 aa14.95□□□□□ -0.02
CLK3-224ENST00000568605 TLK2Q86UE8 772 aa14.95□□□□□ -0.02
CLK3-224ENST00000568605 PCSK9Q8NBP7 692 aaKnown RBP14.95□□□□□ -0.02
CLK3-224ENST00000568605 TBC1D5Q92609 795 aa14.95□□□□□ -0.02
CLK3-224ENST00000568605 TAAR1Q96RJ0 339 aa14.95□□□□□ -0.02
CLK3-224ENST00000568605 RNF26Q9BY78 433 aaPredicted RBP14.95□□□□□ -0.02
CLK3-224ENST00000568605 ALDH8A1Q9H2A2 487 aaPredicted RBP14.95□□□□□ -0.02
CLK3-224ENST00000568605 EHMT1Q9H9B1 1298 aa14.95□□□□□ -0.02
CLK3-224ENST00000568605 CEP290O15078 2479 aa14.95□□□□□ -0.02
CLK3-224ENST00000568605 SCN10AQ9Y5Y9 1956 aa14.94□□□□□ -0.02
CLK3-224ENST00000568605 hCG_1642624A0A1W2PR95 340 aa14.94□□□□□ -0.02
CLK3-224ENST00000568605 SPDYE3A6NKU9 549 aa14.94□□□□□ -0.02
CLK3-224ENST00000568605 NKRFO15226 690 aaKnown RBP eCLIP14.94□□□□□ -0.02
CLK3-224ENST00000568605 ADAMTS4O75173 837 aa14.94□□□□□ -0.02
CLK3-224ENST00000568605 CDKL5O76039 1030 aa14.94□□□□□ -0.02
CLK3-224ENST00000568605 SEC24BO95487 1268 aa14.94□□□□□ -0.02
CLK3-224ENST00000568605 C6orf222P0C671 652 aaPredicted RBP14.94□□□□□ -0.02
CLK3-224ENST00000568605 SCG2P13521 617 aa14.94□□□□□ -0.02
CLK3-224ENST00000568605 CST5P28325 142 aaPredicted RBP14.94□□□□□ -0.02
CLK3-224ENST00000568605 CCND2P30279 289 aa14.94□□□□□ -0.02
CLK3-224ENST00000568605 ADD1P35611 737 aaKnown RBP14.94□□□□□ -0.02
CLK3-224ENST00000568605 CCT2P78371 535 aaKnown RBP14.94□□□□□ -0.02
CLK3-224ENST00000568605 TTLL4Q14679 1199 aa14.94□□□□□ -0.02
CLK3-224ENST00000568605 LRRC41Q15345 812 aa14.94□□□□□ -0.02
CLK3-224ENST00000568605 GJC2Q5T442 439 aaPredicted RBP14.94□□□□□ -0.02
CLK3-224ENST00000568605 WWC2Q6AWC2 1192 aa14.94□□□□□ -0.02
CLK3-224ENST00000568605 FCHSD1Q86WN1 690 aa14.94□□□□□ -0.02
CLK3-224ENST00000568605 CCDC148Q8NFR7 591 aa14.94□□□□□ -0.02
CLK3-224ENST00000568605 GPKOWQ92917 476 aaPredicted RBP eCLIP14.94□□□□□ -0.02
CLK3-224ENST00000568605 LENG1Q96BZ8 264 aaPredicted RBP14.94□□□□□ -0.02
CLK3-224ENST00000568605 PDCD2LQ9BRP1 358 aa14.94□□□□□ -0.02
CLK3-224ENST00000568605 AP5M1Q9H0R1 490 aa14.94□□□□□ -0.02
CLK3-224ENST00000568605 PSTPIP2Q9H939 334 aa14.94□□□□□ -0.02
CLK3-224ENST00000568605 FAM217BQ9NTX9 383 aaPredicted RBP14.94□□□□□ -0.02
CLK3-224ENST00000568605 Q9Y3F1 56 aa14.94□□□□□ -0.02
CLK3-224ENST00000568605 V9GY48 417 aaPredicted RBP14.94□□□□□ -0.02
CLK3-224ENST00000568605 MYH9P35579 1960 aaKnown RBP14.94□□□□□ -0.02
CLK3-224ENST00000568605 FRMPD4Q14CM0 1322 aa14.93□□□□□ -0.02
CLK3-224ENST00000568605 MOXD2PA6NHM9 499 aa14.93□□□□□ -0.02
CLK3-224ENST00000568605 STAM2O75886 525 aa14.93□□□□□ -0.02
CLK3-224ENST00000568605 PGK1P00558 417 aa14.93□□□□□ -0.02
CLK3-224ENST00000568605 NR3C2P08235 984 aa14.93□□□□□ -0.02
CLK3-224ENST00000568605 COL6A1P12109 1028 aa14.93□□□□□ -0.02
CLK3-224ENST00000568605 IFNAR1P17181 557 aa14.93□□□□□ -0.02
CLK3-224ENST00000568605 MNX1P50219 401 aaPredicted RBP14.93□□□□□ -0.02
CLK3-224ENST00000568605 ADCY7P51828 1080 aa14.93□□□□□ -0.02
CLK3-224ENST00000568605 GJA9P57773 515 aa14.93□□□□□ -0.02
CLK3-224ENST00000568605 FUT2Q10981 343 aa14.93□□□□□ -0.02
CLK3-224ENST00000568605 PGM5Q15124 567 aa14.93□□□□□ -0.02
CLK3-224ENST00000568605 PFKFB3Q16875 520 aaPredicted RBP14.93□□□□□ -0.02
CLK3-224ENST00000568605 DUSP28Q4G0W2 176 aa14.93□□□□□ -0.02
CLK3-224ENST00000568605 BRDTQ58F21 947 aaPredicted RBP14.93□□□□□ -0.02
CLK3-224ENST00000568605 TAPT1Q6NXT6 567 aa14.93□□□□□ -0.02
CLK3-224ENST00000568605 DPF3Q92784 378 aa14.93□□□□□ -0.02
CLK3-224ENST00000568605 TSEN34Q9BSV6 310 aaKnown RBP14.93□□□□□ -0.02
CLK3-224ENST00000568605 UPF3AQ9H1J1 476 aaKnown RBP14.93□□□□□ -0.02
CLK3-224ENST00000568605 SLKQ9H2G2 1235 aaPredicted RBP14.93□□□□□ -0.02
CLK3-224ENST00000568605 BARHL2Q9NY43 387 aa14.93□□□□□ -0.02
CLK3-224ENST00000568605 RBM47A0AV96 593 aaKnown RBP14.92□□□□□ -0.02
CLK3-224ENST00000568605 ADCY6O43306 1168 aa14.92□□□□□ -0.02
CLK3-224ENST00000568605 PRPF3O43395 683 aaKnown RBP14.92□□□□□ -0.02
CLK3-224ENST00000568605 ZEB2O60315 1214 aa14.92□□□□□ -0.02
CLK3-224ENST00000568605 EIF3JO75822 258 aaKnown RBP14.92□□□□□ -0.02
CLK3-224ENST00000568605 MYCLP12524 364 aaPredicted RBP14.92□□□□□ -0.02
CLK3-224ENST00000568605 NEK4P51957 841 aa14.92□□□□□ -0.02
CLK3-224ENST00000568605 AK2P54819 239 aa14.92□□□□□ -0.02
CLK3-224ENST00000568605 STK3Q13188 491 aa14.92□□□□□ -0.02
CLK3-224ENST00000568605 GNPTABQ3T906 1256 aa14.92□□□□□ -0.02
CLK3-224ENST00000568605 KCNV1Q6PIU1 500 aa14.92□□□□□ -0.02
CLK3-224ENST00000568605 SLC26A6Q9BXS9 759 aa14.92□□□□□ -0.02
CLK3-224ENST00000568605 C22orf23Q9BZE7 217 aa14.92□□□□□ -0.02
CLK3-224ENST00000568605 WDR11Q9BZH6 1224 aa14.92□□□□□ -0.02
CLK3-224ENST00000568605 SENP6Q9GZR1 1112 aaPredicted RBP14.92□□□□□ -0.02
CLK3-224ENST00000568605 PHF24Q9UPV7 400 aa14.92□□□□□ -0.02
CLK3-224ENST00000568605 NR2E3Q9Y5X4 410 aa14.92□□□□□ -0.02
CLK3-224ENST00000568605 DDX49Q9Y6V7 483 aaKnown RBP14.92□□□□□ -0.02
CLK3-224ENST00000568605 MKI67P46013 3256 aaKnown RBP14.92□□□□□ -0.02
CLK3-224ENST00000568605 TANC1Q9C0D5 1861 aa14.91□□□□□ -0.02
CLK3-224ENST00000568605 C11orf97A0A1B0GVM6 126 aaPredicted RBP14.91□□□□□ -0.02
CLK3-224ENST00000568605 ESYT2A0FGR8 921 aa14.91□□□□□ -0.02
CLK3-224ENST00000568605 STXBP3O00186 592 aa14.91□□□□□ -0.02
CLK3-224ENST00000568605 EVI5O60447 810 aa14.91□□□□□ -0.02
CLK3-224ENST00000568605 SMPD1P17405 629 aa14.91□□□□□ -0.02
CLK3-224ENST00000568605 CPT1AP50416 773 aa14.91□□□□□ -0.02
CLK3-224ENST00000568605 SSRP1Q08945 709 aaKnown RBP14.91□□□□□ -0.02
CLK3-224ENST00000568605 NTRK3Q16288 839 aa14.91□□□□□ -0.02
CLK3-224ENST00000568605 MCTP2Q6DN12 878 aa14.91□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms