RNA–Protein interactions for RNA: ENST00000533946.5

SSBP3-215, Transcript of single stranded DNA binding protein 3, human

TSL 3

Gene SSBP3, Length 431 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SSBP3-215	ENST00000533946	SCN5A	Q14524	2016 aa		11.23	□□□□□ -0.61
SSBP3-215	ENST00000533946	KIAA0355	O15063	1070 aa		11.22	□□□□□ -0.61
SSBP3-215	ENST00000533946	CLTB	P09497	229 aa		11.22	□□□□□ -0.61
SSBP3-215	ENST00000533946	ACR	P10323	421 aa		11.22	□□□□□ -0.61
SSBP3-215	ENST00000533946	CYP2C18	P33260	490 aa		11.22	□□□□□ -0.61
SSBP3-215	ENST00000533946	SP2	Q02086	613 aa		11.22	□□□□□ -0.61
SSBP3-215	ENST00000533946	DUSP28	Q4G0W2	176 aa		11.22	□□□□□ -0.61
SSBP3-215	ENST00000533946	C1orf53	Q5VUE5	145 aa		11.22	□□□□□ -0.61
SSBP3-215	ENST00000533946	IQSEC1	Q6DN90	963 aa		11.22	□□□□□ -0.61
SSBP3-215	ENST00000533946	ANKRD33	Q7Z3H0	272 aa		11.22	□□□□□ -0.61
SSBP3-215	ENST00000533946	FAM126B	Q8IXS8	530 aa		11.22	□□□□□ -0.61
SSBP3-215	ENST00000533946	CCDC82	Q8N4S0	544 aa		11.22	□□□□□ -0.61
SSBP3-215	ENST00000533946	SLC43A3	Q8NBI5	491 aa		11.22	□□□□□ -0.61
SSBP3-215	ENST00000533946	FAM161B	Q96MY7	647 aa		11.22	□□□□□ -0.61
SSBP3-215	ENST00000533946	PPP1R12C	Q9BZL4	782 aa		11.22	□□□□□ -0.61
SSBP3-215	ENST00000533946	VTA1	Q9NP79	307 aa		11.22	□□□□□ -0.61
SSBP3-215	ENST00000533946	TRMT13	Q9NUP7	481 aa	Known RBP	11.22	□□□□□ -0.61
SSBP3-215	ENST00000533946	TMEM39A	Q9NV64	488 aa		11.22	□□□□□ -0.61
SSBP3-215	ENST00000533946	PCDHA1	Q9Y5I3	950 aa		11.22	□□□□□ -0.61
SSBP3-215	ENST00000533946	ABCB11	O95342	1321 aa		11.21	□□□□□ -0.61
SSBP3-215	ENST00000533946	GRXCR1	A8MXD5	290 aa		11.21	□□□□□ -0.61
SSBP3-215	ENST00000533946	ARVCF	O00192	962 aa		11.21	□□□□□ -0.61
SSBP3-215	ENST00000533946	ZBTB5	O15062	677 aa		11.21	□□□□□ -0.61
SSBP3-215	ENST00000533946	B4GALT4	O60513	344 aa		11.21	□□□□□ -0.61
SSBP3-215	ENST00000533946	PPFIA3	O75145	1194 aa		11.21	□□□□□ -0.61
SSBP3-215	ENST00000533946	CD4	P01730	458 aa		11.21	□□□□□ -0.61
SSBP3-215	ENST00000533946	MYL3	P08590	195 aa		11.21	□□□□□ -0.61
SSBP3-215	ENST00000533946	HSD17B4	P51659	736 aa		11.21	□□□□□ -0.61
SSBP3-215	ENST00000533946	ARHGAP1	Q07960	439 aa		11.21	□□□□□ -0.61
SSBP3-215	ENST00000533946	PDE4D	Q08499	809 aa		11.21	□□□□□ -0.61
SSBP3-215	ENST00000533946	TRDN	Q13061	729 aa		11.21	□□□□□ -0.61
SSBP3-215	ENST00000533946	HIC1	Q14526	733 aa		11.21	□□□□□ -0.61
SSBP3-215	ENST00000533946	CCDC178	Q5BJE1	867 aa		11.21	□□□□□ -0.61
SSBP3-215	ENST00000533946	RALYL	Q86SE5	291 aa	Known RBP	11.21	□□□□□ -0.61
SSBP3-215	ENST00000533946	CCDC136	Q96JN2	1154 aa		11.21	□□□□□ -0.61
SSBP3-215	ENST00000533946	CTAGE1	Q96RT6	745 aa		11.21	□□□□□ -0.61
SSBP3-215	ENST00000533946	RMDN3	Q96TC7	470 aa		11.21	□□□□□ -0.61
SSBP3-215	ENST00000533946	TET1	Q8NFU7	2136 aa		11.2	□□□□□ -0.62
SSBP3-215	ENST00000533946	TRIP12	Q14669	1992 aa	Predicted RBP	11.2	□□□□□ -0.62
SSBP3-215	ENST00000533946	SCN10A	Q9Y5Y9	1956 aa		11.2	□□□□□ -0.62
SSBP3-215	ENST00000533946	MOXD2P	A6NHM9	499 aa		11.2	□□□□□ -0.62
SSBP3-215	ENST00000533946	TXN	P10599	105 aa	Known RBP	11.2	□□□□□ -0.62
SSBP3-215	ENST00000533946	CYP2C9	P11712	490 aa		11.2	□□□□□ -0.62
SSBP3-215	ENST00000533946	MYCL	P12524	364 aa	Predicted RBP	11.2	□□□□□ -0.62
SSBP3-215	ENST00000533946	CHMP4BP1	P59074	171 aa		11.2	□□□□□ -0.62
SSBP3-215	ENST00000533946	EXOSC10	Q01780	885 aa	Known RBP	11.2	□□□□□ -0.62
SSBP3-215	ENST00000533946	ITGA7	Q13683	1181 aa		11.2	□□□□□ -0.62
SSBP3-215	ENST00000533946	TYW1B	Q6NUM6	668 aa		11.2	□□□□□ -0.62
SSBP3-215	ENST00000533946	USP17L6P	Q6QN14	398 aa		11.2	□□□□□ -0.62
SSBP3-215	ENST00000533946	FCHSD1	Q86WN1	690 aa		11.2	□□□□□ -0.62
SSBP3-215	ENST00000533946	RGS22	Q8NE09	1264 aa		11.2	□□□□□ -0.62
SSBP3-215	ENST00000533946	OR6J1	Q8NGC5	347 aa		11.2	□□□□□ -0.62
SSBP3-215	ENST00000533946	AFG1L	Q8WV93	481 aa		11.2	□□□□□ -0.62
SSBP3-215	ENST00000533946	GLT1D1	Q96MS3	346 aa		11.2	□□□□□ -0.62
SSBP3-215	ENST00000533946	LBHD1	Q9BQE6	289 aa	Predicted RBP	11.2	□□□□□ -0.62
SSBP3-215	ENST00000533946	LARP6	Q9BRS8	491 aa	Known RBP	11.2	□□□□□ -0.62
SSBP3-215	ENST00000533946	AMN	Q9BXJ7	453 aa		11.2	□□□□□ -0.62
SSBP3-215	ENST00000533946	AP5M1	Q9H0R1	490 aa		11.2	□□□□□ -0.62
SSBP3-215	ENST00000533946	WNT8A	Q9H1J5	351 aa		11.2	□□□□□ -0.62
SSBP3-215	ENST00000533946	PXMP2	Q9NR77	195 aa		11.2	□□□□□ -0.62
SSBP3-215	ENST00000533946	FAM217B	Q9NTX9	383 aa	Predicted RBP	11.2	□□□□□ -0.62
SSBP3-215	ENST00000533946	ADD3	Q9UEY8	706 aa	Known RBP	11.2	□□□□□ -0.62
SSBP3-215	ENST00000533946	ELP1	O95163	1332 aa		11.19	□□□□□ -0.62
SSBP3-215	ENST00000533946		A0A0U1RQG5	324 aa	Predicted RBP	11.19	□□□□□ -0.62
SSBP3-215	ENST00000533946	NR3C2	P08235	984 aa		11.19	□□□□□ -0.62
SSBP3-215	ENST00000533946	CSF2RA	P15509	400 aa		11.19	□□□□□ -0.62
SSBP3-215	ENST00000533946	CCL23	P55773	120 aa		11.19	□□□□□ -0.62
SSBP3-215	ENST00000533946	MRPS9	P82933	396 aa	Known RBP	11.19	□□□□□ -0.62
SSBP3-215	ENST00000533946	PURA	Q00577	322 aa	Known RBP	11.19	□□□□□ -0.62
SSBP3-215	ENST00000533946	SEMA3F	Q13275	785 aa		11.19	□□□□□ -0.62
SSBP3-215	ENST00000533946	NBPF20	Q3BBV1	942 aa		11.19	□□□□□ -0.62
SSBP3-215	ENST00000533946	LRIT3	Q3SXY7	679 aa		11.19	□□□□□ -0.62
SSBP3-215	ENST00000533946	PCSK9	Q8NBP7	692 aa	Known RBP	11.19	□□□□□ -0.62
SSBP3-215	ENST00000533946	KAT2B	Q92831	832 aa		11.19	□□□□□ -0.62
SSBP3-215	ENST00000533946	SCLY	Q96I15	445 aa		11.19	□□□□□ -0.62
SSBP3-215	ENST00000533946	BUD13	Q9BRD0	619 aa	Known RBP eCLIP	11.19	□□□□□ -0.62	2e-7	■□□□□ 10
SSBP3-215	ENST00000533946	PDCD2L	Q9BRP1	358 aa		11.19	□□□□□ -0.62
SSBP3-215	ENST00000533946	CXXC1	Q9P0U4	656 aa	Predicted RBP	11.19	□□□□□ -0.62
SSBP3-215	ENST00000533946	DDX41	Q9UJV9	622 aa	Known RBP	11.19	□□□□□ -0.62
SSBP3-215	ENST00000533946	MRPL11	Q9Y3B7	192 aa	Known RBP	11.19	□□□□□ -0.62
SSBP3-215	ENST00000533946	PNMA6F	A0A0J9YX94	578 aa		11.18	□□□□□ -0.62
SSBP3-215	ENST00000533946		A0A1W2PPC1	479 aa		11.18	□□□□□ -0.62
SSBP3-215	ENST00000533946	CDC45	O75419	566 aa		11.18	□□□□□ -0.62
SSBP3-215	ENST00000533946	TIMP1	P01033	207 aa		11.18	□□□□□ -0.62
SSBP3-215	ENST00000533946	RAG1	P15918	1043 aa		11.18	□□□□□ -0.62
SSBP3-215	ENST00000533946	CDC27	P30260	824 aa		11.18	□□□□□ -0.62
SSBP3-215	ENST00000533946	MCM5	P33992	734 aa		11.18	□□□□□ -0.62
SSBP3-215	ENST00000533946	PBX2	P40425	430 aa		11.18	□□□□□ -0.62
SSBP3-215	ENST00000533946	ZNF200	P98182	395 aa	Predicted RBP	11.18	□□□□□ -0.62
SSBP3-215	ENST00000533946	GHRHR	Q02643	423 aa		11.18	□□□□□ -0.62
SSBP3-215	ENST00000533946	FUT2	Q10981	343 aa		11.18	□□□□□ -0.62
SSBP3-215	ENST00000533946	PGM5	Q15124	567 aa		11.18	□□□□□ -0.62
SSBP3-215	ENST00000533946	UBE2S	Q16763	222 aa		11.18	□□□□□ -0.62
SSBP3-215	ENST00000533946	TCTN1	Q2MV58	587 aa		11.18	□□□□□ -0.62
SSBP3-215	ENST00000533946	ARHGEF16	Q5VV41	709 aa		11.18	□□□□□ -0.62
SSBP3-215	ENST00000533946	CATIP	Q7Z7H3	387 aa		11.18	□□□□□ -0.62
SSBP3-215	ENST00000533946	DEFB123	Q8N688	67 aa		11.18	□□□□□ -0.62
SSBP3-215	ENST00000533946	DNER	Q8NFT8	737 aa		11.18	□□□□□ -0.62
SSBP3-215	ENST00000533946	WNT8B	Q93098	351 aa		11.18	□□□□□ -0.62
SSBP3-215	ENST00000533946	TOX2	Q96NM4	488 aa		11.18	□□□□□ -0.62

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