RNA–Protein interactions for RNA: ENST00000544268.5

CHFR-223, Transcript of checkpoint with forkhead and ring finger domains, humanhuman

TSL 5

Gene CHFR, Length 2,412 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHFR-223ENST00000544268 SPATA1Q5VX52 437 aa16.8■□□□□ 0.28
CHFR-223ENST00000544268 WWC2Q6AWC2 1192 aa16.8■□□□□ 0.28
CHFR-223ENST00000544268 LRRC47Q8N1G4 583 aaKnown RBP16.8■□□□□ 0.28
CHFR-223ENST00000544268 ZBED3Q96IU2 234 aaPredicted RBP16.8■□□□□ 0.28
CHFR-223ENST00000544268 DACH1Q9UI36 760 aa16.8■□□□□ 0.28
CHFR-223ENST00000544268 CNTNAP1P78357 1384 aa16.8■□□□□ 0.28
CHFR-223ENST00000544268 TRIM49BA6NDI0 452 aa16.79■□□□□ 0.28
CHFR-223ENST00000544268 EGFRP00533 1210 aa16.79■□□□□ 0.28
CHFR-223ENST00000544268 ERCC5P28715 1186 aaPredicted RBP16.79■□□□□ 0.28
CHFR-223ENST00000544268 GNG11P61952 73 aa16.79■□□□□ 0.28
CHFR-223ENST00000544268 INF2Q27J81 1249 aa16.79■□□□□ 0.28
CHFR-223ENST00000544268 RRAGBQ5VZM2 374 aa16.79■□□□□ 0.28
CHFR-223ENST00000544268 HEATR3Q7Z4Q2 680 aa16.79■□□□□ 0.28
CHFR-223ENST00000544268 IGSF22Q8N9C0 903 aa16.79■□□□□ 0.28
CHFR-223ENST00000544268 LZTFL1Q9NQ48 299 aa16.79■□□□□ 0.28
CHFR-223ENST00000544268 ADD3Q9UEY8 706 aaKnown RBP16.79■□□□□ 0.28
CHFR-223ENST00000544268 GJA3Q9Y6H8 435 aa16.79■□□□□ 0.28
CHFR-223ENST00000544268 GREB1LQ9C091 1923 aaPredicted RBP16.79■□□□□ 0.28
CHFR-223ENST00000544268 COL2A1P02458 1487 aaPredicted RBP16.79■□□□□ 0.28
CHFR-223ENST00000544268 PALM3A6NDB9 673 aaPredicted RBP16.79■□□□□ 0.28
CHFR-223ENST00000544268 FXR1P51114 621 aaKnown RBP eCLIP16.79■□□□□ 0.28
CHFR-223ENST00000544268 CERKLQ49MI3 558 aaPredicted RBP16.79■□□□□ 0.28
CHFR-223ENST00000544268 CDKAL1Q5VV42 579 aa16.79■□□□□ 0.28
CHFR-223ENST00000544268 TATDN1Q6P1N9 297 aa16.79■□□□□ 0.28
CHFR-223ENST00000544268 USP17L2Q6R6M4 530 aa16.79■□□□□ 0.28
CHFR-223ENST00000544268 BLIDQ8IZY5 108 aa16.79■□□□□ 0.28
CHFR-223ENST00000544268 CCDC17Q96LX7 622 aa16.79■□□□□ 0.28
CHFR-223ENST00000544268 VPS16Q9H269 839 aa16.79■□□□□ 0.28
CHFR-223ENST00000544268 TTLL1O95922 423 aa16.78■□□□□ 0.28
CHFR-223ENST00000544268 CASP14P31944 242 aa16.78■□□□□ 0.28
CHFR-223ENST00000544268 GMPSP49915 693 aaPredicted RBP16.78■□□□□ 0.28
CHFR-223ENST00000544268 ARHGAP27Q6ZUM4 889 aa16.78■□□□□ 0.28
CHFR-223ENST00000544268 FAM151AQ8WW52 585 aa16.78■□□□□ 0.28
CHFR-223ENST00000544268 DEF6Q9H4E7 631 aa16.78■□□□□ 0.28
CHFR-223ENST00000544268 PMS1P54277 932 aaKnown RBP16.78■□□□□ 0.28
CHFR-223ENST00000544268 RBM26Q5T8P6 1007 aaKnown RBP16.78■□□□□ 0.28
CHFR-223ENST00000544268 CDAN1Q8IWY9 1227 aa16.78■□□□□ 0.28
CHFR-223ENST00000544268 PLCD4Q9BRC7 762 aa16.78■□□□□ 0.28
CHFR-223ENST00000544268 TAB2Q9NYJ8 693 aa16.78■□□□□ 0.28
CHFR-223ENST00000544268 ZNF541Q9H0D2 1346 aa16.78■□□□□ 0.28
CHFR-223ENST00000544268 USP17L5A8MUK1 530 aa16.77■□□□□ 0.28
CHFR-223ENST00000544268 RPS12P25398 132 aaKnown RBP16.77■□□□□ 0.28
CHFR-223ENST00000544268 GNAQP50148 359 aa16.77■□□□□ 0.28
CHFR-223ENST00000544268 ZNF280AP59817 542 aaPredicted RBP16.77■□□□□ 0.28
CHFR-223ENST00000544268 NAALADL2Q58DX5 795 aa16.77■□□□□ 0.28
CHFR-223ENST00000544268 JAKMIP3Q5VZ66 844 aa16.77■□□□□ 0.28
CHFR-223ENST00000544268 PPM1EQ8WY54 764 aa16.77■□□□□ 0.28
CHFR-223ENST00000544268 DRC1Q96MC2 740 aa16.77■□□□□ 0.28
CHFR-223ENST00000544268 GSDMAQ96QA5 445 aa16.77■□□□□ 0.28
CHFR-223ENST00000544268 TMEM39BQ9GZU3 492 aa16.77■□□□□ 0.28
CHFR-223ENST00000544268 PCDHA6Q9UN73 950 aa16.77■□□□□ 0.28
CHFR-223ENST00000544268 SCAF8Q9UPN6 1271 aaKnown RBP16.77■□□□□ 0.28
CHFR-223ENST00000544268 PCDHA8Q9Y5H6 950 aa16.77■□□□□ 0.28
CHFR-223ENST00000544268 EIF3CLB5ME19 914 aaKnown RBP16.77■□□□□ 0.27
CHFR-223ENST00000544268 KLRF2D3W0D1 207 aa16.77■□□□□ 0.27
CHFR-223ENST00000544268 MYO1BO43795 1136 aa16.77■□□□□ 0.27
CHFR-223ENST00000544268 STX10O60499 249 aa16.77■□□□□ 0.27
CHFR-223ENST00000544268 GDF11O95390 407 aa16.77■□□□□ 0.27
CHFR-223ENST00000544268 GYPCP04921 128 aa16.77■□□□□ 0.27
CHFR-223ENST00000544268 PARP1P09874 1014 aaKnown RBP16.77■□□□□ 0.27
CHFR-223ENST00000544268 PBX1P40424 430 aa16.77■□□□□ 0.27
CHFR-223ENST00000544268 ATP2B2Q01814 1243 aa16.77■□□□□ 0.27
CHFR-223ENST00000544268 KRT31Q15323 416 aa16.77■□□□□ 0.27
CHFR-223ENST00000544268 MICALL2Q8IY33 904 aa16.77■□□□□ 0.27
CHFR-223ENST00000544268 EIF3CQ99613 913 aaKnown RBP16.77■□□□□ 0.27
CHFR-223ENST00000544268 ZSWIM4Q9H7M6 989 aa16.77■□□□□ 0.27
CHFR-223ENST00000544268 VAT1LQ9HCJ6 419 aa16.77■□□□□ 0.27
CHFR-223ENST00000544268 AKR1B15C9JRZ8 316 aaPredicted RBP16.76■□□□□ 0.27
CHFR-223ENST00000544268 PDHBP11177 359 aa16.76■□□□□ 0.27
CHFR-223ENST00000544268 PRCPP42785 496 aa16.76■□□□□ 0.27
CHFR-223ENST00000544268 RRP1BQ14684 758 aaKnown RBP16.76■□□□□ 0.27
CHFR-223ENST00000544268 NBPF20Q3BBV1 942 aa16.76■□□□□ 0.27
CHFR-223ENST00000544268 FKBP1CQ5VVH2 108 aa16.76■□□□□ 0.27
CHFR-223ENST00000544268 RSRC2Q7L4I2 434 aaKnown RBP16.76■□□□□ 0.27
CHFR-223ENST00000544268 KIFC2Q96AC6 838 aa16.76■□□□□ 0.27
CHFR-223ENST00000544268 CEP83Q9Y592 693 aa16.76■□□□□ 0.27
CHFR-223ENST00000544268 H3BQF6 201 aa16.76■□□□□ 0.27
CHFR-223ENST00000544268 M0R2N6 131 aa16.76■□□□□ 0.27
CHFR-223ENST00000544268 MAP2K7O14733 419 aa16.76■□□□□ 0.27
CHFR-223ENST00000544268 IRF6O14896 467 aa16.76■□□□□ 0.27
CHFR-223ENST00000544268 JAG1P78504 1218 aa16.76■□□□□ 0.27
CHFR-223ENST00000544268 SAMD7Q7Z3H4 446 aa16.76■□□□□ 0.27
CHFR-223ENST00000544268 SUGP1Q8IWZ8 645 aaKnown RBP16.76■□□□□ 0.27
CHFR-223ENST00000544268 RABGGTAQ92696 567 aa16.76■□□□□ 0.27
CHFR-223ENST00000544268 PARD6BQ9BYG5 372 aa16.76■□□□□ 0.27
CHFR-223ENST00000544268 PCDHA4Q9UN74 947 aa16.76■□□□□ 0.27
CHFR-223ENST00000544268 MYH4Q9Y623 1939 aa16.75■□□□□ 0.27
CHFR-223ENST00000544268 NKRFO15226 690 aaKnown RBP eCLIP16.75■□□□□ 0.27
CHFR-223ENST00000544268 SEPT2Q15019 361 aa16.75■□□□□ 0.27
CHFR-223ENST00000544268 ACRBPQ8NEB7 543 aa16.75■□□□□ 0.27
CHFR-223ENST00000544268 NELFBQ8WX92 580 aa16.75■□□□□ 0.27
CHFR-223ENST00000544268 SYT17Q9BSW7 474 aa16.75■□□□□ 0.27
CHFR-223ENST00000544268 CNOT7Q9UIV1 285 aaKnown RBP16.75■□□□□ 0.27
CHFR-223ENST00000544268 FRMPD2Q68DX3 1309 aaPredicted RBP16.75■□□□□ 0.27
CHFR-223ENST00000544268 ZSCAN12O43309 604 aa16.75■□□□□ 0.27
CHFR-223ENST00000544268 RPN1P04843 607 aaKnown RBP16.75■□□□□ 0.27
CHFR-223ENST00000544268 MAP3K9P80192 1104 aa16.75■□□□□ 0.27
CHFR-223ENST00000544268 ABCB5Q2M3G0 1257 aa16.75■□□□□ 0.27
CHFR-223ENST00000544268 SWT1Q5T5J6 900 aaKnown RBP16.75■□□□□ 0.27
CHFR-223ENST00000544268 XPO5Q9HAV4 1204 aaKnown RBP eCLIP16.75■□□□□ 0.274e-18■■■■■ 49.5
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms