RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 ZNF202O95125 648 aa6.16□□□□□ -1.42
LIMA1-203ENST00000547825 RPS6KB1P23443 525 aa6.16□□□□□ -1.42
LIMA1-203ENST00000547825 SPA17Q15506 151 aa6.16□□□□□ -1.42
LIMA1-203ENST00000547825 TRIP4Q15650 581 aaPredicted RBP6.16□□□□□ -1.42
LIMA1-203ENST00000547825 TDRD12Q587J7 1177 aaKnown RBP6.16□□□□□ -1.42
LIMA1-203ENST00000547825 ZFYVE27Q5T4F4 411 aa6.16□□□□□ -1.42
LIMA1-203ENST00000547825 SMIM5Q71RC9 77 aa6.16□□□□□ -1.42
LIMA1-203ENST00000547825 ARHGAP30Q7Z6I6 1101 aaPredicted RBP6.16□□□□□ -1.42
LIMA1-203ENST00000547825 KCNG4Q8TDN1 519 aa6.16□□□□□ -1.42
LIMA1-203ENST00000547825 PDE11AQ9HCR9 933 aa6.16□□□□□ -1.42
LIMA1-203ENST00000547825 CTIFO43310 598 aaKnown RBP6.16□□□□□ -1.42
LIMA1-203ENST00000547825 COBLO75128 1261 aa6.16□□□□□ -1.42
LIMA1-203ENST00000547825 MYL5Q02045 173 aa6.16□□□□□ -1.42
LIMA1-203ENST00000547825 TEAD4Q15561 434 aa6.16□□□□□ -1.42
LIMA1-203ENST00000547825 WWC2Q6AWC2 1192 aa6.16□□□□□ -1.42
LIMA1-203ENST00000547825 MCF2L2Q86YR7 1114 aa6.16□□□□□ -1.42
LIMA1-203ENST00000547825 DNAJC10Q8IXB1 793 aa6.16□□□□□ -1.42
LIMA1-203ENST00000547825 NLGN1Q8N2Q7 840 aa6.16□□□□□ -1.42
LIMA1-203ENST00000547825 OTUD6BQ8N6M0 293 aa6.16□□□□□ -1.42
LIMA1-203ENST00000547825 AIDAQ96BJ3 306 aa6.16□□□□□ -1.42
LIMA1-203ENST00000547825 PGBD1Q96JS3 809 aa6.16□□□□□ -1.42
LIMA1-203ENST00000547825 ZBTB1Q9Y2K1 713 aa6.16□□□□□ -1.42
LIMA1-203ENST00000547825 GOLGA6L9A6NEM1 432 aa6.16□□□□□ -1.42
LIMA1-203ENST00000547825 HGSO14964 777 aaPredicted RBP6.16□□□□□ -1.42
LIMA1-203ENST00000547825 YEATS4O95619 227 aa6.16□□□□□ -1.42
LIMA1-203ENST00000547825 METAP2P50579 478 aaKnown RBP eCLIP6.16□□□□□ -1.42
LIMA1-203ENST00000547825 HDXQ7Z353 690 aa6.16□□□□□ -1.42
LIMA1-203ENST00000547825 NBPF11Q86T75 865 aa6.16□□□□□ -1.42
LIMA1-203ENST00000547825 ZNF589Q86UQ0 364 aaPredicted RBP6.16□□□□□ -1.42
LIMA1-203ENST00000547825 SCLT1Q96NL6 688 aa6.16□□□□□ -1.42
LIMA1-203ENST00000547825 VPS16Q9H269 839 aa6.16□□□□□ -1.42
LIMA1-203ENST00000547825 SLC12A7Q9Y666 1083 aa6.16□□□□□ -1.42
LIMA1-203ENST00000547825 V9GY48 417 aaPredicted RBP6.16□□□□□ -1.42
LIMA1-203ENST00000547825 ANKRD62A6NC57 917 aa6.15□□□□□ -1.42
LIMA1-203ENST00000547825 ADH1AP07327 375 aa6.15□□□□□ -1.42
LIMA1-203ENST00000547825 PNMA6AP0CW24 399 aaPredicted RBP6.15□□□□□ -1.42
LIMA1-203ENST00000547825 PAFAH1B1P43034 410 aa6.15□□□□□ -1.42
LIMA1-203ENST00000547825 PRELPP51888 382 aa6.15□□□□□ -1.42
LIMA1-203ENST00000547825 TOB2Q14106 344 aaPredicted RBP6.15□□□□□ -1.42
LIMA1-203ENST00000547825 DPCR1Q3MIW9 517 aa6.15□□□□□ -1.42
LIMA1-203ENST00000547825 MCMDC2Q4G0Z9 681 aa6.15□□□□□ -1.42
LIMA1-203ENST00000547825 TMEM67Q5HYA8 995 aa6.15□□□□□ -1.42
LIMA1-203ENST00000547825 C7orf43Q8WVR3 580 aa6.15□□□□□ -1.42
LIMA1-203ENST00000547825 IFT81Q8WYA0 676 aa6.15□□□□□ -1.42
LIMA1-203ENST00000547825 PLIN2Q99541 437 aa6.15□□□□□ -1.42
LIMA1-203ENST00000547825 SYT17Q9BSW7 474 aa6.15□□□□□ -1.42
LIMA1-203ENST00000547825 SPON1Q9HCB6 807 aa6.15□□□□□ -1.42
LIMA1-203ENST00000547825 HMG20BQ9P0W2 317 aa6.15□□□□□ -1.42
LIMA1-203ENST00000547825 NFE2L3Q9Y4A8 694 aa6.15□□□□□ -1.42
LIMA1-203ENST00000547825 A0A0D9SFI3 127 aa6.15□□□□□ -1.43
LIMA1-203ENST00000547825 MACROD2A1Z1Q3 448 aa6.15□□□□□ -1.43
LIMA1-203ENST00000547825 PRC1O43663 620 aa6.15□□□□□ -1.43
LIMA1-203ENST00000547825 TRIM21P19474 475 aaKnown RBP6.15□□□□□ -1.43
LIMA1-203ENST00000547825 STIM1Q13586 685 aa6.15□□□□□ -1.43
LIMA1-203ENST00000547825 CRY2Q49AN0 593 aa6.15□□□□□ -1.43
LIMA1-203ENST00000547825 RRAGBQ5VZM2 374 aa6.15□□□□□ -1.43
LIMA1-203ENST00000547825 LMBR1LQ6UX01 489 aa6.15□□□□□ -1.43
LIMA1-203ENST00000547825 COPS6Q7L5N1 327 aa6.15□□□□□ -1.43
LIMA1-203ENST00000547825 DHX32Q7L7V1 743 aaKnown RBP6.15□□□□□ -1.43
LIMA1-203ENST00000547825 DDX24Q9GZR7 859 aaKnown RBP eCLIP6.15□□□□□ -1.43
LIMA1-203ENST00000547825 SEPT11Q9NVA2 429 aaKnown RBP6.15□□□□□ -1.43
LIMA1-203ENST00000547825 DDX60LQ5H9U9 1706 aaKnown RBP6.15□□□□□ -1.43
LIMA1-203ENST00000547825 GRM8O00222 908 aa6.15□□□□□ -1.43
LIMA1-203ENST00000547825 YBX3P16989 372 aaKnown RBP eCLIP6.15□□□□□ -1.43
LIMA1-203ENST00000547825 HIRAP54198 1017 aaPredicted RBP6.15□□□□□ -1.43
LIMA1-203ENST00000547825 ARID5AQ03989 594 aa6.15□□□□□ -1.43
LIMA1-203ENST00000547825 PNOCQ13519 176 aa6.15□□□□□ -1.43
LIMA1-203ENST00000547825 CCDC178Q5BJE1 867 aa6.15□□□□□ -1.43
LIMA1-203ENST00000547825 METTL24Q5JXM2 366 aa6.15□□□□□ -1.43
LIMA1-203ENST00000547825 ZNF34Q8IZ26 560 aa6.15□□□□□ -1.43
LIMA1-203ENST00000547825 PPP1R13BQ96KQ4 1090 aa6.15□□□□□ -1.43
LIMA1-203ENST00000547825 MYL10Q9BUA6 226 aa6.15□□□□□ -1.43
LIMA1-203ENST00000547825 NAPBQ9H115 298 aa6.15□□□□□ -1.43
LIMA1-203ENST00000547825 NPHS2Q9NP85 383 aa6.15□□□□□ -1.43
LIMA1-203ENST00000547825 UBN2Q6ZU65 1347 aa6.15□□□□□ -1.43
LIMA1-203ENST00000547825 MAST2Q6P0Q8 1798 aa6.14□□□□□ -1.43
LIMA1-203ENST00000547825 ERVV-1B6SEH8 477 aa6.14□□□□□ -1.43
LIMA1-203ENST00000547825 AKR1B10O60218 316 aa6.14□□□□□ -1.43
LIMA1-203ENST00000547825 RANBP6O60518 1105 aaKnown RBP6.14□□□□□ -1.43
LIMA1-203ENST00000547825 TNFRSF21O75509 655 aa6.14□□□□□ -1.43
LIMA1-203ENST00000547825 ALDH1A1P00352 501 aa6.14□□□□□ -1.43
LIMA1-203ENST00000547825 ATP1A3P13637 1013 aa6.14□□□□□ -1.43
LIMA1-203ENST00000547825 GBP2P32456 591 aaPredicted RBP6.14□□□□□ -1.43
LIMA1-203ENST00000547825 HPDP32754 393 aaPredicted RBP6.14□□□□□ -1.43
LIMA1-203ENST00000547825 MTIF2P46199 727 aaKnown RBP6.14□□□□□ -1.43
LIMA1-203ENST00000547825 TFCP2Q12800 502 aa6.14□□□□□ -1.43
LIMA1-203ENST00000547825 NR5A1Q13285 461 aa6.14□□□□□ -1.43
LIMA1-203ENST00000547825 NECTIN1Q15223 517 aa6.14□□□□□ -1.43
LIMA1-203ENST00000547825 CCDC96Q2M329 555 aa6.14□□□□□ -1.43
LIMA1-203ENST00000547825 BEND3Q5T5X7 828 aa6.14□□□□□ -1.43
LIMA1-203ENST00000547825 NXPE4Q6UWF7 544 aa6.14□□□□□ -1.43
LIMA1-203ENST00000547825 CLEC4GQ6UXB4 293 aa6.14□□□□□ -1.43
LIMA1-203ENST00000547825 IGSF22Q8N9C0 903 aa6.14□□□□□ -1.43
LIMA1-203ENST00000547825 KCNB2Q92953 911 aa6.14□□□□□ -1.43
LIMA1-203ENST00000547825 PHKBQ93100 1093 aa6.14□□□□□ -1.43
LIMA1-203ENST00000547825 CDK5RAP3Q96JB5 506 aa6.14□□□□□ -1.43
LIMA1-203ENST00000547825 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP6.14□□□□□ -1.43
LIMA1-203ENST00000547825 TEX13AQ9BXU3 409 aaPredicted RBP6.14□□□□□ -1.43
LIMA1-203ENST00000547825 BICC1Q9H694 974 aaKnown RBP6.14□□□□□ -1.43
LIMA1-203ENST00000547825 FANCLQ9NW38 375 aa6.14□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 70.8 ms