RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 CIITAP33076 1130 aa23.81■■□□□ 1.4
VPS28-208ENST00000527797 GTF2A2P52657 109 aa23.81■■□□□ 1.4
VPS28-208ENST00000527797 PLS1Q14651 629 aa23.81■■□□□ 1.4
VPS28-208ENST00000527797 USP49Q70CQ1 688 aa23.81■■□□□ 1.4
VPS28-208ENST00000527797 MBOAT7Q96N66 472 aa23.81■■□□□ 1.4
VPS28-208ENST00000527797 RLFQ13129 1914 aa23.8■■□□□ 1.4
VPS28-208ENST00000527797 PARP14Q460N5 1801 aa23.8■■□□□ 1.4
VPS28-208ENST00000527797 CETPP11597 493 aa23.8■■□□□ 1.4
VPS28-208ENST00000527797 GPAT2Q6NUI2 795 aa23.8■■□□□ 1.4
VPS28-208ENST00000527797 RBM43Q6ZSC3 357 aaKnown RBP23.8■■□□□ 1.4
VPS28-208ENST00000527797 RABGAP1Q9Y3P9 1069 aa23.8■■□□□ 1.4
VPS28-208ENST00000527797 PTPRFP10586 1907 aa23.8■■□□□ 1.4
VPS28-208ENST00000527797 MARCH6O60337 910 aa23.79■■□□□ 1.4
VPS28-208ENST00000527797 ZNF76P36508 570 aa23.79■■□□□ 1.4
VPS28-208ENST00000527797 TXKP42681 527 aa23.79■■□□□ 1.4
VPS28-208ENST00000527797 NSMFQ6X4W1 530 aa23.79■■□□□ 1.4
VPS28-208ENST00000527797 RNF207Q6ZRF8 634 aa23.79■■□□□ 1.4
VPS28-208ENST00000527797 GPBP1L1Q9HC44 474 aaPredicted RBP23.79■■□□□ 1.4
VPS28-208ENST00000527797 TXLNAP40222 546 aa23.78■■□□□ 1.4
VPS28-208ENST00000527797 HERVK_113P62684 666 aa23.78■■□□□ 1.4
VPS28-208ENST00000527797 TMEM266Q2M3C6 531 aa23.78■■□□□ 1.4
VPS28-208ENST00000527797 Q4G0T1 1027 aa23.78■■□□□ 1.4
VPS28-208ENST00000527797 CKAP2LQ8IYA6 745 aa23.78■■□□□ 1.4
VPS28-208ENST00000527797 SYTL5Q8TDW5 730 aaPredicted RBP23.78■■□□□ 1.4
VPS28-208ENST00000527797 AK8Q96MA6 479 aa23.78■■□□□ 1.4
VPS28-208ENST00000527797 PANK2Q9BZ23 570 aa23.78■■□□□ 1.4
VPS28-208ENST00000527797 MAF1Q9H063 256 aa23.78■■□□□ 1.4
VPS28-208ENST00000527797 ACAD9Q9H845 621 aa23.78■■□□□ 1.4
VPS28-208ENST00000527797 POLR2DO15514 142 aaKnown RBP23.77■■□□□ 1.4
VPS28-208ENST00000527797 TECP42680 631 aa23.77■■□□□ 1.4
VPS28-208ENST00000527797 RPS6P62753 249 aaKnown RBP23.77■■□□□ 1.4
VPS28-208ENST00000527797 KRBA2Q6ZNG9 492 aa23.77■■□□□ 1.4
VPS28-208ENST00000527797 GAS2L3Q86XJ1 694 aa23.77■■□□□ 1.4
VPS28-208ENST00000527797 MS4A4AQ96JQ5 239 aa23.77■■□□□ 1.4
VPS28-208ENST00000527797 PYM1Q9BRP8 204 aaKnown RBP23.77■■□□□ 1.4
VPS28-208ENST00000527797 SMCHD1A6NHR9 2005 aa23.77■■□□□ 1.4
VPS28-208ENST00000527797 GOLGA6L3A6NEY3 463 aa23.77■■□□□ 1.4
VPS28-208ENST00000527797 ZBTB48P10074 688 aaPredicted RBP23.77■■□□□ 1.4
VPS28-208ENST00000527797 FXR2P51116 673 aaKnown RBP eCLIP23.77■■□□□ 1.4
VPS28-208ENST00000527797 HUNKP57058 714 aa23.77■■□□□ 1.4
VPS28-208ENST00000527797 LONRF3Q496Y0 759 aa23.77■■□□□ 1.4
VPS28-208ENST00000527797 PRR16Q569H4 304 aa23.77■■□□□ 1.4
VPS28-208ENST00000527797 SPRYD7Q5W111 196 aa23.77■■□□□ 1.4
VPS28-208ENST00000527797 POTEEQ6S8J3 1075 aa23.77■■□□□ 1.4
VPS28-208ENST00000527797 PDILTQ8N807 584 aa23.77■■□□□ 1.4
VPS28-208ENST00000527797 CNNM3Q8NE01 707 aa23.77■■□□□ 1.4
VPS28-208ENST00000527797 CHST13Q8NET6 341 aa23.77■■□□□ 1.4
VPS28-208ENST00000527797 RAB34Q9BZG1 259 aa23.77■■□□□ 1.4
VPS28-208ENST00000527797 BTBD7Q9P203 1132 aa23.77■■□□□ 1.4
VPS28-208ENST00000527797 COL20A1Q9P218 1284 aa23.77■■□□□ 1.4
VPS28-208ENST00000527797 RPTORQ8N122 1335 aa23.76■■□□□ 1.39
VPS28-208ENST00000527797 TBX3O15119 743 aa23.76■■□□□ 1.39
VPS28-208ENST00000527797 MKRN3Q13064 507 aaKnown RBP23.76■■□□□ 1.39
VPS28-208ENST00000527797 SLC30A10Q6XR72 485 aa23.76■■□□□ 1.39
VPS28-208ENST00000527797 HAS1Q92839 578 aa23.76■■□□□ 1.39
VPS28-208ENST00000527797 TSPY26PQ9H489 355 aa23.76■■□□□ 1.39
VPS28-208ENST00000527797 PNMA3Q9UL41 463 aa23.76■■□□□ 1.39
VPS28-208ENST00000527797 CCL15-CCL14A0A0B4J2E2 113 aa23.75■■□□□ 1.39
VPS28-208ENST00000527797 FAM86B1E9PN63 330 aa23.75■■□□□ 1.39
VPS28-208ENST00000527797 FAM86B2P0C5J1 330 aa23.75■■□□□ 1.39
VPS28-208ENST00000527797 UBA7P41226 1012 aa23.75■■□□□ 1.39
VPS28-208ENST00000527797 UBXN2AP68543 259 aa23.75■■□□□ 1.39
VPS28-208ENST00000527797 BAATQ14032 418 aaPredicted RBP23.75■■□□□ 1.39
VPS28-208ENST00000527797 PDIA5Q14554 519 aa23.75■■□□□ 1.39
VPS28-208ENST00000527797 CCL15Q16663 113 aa23.75■■□□□ 1.39
VPS28-208ENST00000527797 RIOX2Q8IUF8 465 aa23.75■■□□□ 1.39
VPS28-208ENST00000527797 ELOA2Q8IYF1 753 aaPredicted RBP23.75■■□□□ 1.39
VPS28-208ENST00000527797 SLFN12Q8IYM2 578 aa23.75■■□□□ 1.39
VPS28-208ENST00000527797 CCSER1Q9C0I3 900 aa23.75■■□□□ 1.39
VPS28-208ENST00000527797 TTC12Q9H892 705 aaPredicted RBP23.75■■□□□ 1.39
VPS28-208ENST00000527797 KCNMB3Q9NPA1 279 aa23.75■■□□□ 1.39
VPS28-208ENST00000527797 FBXO40Q9UH90 709 aa23.75■■□□□ 1.39
VPS28-208ENST00000527797 USP25Q9UHP3 1055 aa23.75■■□□□ 1.39
VPS28-208ENST00000527797 IGSF22Q8N9C0 903 aa23.74■■□□□ 1.39
VPS28-208ENST00000527797 DHX58Q96C10 678 aa23.74■■□□□ 1.39
VPS28-208ENST00000527797 TAAR1Q96RJ0 339 aa23.74■■□□□ 1.39
VPS28-208ENST00000527797 PAGR1Q9BTK6 254 aa23.74■■□□□ 1.39
VPS28-208ENST00000527797 SPATC1LQ9H0A9 340 aa23.74■■□□□ 1.39
VPS28-208ENST00000527797 SERTAD1Q9UHV2 236 aa23.74■■□□□ 1.39
VPS28-208ENST00000527797 HOOK1Q9UJC3 728 aaKnown RBP23.74■■□□□ 1.39
VPS28-208ENST00000527797 SLC45A1Q9Y2W3 748 aa23.74■■□□□ 1.39
VPS28-208ENST00000527797 A0A087X0B3 334 aa23.73■■□□□ 1.39
VPS28-208ENST00000527797 FSD2A1L4K1 749 aa23.73■■□□□ 1.39
VPS28-208ENST00000527797 CCDC192P0DO97 292 aa23.73■■□□□ 1.39
VPS28-208ENST00000527797 CDC25AP30304 524 aa23.73■■□□□ 1.39
VPS28-208ENST00000527797 KANK3Q6NY19 840 aa23.73■■□□□ 1.39
VPS28-208ENST00000527797 SASS6Q6UVJ0 657 aa23.73■■□□□ 1.39
VPS28-208ENST00000527797 IQUBQ8NA54 791 aa23.73■■□□□ 1.39
VPS28-208ENST00000527797 CCDC34Q96HJ3 373 aa23.73■■□□□ 1.39
VPS28-208ENST00000527797 LRWD1Q9UFC0 647 aa23.73■■□□□ 1.39
VPS28-208ENST00000527797 CCDC39Q9UFE4 941 aa23.73■■□□□ 1.39
VPS28-208ENST00000527797 PCDHA12Q9UN75 941 aa23.73■■□□□ 1.39
VPS28-208ENST00000527797 MYH7BA7E2Y1 1941 aa23.73■■□□□ 1.39
VPS28-208ENST00000527797 PP2D1A8MPX8 630 aa23.73■■□□□ 1.39
VPS28-208ENST00000527797 CNMDO75829 334 aa23.73■■□□□ 1.39
VPS28-208ENST00000527797 ANKRD23Q86SG2 305 aa23.73■■□□□ 1.39
VPS28-208ENST00000527797 ETNPPLQ8TBG4 499 aa23.73■■□□□ 1.39
VPS28-208ENST00000527797 GTF3C2Q8WUA4 911 aaPredicted RBP23.73■■□□□ 1.39
VPS28-208ENST00000527797 BRI3BPQ8WY22 251 aa23.73■■□□□ 1.39
VPS28-208ENST00000527797 LENG9Q96B70 501 aa23.73■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 138.5 ms