RNA–Protein interactions for RNA: ENST00000548436.5

PRPF40B-208, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 2

Gene PRPF40B, Length 2,059 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-208ENST00000548436 TUBGCP2Q9BSJ2 902 aa20.73■□□□□ 0.91
PRPF40B-208ENST00000548436 SLC39A2Q9NP94 309 aa20.73■□□□□ 0.91
PRPF40B-208ENST00000548436 PI4KBQ9UBF8 816 aa20.73■□□□□ 0.91
PRPF40B-208ENST00000548436 DDX25Q9UHL0 483 aaKnown RBP20.73■□□□□ 0.91
PRPF40B-208ENST00000548436 DDX41Q9UJV9 622 aaKnown RBP20.73■□□□□ 0.91
PRPF40B-208ENST00000548436 ATF5Q9Y2D1 282 aaPredicted RBP20.73■□□□□ 0.91
PRPF40B-208ENST00000548436 B4DLN1 442 aa20.73■□□□□ 0.91
PRPF40B-208ENST00000548436 RAD21O60216 631 aa20.73■□□□□ 0.91
PRPF40B-208ENST00000548436 PRKCSHP14314 528 aaPredicted RBP20.73■□□□□ 0.91
PRPF40B-208ENST00000548436 H2AFXP16104 143 aaPredicted RBP20.73■□□□□ 0.91
PRPF40B-208ENST00000548436 ARHGAP29Q52LW3 1261 aa20.73■□□□□ 0.91
PRPF40B-208ENST00000548436 KCNK18Q7Z418 384 aa20.73■□□□□ 0.91
PRPF40B-208ENST00000548436 SIAH1Q8IUQ4 282 aa20.73■□□□□ 0.91
PRPF40B-208ENST00000548436 SNX29Q8TEQ0 813 aa20.73■□□□□ 0.91
PRPF40B-208ENST00000548436 CHP1Q99653 195 aa20.73■□□□□ 0.91
PRPF40B-208ENST00000548436 RAB34Q9BZG1 259 aa20.73■□□□□ 0.91
PRPF40B-208ENST00000548436 SEMA6BQ9H3T3 888 aa20.73■□□□□ 0.91
PRPF40B-208ENST00000548436 H0YIN7 160 aa20.72■□□□□ 0.91
PRPF40B-208ENST00000548436 ABL1P00519 1130 aa20.72■□□□□ 0.91
PRPF40B-208ENST00000548436 HDLBPQ00341 1268 aaKnown RBP20.72■□□□□ 0.91
PRPF40B-208ENST00000548436 ECM1Q16610 540 aa20.72■□□□□ 0.91
PRPF40B-208ENST00000548436 QRICH1Q2TAL8 776 aa20.72■□□□□ 0.91
PRPF40B-208ENST00000548436 STYK1Q6J9G0 422 aa20.72■□□□□ 0.91
PRPF40B-208ENST00000548436 UNC13DQ70J99 1090 aa20.72■□□□□ 0.91
PRPF40B-208ENST00000548436 DYMQ7RTS9 669 aa20.72■□□□□ 0.91
PRPF40B-208ENST00000548436 ZSCAN29Q8IWY8 852 aaPredicted RBP20.72■□□□□ 0.91
PRPF40B-208ENST00000548436 UBXN4Q92575 508 aa20.72■□□□□ 0.91
PRPF40B-208ENST00000548436 RAD54LQ92698 747 aa20.72■□□□□ 0.91
PRPF40B-208ENST00000548436 CNOT6LQ96LI5 555 aaKnown RBP20.72■□□□□ 0.91
PRPF40B-208ENST00000548436 NYAP2Q9P242 653 aa20.72■□□□□ 0.91
PRPF40B-208ENST00000548436 EFCAB8A8MWE9 144 aa20.71■□□□□ 0.91
PRPF40B-208ENST00000548436 NKRFO15226 690 aaKnown RBP eCLIP20.71■□□□□ 0.91
PRPF40B-208ENST00000548436 PPP1R2P41236 205 aa20.71■□□□□ 0.91
PRPF40B-208ENST00000548436 DNM2P50570 870 aa20.71■□□□□ 0.91
PRPF40B-208ENST00000548436 TMEM119Q4V9L6 283 aa20.71■□□□□ 0.91
PRPF40B-208ENST00000548436 KRT79Q5XKE5 535 aa20.71■□□□□ 0.91
PRPF40B-208ENST00000548436 GTPBP4Q9BZE4 634 aaKnown RBP20.71■□□□□ 0.91
PRPF40B-208ENST00000548436 KANSL2Q9H9L4 492 aa20.71■□□□□ 0.91
PRPF40B-208ENST00000548436 USP17L15C9J2P7 530 aa20.71■□□□□ 0.91
PRPF40B-208ENST00000548436 USP17L13C9JLJ4 530 aa20.71■□□□□ 0.91
PRPF40B-208ENST00000548436 USP17L11C9JVI0 530 aa20.71■□□□□ 0.91
PRPF40B-208ENST00000548436 USP17L18D6R9N7 530 aa20.71■□□□□ 0.91
PRPF40B-208ENST00000548436 USP17L22D6RA61 530 aa20.71■□□□□ 0.91
PRPF40B-208ENST00000548436 USP17L17D6RBQ6 530 aa20.71■□□□□ 0.91
PRPF40B-208ENST00000548436 USP17L19D6RCP7 530 aa20.71■□□□□ 0.91
PRPF40B-208ENST00000548436 USP17L20D6RJB6 530 aa20.71■□□□□ 0.91
PRPF40B-208ENST00000548436 CHRNA5P30532 468 aa20.71■□□□□ 0.91
PRPF40B-208ENST00000548436 SLC1A4P43007 532 aa20.71■□□□□ 0.91
PRPF40B-208ENST00000548436 USP17L24Q0WX57 530 aa20.71■□□□□ 0.91
PRPF40B-208ENST00000548436 SEPT2Q15019 361 aa20.71■□□□□ 0.91
PRPF40B-208ENST00000548436 SLFN13Q68D06 897 aa20.71■□□□□ 0.91
PRPF40B-208ENST00000548436 TATDN1Q6P1N9 297 aa20.71■□□□□ 0.91
PRPF40B-208ENST00000548436 USP17L6PQ6QN14 398 aa20.71■□□□□ 0.91
PRPF40B-208ENST00000548436 OGFRQ9NZT2 677 aa20.71■□□□□ 0.91
PRPF40B-208ENST00000548436 CAPN11Q9UMQ6 739 aa20.71■□□□□ 0.91
PRPF40B-208ENST00000548436 PVALEFA0A1B0GWK0 134 aa20.7■□□□□ 0.9
PRPF40B-208ENST00000548436 KIF5CO60282 957 aa20.7■□□□□ 0.9
PRPF40B-208ENST00000548436 CENPPQ6IPU0 288 aa20.7■□□□□ 0.9
PRPF40B-208ENST00000548436 OR8K1Q8NGG5 319 aa20.7■□□□□ 0.9
PRPF40B-208ENST00000548436 DCAF4Q8WV16 495 aa20.7■□□□□ 0.9
PRPF40B-208ENST00000548436 DNAJC7Q99615 494 aa20.7■□□□□ 0.9
PRPF40B-208ENST00000548436 LUC7L2Q9Y383 392 aaKnown RBP20.7■□□□□ 0.9
PRPF40B-208ENST00000548436 RASSF10A6NK89 507 aa20.69■□□□□ 0.9
PRPF40B-208ENST00000548436 PPP2R3AQ06190 1150 aa20.69■□□□□ 0.9
PRPF40B-208ENST00000548436 AOC3Q16853 763 aa20.69■□□□□ 0.9
PRPF40B-208ENST00000548436 MIIPQ5JXC2 388 aa20.69■□□□□ 0.9
PRPF40B-208ENST00000548436 SLF1Q9BQI6 1058 aa20.69■□□□□ 0.9
PRPF40B-208ENST00000548436 ZNF446Q9NWS9 450 aa20.69■□□□□ 0.9
PRPF40B-208ENST00000548436 PCDHA1Q9Y5I3 950 aa20.69■□□□□ 0.9
PRPF40B-208ENST00000548436 ARHGAP25P42331 645 aa20.69■□□□□ 0.9
PRPF40B-208ENST00000548436 KLK7P49862 253 aa20.69■□□□□ 0.9
PRPF40B-208ENST00000548436 CDC37Q16543 378 aaPredicted RBP20.69■□□□□ 0.9
PRPF40B-208ENST00000548436 ZNF569Q5MCW4 686 aa20.69■□□□□ 0.9
PRPF40B-208ENST00000548436 WDR59Q6PJI9 974 aa20.69■□□□□ 0.9
PRPF40B-208ENST00000548436 FAM114A1Q8IWE2 563 aa20.69■□□□□ 0.9
PRPF40B-208ENST00000548436 TTYH3Q9C0H2 523 aa20.69■□□□□ 0.9
PRPF40B-208ENST00000548436 SERPINA10Q9UK55 444 aa20.69■□□□□ 0.9
PRPF40B-208ENST00000548436 NPM3O75607 178 aaKnown RBP20.68■□□□□ 0.9
PRPF40B-208ENST00000548436 GDF11O95390 407 aa20.68■□□□□ 0.9
PRPF40B-208ENST00000548436 GCFC2P16383 781 aaKnown RBP20.68■□□□□ 0.9
PRPF40B-208ENST00000548436 MTIF2P46199 727 aaKnown RBP20.68■□□□□ 0.9
PRPF40B-208ENST00000548436 TBC1D8BQ0IIM8 1120 aa20.68■□□□□ 0.9
PRPF40B-208ENST00000548436 DDX12PQ92771 950 aa20.68■□□□□ 0.9
PRPF40B-208ENST00000548436 UIMC1Q96RL1 719 aa20.68■□□□□ 0.9
PRPF40B-208ENST00000548436 PCDHA12Q9UN75 941 aa20.68■□□□□ 0.9
PRPF40B-208ENST00000548436 CLCN6P51797 869 aa20.68■□□□□ 0.9
PRPF40B-208ENST00000548436 ICA1Q05084 483 aa20.68■□□□□ 0.9
PRPF40B-208ENST00000548436 TRIM34Q9BYJ4 488 aa20.68■□□□□ 0.9
PRPF40B-208ENST00000548436 TDRD3Q9H7E2 651 aaKnown RBP20.68■□□□□ 0.9
PRPF40B-208ENST00000548436 AGPAT5Q9NUQ2 364 aa20.68■□□□□ 0.9
PRPF40B-208ENST00000548436 REXO2Q9Y3B8 237 aaKnown RBP20.68■□□□□ 0.9
PRPF40B-208ENST00000548436 EPN1Q9Y6I3 576 aaPredicted RBP20.68■□□□□ 0.9
PRPF40B-208ENST00000548436 NDUFA10O95299 355 aa20.67■□□□□ 0.9
PRPF40B-208ENST00000548436 EHHADHQ08426 723 aa20.67■□□□□ 0.9
PRPF40B-208ENST00000548436 TMEM179Q6ZVK1 233 aa20.67■□□□□ 0.9
PRPF40B-208ENST00000548436 C7orf43Q8WVR3 580 aa20.67■□□□□ 0.9
PRPF40B-208ENST00000548436 NOC4LQ9BVI4 516 aaKnown RBP20.67■□□□□ 0.9
PRPF40B-208ENST00000548436 TNS1Q9HBL0 1735 aaKnown RBP20.66■□□□□ 0.9
PRPF40B-208ENST00000548436 F5H6K3 240 aa20.66■□□□□ 0.9
PRPF40B-208ENST00000548436 MARCH6O60337 910 aa20.66■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms