RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 TXKP42681 527 aa18.96■□□□□ 0.63
LDLR-206ENST00000557958 MOXD1Q6UVY6 613 aa18.96■□□□□ 0.63
LDLR-206ENST00000557958 CCDC186Q7Z3E2 898 aa18.96■□□□□ 0.63
LDLR-206ENST00000557958 CCDC47Q96A33 483 aaKnown RBP18.96■□□□□ 0.63
LDLR-206ENST00000557958 ANO3Q9BYT9 981 aa18.96■□□□□ 0.63
LDLR-206ENST00000557958 IMPACTQ9P2X3 320 aa18.96■□□□□ 0.63
LDLR-206ENST00000557958 LRWD1Q9UFC0 647 aa18.96■□□□□ 0.63
LDLR-206ENST00000557958 SCN4AP35499 1836 aa18.96■□□□□ 0.62
LDLR-206ENST00000557958 SPDYE3A6NKU9 549 aa18.95■□□□□ 0.62
LDLR-206ENST00000557958 TDP2O95551 362 aa18.95■□□□□ 0.62
LDLR-206ENST00000557958 SERPINC1P01008 464 aa18.95■□□□□ 0.62
LDLR-206ENST00000557958 GSDMDP57764 484 aa18.95■□□□□ 0.62
LDLR-206ENST00000557958 AMPD3Q01432 767 aa18.95■□□□□ 0.62
LDLR-206ENST00000557958 VGLL4Q14135 290 aa18.95■□□□□ 0.62
LDLR-206ENST00000557958 IFNKQ9P0W0 207 aa18.95■□□□□ 0.62
LDLR-206ENST00000557958 PP2D1A8MPX8 630 aa18.94■□□□□ 0.62
LDLR-206ENST00000557958 TPM2P07951 284 aa18.94■□□□□ 0.62
LDLR-206ENST00000557958 PTGS1P23219 599 aa18.94■□□□□ 0.62
LDLR-206ENST00000557958 FANCCQ00597 558 aa18.94■□□□□ 0.62
LDLR-206ENST00000557958 USH1GQ495M9 461 aa18.94■□□□□ 0.62
LDLR-206ENST00000557958 PPP1R3FQ6ZSY5 799 aaPredicted RBP18.94■□□□□ 0.62
LDLR-206ENST00000557958 ZNF280CQ8ND82 737 aa18.94■□□□□ 0.62
LDLR-206ENST00000557958 KIFC2Q96AC6 838 aa18.94■□□□□ 0.62
LDLR-206ENST00000557958 CDK5RAP3Q96JB5 506 aa18.94■□□□□ 0.62
LDLR-206ENST00000557958 FEM1BQ9UK73 627 aa18.94■□□□□ 0.62
LDLR-206ENST00000557958 WDR90Q96KV7 1748 aa18.94■□□□□ 0.62
LDLR-206ENST00000557958 USP17L15C9J2P7 530 aa18.94■□□□□ 0.62
LDLR-206ENST00000557958 USP17L13C9JLJ4 530 aa18.94■□□□□ 0.62
LDLR-206ENST00000557958 USP17L11C9JVI0 530 aa18.94■□□□□ 0.62
LDLR-206ENST00000557958 USP17L18D6R9N7 530 aa18.94■□□□□ 0.62
LDLR-206ENST00000557958 USP17L22D6RA61 530 aa18.94■□□□□ 0.62
LDLR-206ENST00000557958 USP17L17D6RBQ6 530 aa18.94■□□□□ 0.62
LDLR-206ENST00000557958 USP17L19D6RCP7 530 aa18.94■□□□□ 0.62
LDLR-206ENST00000557958 USP17L20D6RJB6 530 aa18.94■□□□□ 0.62
LDLR-206ENST00000557958 SLC37A4O43826 429 aa18.94■□□□□ 0.62
LDLR-206ENST00000557958 RPN1P04843 607 aaKnown RBP18.94■□□□□ 0.62
LDLR-206ENST00000557958 USP17L24Q0WX57 530 aa18.94■□□□□ 0.62
LDLR-206ENST00000557958 USP17L6PQ6QN14 398 aa18.94■□□□□ 0.62
LDLR-206ENST00000557958 XPO4Q9C0E2 1151 aaKnown RBP18.94■□□□□ 0.62
LDLR-206ENST00000557958 ELP3Q9H9T3 547 aa18.94■□□□□ 0.62
LDLR-206ENST00000557958 KBTBD4Q9NVX7 518 aa18.94■□□□□ 0.62
LDLR-206ENST00000557958 STK17AQ9UEE5 414 aa18.94■□□□□ 0.62
LDLR-206ENST00000557958 PLCG1P19174 1290 aa18.93■□□□□ 0.62
LDLR-206ENST00000557958 CUL4BQ13620 913 aa18.93■□□□□ 0.62
LDLR-206ENST00000557958 NAALADL2Q58DX5 795 aa18.93■□□□□ 0.62
LDLR-206ENST00000557958 KRT79Q5XKE5 535 aa18.93■□□□□ 0.62
LDLR-206ENST00000557958 LPAR1Q92633 364 aa18.93■□□□□ 0.62
LDLR-206ENST00000557958 ZNF830Q96NB3 372 aaPredicted RBP18.93■□□□□ 0.62
LDLR-206ENST00000557958 BLZF1Q9H2G9 400 aa18.93■□□□□ 0.62
LDLR-206ENST00000557958 FANCLQ9NW38 375 aa18.93■□□□□ 0.62
LDLR-206ENST00000557958 NFE2L3Q9Y4A8 694 aa18.93■□□□□ 0.62
LDLR-206ENST00000557958 SYNRGQ9UMZ2 1314 aa18.93■□□□□ 0.62
LDLR-206ENST00000557958 CYP3A7-CYP3A51PA0A087WV96 503 aa18.92■□□□□ 0.62
LDLR-206ENST00000557958 MEIS2O14770 477 aa18.92■□□□□ 0.62
LDLR-206ENST00000557958 SLC26A4O43511 780 aa18.92■□□□□ 0.62
LDLR-206ENST00000557958 CDK11BP21127 795 aaKnown RBP18.92■□□□□ 0.62
LDLR-206ENST00000557958 CYP3A7P24462 503 aa18.92■□□□□ 0.62
LDLR-206ENST00000557958 UBASH3AP57075 661 aa18.92■□□□□ 0.62
LDLR-206ENST00000557958 KCNB1Q14721 858 aa18.92■□□□□ 0.62
LDLR-206ENST00000557958 ZNF658Q5TYW1 1059 aaPredicted RBP18.92■□□□□ 0.62
LDLR-206ENST00000557958 SLFN12Q8IYM2 578 aa18.92■□□□□ 0.62
LDLR-206ENST00000557958 CNKSR2Q8WXI2 1034 aa18.92■□□□□ 0.62
LDLR-206ENST00000557958 STAMQ92783 540 aa18.92■□□□□ 0.62
LDLR-206ENST00000557958 CLMNQ96JQ2 1002 aa18.92■□□□□ 0.62
LDLR-206ENST00000557958 TANGO6Q9C0B7 1094 aa18.92■□□□□ 0.62
LDLR-206ENST00000557958 KIAA1683Q9H0B3 1180 aa18.92■□□□□ 0.62
LDLR-206ENST00000557958 SNCAIPQ9Y6H5 919 aa18.92■□□□□ 0.62
LDLR-206ENST00000557958 ATAD5Q96QE3 1844 aa18.92■□□□□ 0.62
LDLR-206ENST00000557958 PIK3CDO00329 1044 aa18.92■□□□□ 0.62
LDLR-206ENST00000557958 USP14P54578 494 aa18.92■□□□□ 0.62
LDLR-206ENST00000557958 HMGCS2P54868 508 aa18.92■□□□□ 0.62
LDLR-206ENST00000557958 BACE1P56817 501 aa18.92■□□□□ 0.62
LDLR-206ENST00000557958 SPATA1Q5VX52 437 aa18.92■□□□□ 0.62
LDLR-206ENST00000557958 ARMC9Q7Z3E5 817 aa18.92■□□□□ 0.62
LDLR-206ENST00000557958 MTRQ99707 1265 aa18.92■□□□□ 0.62
LDLR-206ENST00000557958 LRRC27Q9C0I9 530 aa18.92■□□□□ 0.62
LDLR-206ENST00000557958 HSD3B7Q9H2F3 369 aa18.92■□□□□ 0.62
LDLR-206ENST00000557958 RANBP17Q9H2T7 1088 aaKnown RBP18.92■□□□□ 0.62
LDLR-206ENST00000557958 EMILIN3Q9NT22 766 aa18.92■□□□□ 0.62
LDLR-206ENST00000557958 FBXO28Q9NVF7 368 aa18.92■□□□□ 0.62
LDLR-206ENST00000557958 PRKCSHP14314 528 aaPredicted RBP18.91■□□□□ 0.62
LDLR-206ENST00000557958 CASP1P29466 404 aa18.91■□□□□ 0.62
LDLR-206ENST00000557958 ARHGAP4P98171 946 aa18.91■□□□□ 0.62
LDLR-206ENST00000557958 STIM1Q13586 685 aa18.91■□□□□ 0.62
LDLR-206ENST00000557958 NOL9Q5SY16 702 aaKnown RBP18.91■□□□□ 0.62
LDLR-206ENST00000557958 PDZRN4Q6ZMN7 1036 aaPredicted RBP18.91■□□□□ 0.62
LDLR-206ENST00000557958 LDHDQ86WU2 507 aa18.91■□□□□ 0.62
LDLR-206ENST00000557958 WDR18Q9BV38 432 aa18.91■□□□□ 0.62
LDLR-206ENST00000557958 EHMT1Q9H9B1 1298 aa18.91■□□□□ 0.62
LDLR-206ENST00000557958 PCDHA12Q9UN75 941 aa18.91■□□□□ 0.62
LDLR-206ENST00000557958 MRPL11Q9Y3B7 192 aaKnown RBP18.91■□□□□ 0.62
LDLR-206ENST00000557958 NRDCO43847 1150 aa18.9■□□□□ 0.62
LDLR-206ENST00000557958 OFD1O75665 1012 aa18.9■□□□□ 0.62
LDLR-206ENST00000557958 ATP1A3P13637 1013 aa18.9■□□□□ 0.62
LDLR-206ENST00000557958 SREBF1P36956 1147 aa18.9■□□□□ 0.62
LDLR-206ENST00000557958 TERF1P54274 439 aa18.9■□□□□ 0.62
LDLR-206ENST00000557958 CCDC174Q6PII3 467 aa18.9■□□□□ 0.62
LDLR-206ENST00000557958 ANKRD13AQ8IZ07 590 aa18.9■□□□□ 0.62
LDLR-206ENST00000557958 OTUD5Q96G74 571 aa18.9■□□□□ 0.62
LDLR-206ENST00000557958 KCNF1Q9H3M0 494 aa18.9■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms