RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 LRRC53A6NM62 1247 aa14.18□□□□□ -0.14
SFSWAP-209ENST00000540469 BUB1BO60566 1050 aaPredicted RBP14.18□□□□□ -0.14
SFSWAP-209ENST00000540469 CCNE1P24864 410 aa14.18□□□□□ -0.14
SFSWAP-209ENST00000540469 RASGRF1Q13972 1273 aa14.18□□□□□ -0.14
SFSWAP-209ENST00000540469 GKAP1Q5VSY0 366 aaPredicted RBP14.18□□□□□ -0.14
SFSWAP-209ENST00000540469 FMNL3Q8IVF7 1028 aa14.18□□□□□ -0.14
SFSWAP-209ENST00000540469 TRIM6Q9C030 488 aaPredicted RBP14.18□□□□□ -0.14
SFSWAP-209ENST00000540469 SLC8A1P32418 973 aa14.18□□□□□ -0.14
SFSWAP-209ENST00000540469 SLC1A4P43007 532 aa14.18□□□□□ -0.14
SFSWAP-209ENST00000540469 DRP2Q13474 957 aa14.18□□□□□ -0.14
SFSWAP-209ENST00000540469 PUM3Q15397 648 aaKnown RBP14.18□□□□□ -0.14
SFSWAP-209ENST00000540469 IL17AQ16552 155 aa14.18□□□□□ -0.14
SFSWAP-209ENST00000540469 PNMA8AQ86V59 439 aaPredicted RBP14.18□□□□□ -0.14
SFSWAP-209ENST00000540469 TEX11Q8IYF3 940 aa14.18□□□□□ -0.14
SFSWAP-209ENST00000540469 ZBTB38Q8NAP3 1195 aaPredicted RBP14.18□□□□□ -0.14
SFSWAP-209ENST00000540469 CASKIN2Q8WXE0 1202 aa14.18□□□□□ -0.14
SFSWAP-209ENST00000540469 TLR10Q9BXR5 811 aa14.18□□□□□ -0.14
SFSWAP-209ENST00000540469 DDX20Q9UHI6 824 aaKnown RBP14.18□□□□□ -0.14
SFSWAP-209ENST00000540469 TMCO5BA8MYB1 307 aa14.17□□□□□ -0.14
SFSWAP-209ENST00000540469 RASSF9O75901 435 aa14.17□□□□□ -0.14
SFSWAP-209ENST00000540469 FUKQ8N0W3 1084 aa14.17□□□□□ -0.14
SFSWAP-209ENST00000540469 MTMR8Q96EF0 704 aa14.17□□□□□ -0.14
SFSWAP-209ENST00000540469 TCP11L1Q9NUJ3 509 aa14.17□□□□□ -0.14
SFSWAP-209ENST00000540469 PLAGL2Q9UPG8 496 aa14.17□□□□□ -0.14
SFSWAP-209ENST00000540469 CYP2D7A0A087X1C5 515 aa14.17□□□□□ -0.14
SFSWAP-209ENST00000540469 SCG2P13521 617 aa14.17□□□□□ -0.14
SFSWAP-209ENST00000540469 TRADDQ15628 312 aa14.17□□□□□ -0.14
SFSWAP-209ENST00000540469 HIBCHQ6NVY1 386 aaPredicted RBP14.17□□□□□ -0.14
SFSWAP-209ENST00000540469 RUFY4Q6ZNE9 571 aa14.17□□□□□ -0.14
SFSWAP-209ENST00000540469 LPIN2Q92539 896 aa14.17□□□□□ -0.14
SFSWAP-209ENST00000540469 ISCA1Q9BUE6 129 aa14.17□□□□□ -0.14
SFSWAP-209ENST00000540469 TTYH3Q9C0H2 523 aa14.17□□□□□ -0.14
SFSWAP-209ENST00000540469 TPX2Q9ULW0 747 aaKnown RBP14.17□□□□□ -0.14
SFSWAP-209ENST00000540469 MYO5AQ9Y4I1 1855 aaKnown RBP14.17□□□□□ -0.14
SFSWAP-209ENST00000540469 IRS4O14654 1257 aaPredicted RBP14.16□□□□□ -0.14
SFSWAP-209ENST00000540469 C21orf2O43822 256 aa14.16□□□□□ -0.14
SFSWAP-209ENST00000540469 PALMO75781 387 aa14.16□□□□□ -0.14
SFSWAP-209ENST00000540469 CALM1P0DP23 149 aa14.16□□□□□ -0.14
SFSWAP-209ENST00000540469 CALM2P0DP24 149 aa14.16□□□□□ -0.14
SFSWAP-209ENST00000540469 CALM3P0DP25 149 aa14.16□□□□□ -0.14
SFSWAP-209ENST00000540469 DUSP9Q99956 384 aaKnown RBP14.16□□□□□ -0.14
SFSWAP-209ENST00000540469 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.16□□□□□ -0.142e-6■□□□□ 10.7
SFSWAP-209ENST00000540469 NOVA2Q9UNW9 492 aaKnown RBP14.16□□□□□ -0.14
SFSWAP-209ENST00000540469 SLIT3O75094 1523 aa14.16□□□□□ -0.14
SFSWAP-209ENST00000540469 TRAPPC10P48553 1259 aa14.16□□□□□ -0.14
SFSWAP-209ENST00000540469 RCAN1P53805 252 aa14.16□□□□□ -0.14
SFSWAP-209ENST00000540469 ITGB3BPQ13352 177 aaPredicted RBP14.16□□□□□ -0.14
SFSWAP-209ENST00000540469 KRT71Q3SY84 523 aa14.16□□□□□ -0.14
SFSWAP-209ENST00000540469 PPP4R3AQ6IN85 833 aa14.16□□□□□ -0.14
SFSWAP-209ENST00000540469 CCDC155Q8N6L0 562 aa14.16□□□□□ -0.14
SFSWAP-209ENST00000540469 GIMAP8Q8ND71 665 aaPredicted RBP14.16□□□□□ -0.14
SFSWAP-209ENST00000540469 GPKOWQ92917 476 aaPredicted RBP eCLIP14.16□□□□□ -0.14
SFSWAP-209ENST00000540469 HPS3Q969F9 1004 aa14.16□□□□□ -0.14
SFSWAP-209ENST00000540469 LRRC45Q96CN5 670 aa14.16□□□□□ -0.14
SFSWAP-209ENST00000540469 SLC39A2Q9NP94 309 aa14.16□□□□□ -0.14
SFSWAP-209ENST00000540469 SMIM22K7EJ46 135 aa14.16□□□□□ -0.14
SFSWAP-209ENST00000540469 FCER1AP12319 257 aa14.16□□□□□ -0.14
SFSWAP-209ENST00000540469 EGFL6Q8IUX8 553 aa14.16□□□□□ -0.14
SFSWAP-209ENST00000540469 TCP11Q8WWU5 503 aa14.16□□□□□ -0.14
SFSWAP-209ENST00000540469 SEC16BQ96JE7 1060 aa14.16□□□□□ -0.14
SFSWAP-209ENST00000540469 NDST4Q9H3R1 872 aa14.16□□□□□ -0.14
SFSWAP-209ENST00000540469 MYH13Q9UKX3 1938 aa14.16□□□□□ -0.14
SFSWAP-209ENST00000540469 ECM29Q5VYK3 1845 aa14.15□□□□□ -0.14
SFSWAP-209ENST00000540469 CCDC189A1A4V9 331 aa14.15□□□□□ -0.14
SFSWAP-209ENST00000540469 OPLAHO14841 1288 aa14.15□□□□□ -0.14
SFSWAP-209ENST00000540469 CLTAP09496 248 aa14.15□□□□□ -0.14
SFSWAP-209ENST00000540469 CTSWP56202 376 aa14.15□□□□□ -0.14
SFSWAP-209ENST00000540469 KCNB1Q14721 858 aa14.15□□□□□ -0.14
SFSWAP-209ENST00000540469 CCDC84Q86UT8 332 aaPredicted RBP14.15□□□□□ -0.14
SFSWAP-209ENST00000540469 PROCA1Q8NCQ7 364 aaPredicted RBP14.15□□□□□ -0.14
SFSWAP-209ENST00000540469 HVCN1Q96D96 273 aa14.15□□□□□ -0.14
SFSWAP-209ENST00000540469 RASSF10A6NK89 507 aa14.15□□□□□ -0.14
SFSWAP-209ENST00000540469 KCNK3O14649 394 aa14.15□□□□□ -0.14
SFSWAP-209ENST00000540469 EPHB6O15197 1021 aa14.15□□□□□ -0.14
SFSWAP-209ENST00000540469 RAD51CO43502 376 aa14.15□□□□□ -0.14
SFSWAP-209ENST00000540469 RHOBTB3O94955 611 aa14.15□□□□□ -0.14
SFSWAP-209ENST00000540469 STK4Q13043 487 aa14.15□□□□□ -0.14
SFSWAP-209ENST00000540469 KLHDC7AQ5VTJ3 777 aa14.15□□□□□ -0.14
SFSWAP-209ENST00000540469 ARL6IP4Q66PJ3 421 aaKnown RBP14.15□□□□□ -0.14
SFSWAP-209ENST00000540469 TMTC3Q6ZXV5 915 aa14.15□□□□□ -0.14
SFSWAP-209ENST00000540469 GDF3Q9NR23 364 aa14.15□□□□□ -0.14
SFSWAP-209ENST00000540469 RNF14Q9UBS8 474 aa14.15□□□□□ -0.14
SFSWAP-209ENST00000540469 SALL4Q9UJQ4 1053 aa14.15□□□□□ -0.14
SFSWAP-209ENST00000540469 CEP104O60308 925 aa14.15□□□□□ -0.14
SFSWAP-209ENST00000540469 CALML3P27482 149 aa14.15□□□□□ -0.14
SFSWAP-209ENST00000540469 TNFRSF8P28908 595 aa14.15□□□□□ -0.14
SFSWAP-209ENST00000540469 ARID4AP29374 1257 aaPredicted RBP14.15□□□□□ -0.14
SFSWAP-209ENST00000540469 KCTD19Q17RG1 926 aaPredicted RBP14.15□□□□□ -0.14
SFSWAP-209ENST00000540469 ANKRD20A8PQ5CZ79 823 aa14.15□□□□□ -0.14
SFSWAP-209ENST00000540469 ATRNO75882 1429 aa14.15□□□□□ -0.14
SFSWAP-209ENST00000540469 MAGEB6P1A0A0J9YX57 407 aa14.14□□□□□ -0.15
SFSWAP-209ENST00000540469 PHF20L1A8MW92 1017 aa14.14□□□□□ -0.15
SFSWAP-209ENST00000540469 GCKP35557 465 aa14.14□□□□□ -0.15
SFSWAP-209ENST00000540469 SCTRP47872 440 aa14.14□□□□□ -0.15
SFSWAP-209ENST00000540469 CDK17Q00537 523 aa14.14□□□□□ -0.15
SFSWAP-209ENST00000540469 QPCTQ16769 361 aa14.14□□□□□ -0.15
SFSWAP-209ENST00000540469 SLC4A8Q2Y0W8 1093 aa14.14□□□□□ -0.15
SFSWAP-209ENST00000540469 SLC9C1Q4G0N8 1177 aa14.14□□□□□ -0.15
SFSWAP-209ENST00000540469 VWA3BQ502W6 1294 aa14.14□□□□□ -0.15
SFSWAP-209ENST00000540469 DDX42Q86XP3 938 aaKnown RBP eCLIP14.14□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms