RNA–Protein interactions for RNA: ENST00000503360.1

HMGB1P35-201, Transcript of high mobility group box 1 pseudogene 35, humanhuman

BASIC

Gene HMGB1P35, Length 598 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P35-201ENST00000503360 FAM160A1Q05DH4 1040 aa3.92□□□□□ -1.78
HMGB1P35-201ENST00000503360 R3HDM1Q15032 1099 aaKnown RBP3.92□□□□□ -1.78
HMGB1P35-201ENST00000503360 ZNF394Q53GI3 561 aa3.92□□□□□ -1.78
HMGB1P35-201ENST00000503360 USP48Q86UV5 1035 aa3.92□□□□□ -1.78
HMGB1P35-201ENST00000503360 ZNF575Q86XF7 245 aa3.92□□□□□ -1.78
HMGB1P35-201ENST00000503360 LZTR1Q8N653 840 aa3.92□□□□□ -1.78
HMGB1P35-201ENST00000503360 AMER2Q8N7J2 671 aa3.92□□□□□ -1.78
HMGB1P35-201ENST00000503360 NGRNQ9NPE2 291 aaKnown RBP3.92□□□□□ -1.78
HMGB1P35-201ENST00000503360 COPRSQ9NQ92 184 aa3.92□□□□□ -1.78
HMGB1P35-201ENST00000503360 PCDHGB7Q9Y5F8 929 aa3.92□□□□□ -1.78
HMGB1P35-201ENST00000503360 LTBP3Q9NS15 1303 aa3.92□□□□□ -1.78
HMGB1P35-201ENST00000503360 MINDY4BA8MYZ0 360 aa3.91□□□□□ -1.78
HMGB1P35-201ENST00000503360 PATE3B3GLJ2 98 aa3.91□□□□□ -1.78
HMGB1P35-201ENST00000503360 H0Y8X5 98 aa3.91□□□□□ -1.78
HMGB1P35-201ENST00000503360 ZNF165P49910 485 aa3.91□□□□□ -1.78
HMGB1P35-201ENST00000503360 EPHB4P54760 987 aa3.91□□□□□ -1.78
HMGB1P35-201ENST00000503360 ICAM4Q14773 271 aa3.91□□□□□ -1.78
HMGB1P35-201ENST00000503360 SMN1Q16637 294 aaKnown RBP3.91□□□□□ -1.78
HMGB1P35-201ENST00000503360 PKN3Q6P5Z2 889 aa3.91□□□□□ -1.78
HMGB1P35-201ENST00000503360 CIR1Q86X95 450 aaPredicted RBP3.91□□□□□ -1.78
HMGB1P35-201ENST00000503360 MIB1Q86YT6 1006 aa3.91□□□□□ -1.78
HMGB1P35-201ENST00000503360 TXNDC5Q8NBS9 432 aaKnown RBP3.91□□□□□ -1.78
HMGB1P35-201ENST00000503360 GORASP1Q9BQQ3 440 aa3.91□□□□□ -1.78
HMGB1P35-201ENST00000503360 KBTBD4Q9NVX7 518 aa3.91□□□□□ -1.78
HMGB1P35-201ENST00000503360 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP3.91□□□□□ -1.78
HMGB1P35-201ENST00000503360 DDX41Q9UJV9 622 aaKnown RBP3.91□□□□□ -1.78
HMGB1P35-201ENST00000503360 EPB41L3Q9Y2J2 1087 aaPredicted RBP3.91□□□□□ -1.78
HMGB1P35-201ENST00000503360 PCSK5Q92824 1860 aa3.9□□□□□ -1.78
HMGB1P35-201ENST00000503360 TRBV23OR9-2A0A075B6M9 112 aa3.9□□□□□ -1.79
HMGB1P35-201ENST00000503360 TLR3O15455 904 aaKnown RBP3.9□□□□□ -1.79
HMGB1P35-201ENST00000503360 B4GALT3O60512 393 aa3.9□□□□□ -1.79
HMGB1P35-201ENST00000503360 AMHP03971 560 aa3.9□□□□□ -1.79
HMGB1P35-201ENST00000503360 C8BP07358 591 aa3.9□□□□□ -1.79
HMGB1P35-201ENST00000503360 EIF4A3P38919 411 aaKnown RBP3.9□□□□□ -1.79
HMGB1P35-201ENST00000503360 INHBEP58166 350 aa3.9□□□□□ -1.79
HMGB1P35-201ENST00000503360 ZNF445P59923 1031 aa3.9□□□□□ -1.79
HMGB1P35-201ENST00000503360 RACK1P63244 317 aaKnown RBP3.9□□□□□ -1.79
HMGB1P35-201ENST00000503360 NOL9Q5SY16 702 aaKnown RBP3.9□□□□□ -1.79
HMGB1P35-201ENST00000503360 WWC2Q6AWC2 1192 aa3.9□□□□□ -1.79
HMGB1P35-201ENST00000503360 LIMS2Q7Z4I7 341 aa3.9□□□□□ -1.79
HMGB1P35-201ENST00000503360 SLITRK4Q8IW52 837 aa3.9□□□□□ -1.79
HMGB1P35-201ENST00000503360 ZNF654Q8IZM8 581 aa3.9□□□□□ -1.79
HMGB1P35-201ENST00000503360 SLC9A7Q96T83 725 aa3.9□□□□□ -1.79
HMGB1P35-201ENST00000503360 MTA3Q9BTC8 594 aa3.9□□□□□ -1.79
HMGB1P35-201ENST00000503360 TGIF2Q9GZN2 237 aa3.9□□□□□ -1.79
HMGB1P35-201ENST00000503360 ACBD3Q9H3P7 528 aa3.9□□□□□ -1.79
HMGB1P35-201ENST00000503360 CCSER2Q9H7U1 834 aa3.9□□□□□ -1.79
HMGB1P35-201ENST00000503360 GP6Q9HCN6 339 aa3.9□□□□□ -1.79
HMGB1P35-201ENST00000503360 DIS3Q9Y2L1 958 aaKnown RBP3.9□□□□□ -1.79
HMGB1P35-201ENST00000503360 TCAF1Q9Y4C2 921 aa3.9□□□□□ -1.79
HMGB1P35-201ENST00000503360 WDR33Q9C0J8 1336 aaKnown RBP3.9□□□□□ -1.79
HMGB1P35-201ENST00000503360 NPEPPSL1A6NEC2 478 aa3.89□□□□□ -1.79
HMGB1P35-201ENST00000503360 GPR42O15529 346 aa3.89□□□□□ -1.79
HMGB1P35-201ENST00000503360 ACRP10323 421 aa3.89□□□□□ -1.79
HMGB1P35-201ENST00000503360 CD247P20963 164 aa3.89□□□□□ -1.79
HMGB1P35-201ENST00000503360 TACR1P25103 407 aa3.89□□□□□ -1.79
HMGB1P35-201ENST00000503360 ZC3H6P61129 1189 aaKnown RBP3.89□□□□□ -1.79
HMGB1P35-201ENST00000503360 KLF10Q13118 480 aa3.89□□□□□ -1.79
HMGB1P35-201ENST00000503360 SMAD4Q13485 552 aaKnown RBP3.89□□□□□ -1.79
HMGB1P35-201ENST00000503360 ETV3LQ6ZN32 361 aa3.89□□□□□ -1.79
HMGB1P35-201ENST00000503360 ZC3H18Q86VM9 953 aaKnown RBP3.89□□□□□ -1.79
HMGB1P35-201ENST00000503360 CCDC144CPQ8IYA2 1237 aa3.89□□□□□ -1.79
HMGB1P35-201ENST00000503360 DDX11Q96FC9 970 aa3.89□□□□□ -1.79
HMGB1P35-201ENST00000503360 IMPDH2P12268 514 aa3.88□□□□□ -1.79
HMGB1P35-201ENST00000503360 CRKP46108 304 aa3.88□□□□□ -1.79
HMGB1P35-201ENST00000503360 PPP2CBP62714 309 aa3.88□□□□□ -1.79
HMGB1P35-201ENST00000503360 PPP2CAP67775 309 aa3.88□□□□□ -1.79
HMGB1P35-201ENST00000503360 CLCQ05315 142 aa3.88□□□□□ -1.79
HMGB1P35-201ENST00000503360 NAALADL2Q58DX5 795 aa3.88□□□□□ -1.79
HMGB1P35-201ENST00000503360 DCP2Q8IU60 420 aaKnown RBP3.88□□□□□ -1.79
HMGB1P35-201ENST00000503360 FIBCD1Q8N539 461 aa3.88□□□□□ -1.79
HMGB1P35-201ENST00000503360 ZNF296Q8WUU4 475 aaPredicted RBP3.88□□□□□ -1.79
HMGB1P35-201ENST00000503360 MBD6Q96DN6 1003 aa3.88□□□□□ -1.79
HMGB1P35-201ENST00000503360 SPON2Q9BUD6 331 aa3.88□□□□□ -1.79
HMGB1P35-201ENST00000503360 DEF6Q9H4E7 631 aa3.88□□□□□ -1.79
HMGB1P35-201ENST00000503360 CAPN10Q9HC96 672 aa3.88□□□□□ -1.79
HMGB1P35-201ENST00000503360 C11orf21Q9P2W6 132 aa3.88□□□□□ -1.79
HMGB1P35-201ENST00000503360 ADAMTS1Q9UHI8 967 aa3.88□□□□□ -1.79
HMGB1P35-201ENST00000503360 INPP5FQ9Y2H2 1132 aa3.88□□□□□ -1.79
HMGB1P35-201ENST00000503360 HS3ST3A1Q9Y663 406 aa3.88□□□□□ -1.79
HMGB1P35-201ENST00000503360 C9IYK1 514 aa3.87□□□□□ -1.79
HMGB1P35-201ENST00000503360 MUSKO15146 869 aa3.87□□□□□ -1.79
HMGB1P35-201ENST00000503360 CYP7B1O75881 506 aa3.87□□□□□ -1.79
HMGB1P35-201ENST00000503360 ITGA4P13612 1032 aa3.87□□□□□ -1.79
HMGB1P35-201ENST00000503360 ZNF28P17035 718 aa3.87□□□□□ -1.79
HMGB1P35-201ENST00000503360 ITGA1P56199 1179 aa3.87□□□□□ -1.79
HMGB1P35-201ENST00000503360 PAK2Q13177 524 aa3.87□□□□□ -1.79
HMGB1P35-201ENST00000503360 MIIPQ5JXC2 388 aa3.87□□□□□ -1.79
HMGB1P35-201ENST00000503360 SLFN13Q68D06 897 aa3.87□□□□□ -1.79
HMGB1P35-201ENST00000503360 MCTP2Q6DN12 878 aa3.87□□□□□ -1.79
HMGB1P35-201ENST00000503360 KIAA0825Q8IV33 1275 aa3.87□□□□□ -1.79
HMGB1P35-201ENST00000503360 C8orf37Q96NL8 207 aa3.87□□□□□ -1.79
HMGB1P35-201ENST00000503360 TM9SF2Q99805 663 aa3.87□□□□□ -1.79
HMGB1P35-201ENST00000503360 NT5C1AQ9BXI3 368 aa3.87□□□□□ -1.79
HMGB1P35-201ENST00000503360 AURKAO14965 403 aa3.86□□□□□ -1.79
HMGB1P35-201ENST00000503360 ZNF623O75123 536 aa3.86□□□□□ -1.79
HMGB1P35-201ENST00000503360 CD3EP07766 207 aa3.86□□□□□ -1.79
HMGB1P35-201ENST00000503360 IFNGR1P15260 489 aa3.86□□□□□ -1.79
HMGB1P35-201ENST00000503360 SLC6A11P48066 632 aa3.86□□□□□ -1.79
HMGB1P35-201ENST00000503360 DPTQ07507 201 aa3.86□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms