RNA–Protein interactions for RNA: ENST00000493829.5

USP39-218, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2

Gene USP39, Length 1,660 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-218ENST00000493829 PCDHB6Q9Y5E3 794 aa22.08■■□□□ 1.13
USP39-218ENST00000493829 CLIC4Q9Y696 253 aa22.08■■□□□ 1.13
USP39-218ENST00000493829 FIBPO43427 364 aa22.07■■□□□ 1.12
USP39-218ENST00000493829 ADORA2AP29274 412 aa22.07■■□□□ 1.12
USP39-218ENST00000493829 SREBF1P36956 1147 aa22.07■■□□□ 1.12
USP39-218ENST00000493829 MCTP2Q6DN12 878 aa22.07■■□□□ 1.12
USP39-218ENST00000493829 SAMD3Q8N6K7 520 aa22.07■■□□□ 1.12
USP39-218ENST00000493829 ZNF396Q96N95 335 aaPredicted RBP22.07■■□□□ 1.12
USP39-218ENST00000493829 ARHGAP39Q9C0H5 1083 aa22.07■■□□□ 1.12
USP39-218ENST00000493829 GDPD2Q9HCC8 539 aa22.07■■□□□ 1.12
USP39-218ENST00000493829 PXMP2Q9NR77 195 aa22.07■■□□□ 1.12
USP39-218ENST00000493829 MAP3K20Q9NYL2 800 aaKnown RBP22.07■■□□□ 1.12
USP39-218ENST00000493829 CCNT1O60563 726 aaKnown RBP22.07■■□□□ 1.12
USP39-218ENST00000493829 TDP2O95551 362 aa22.07■■□□□ 1.12
USP39-218ENST00000493829 MCM7P33993 719 aa22.07■■□□□ 1.12
USP39-218ENST00000493829 ZNF174Q15697 407 aa22.07■■□□□ 1.12
USP39-218ENST00000493829 MGAMO43451 1857 aa22.07■■□□□ 1.12
USP39-218ENST00000493829 ASTN1O14525 1302 aa22.06■■□□□ 1.12
USP39-218ENST00000493829 RPTORQ8N122 1335 aa22.06■■□□□ 1.12
USP39-218ENST00000493829 PCNTO95613 3336 aa22.06■■□□□ 1.12
USP39-218ENST00000493829 TNPO2O14787 897 aaKnown RBP22.06■■□□□ 1.12
USP39-218ENST00000493829 BAG4O95429 457 aaKnown RBP22.06■■□□□ 1.12
USP39-218ENST00000493829 PTPREP23469 700 aa22.06■■□□□ 1.12
USP39-218ENST00000493829 CTGFP29279 349 aa22.06■■□□□ 1.12
USP39-218ENST00000493829 KRT85P78386 507 aa22.06■■□□□ 1.12
USP39-218ENST00000493829 SOWAHBA6NEL2 793 aa22.05■■□□□ 1.12
USP39-218ENST00000493829 MYCLP12524 364 aaPredicted RBP22.05■■□□□ 1.12
USP39-218ENST00000493829 PGM5Q15124 567 aa22.05■■□□□ 1.12
USP39-218ENST00000493829 SF3A1Q15459 793 aaKnown RBP22.05■■□□□ 1.12
USP39-218ENST00000493829 DHX30Q7L2E3 1194 aaKnown RBP eCLIP22.05■■□□□ 1.12
USP39-218ENST00000493829 TEX2Q8IWB9 1127 aa22.05■■□□□ 1.12
USP39-218ENST00000493829 ZNF236Q9UL36 1845 aa22.05■■□□□ 1.12
USP39-218ENST00000493829 ZNFX1Q9P2E3 1918 aaKnown RBP22.05■■□□□ 1.12
USP39-218ENST00000493829 PLXNA1Q9UIW2 1896 aa22.05■■□□□ 1.12
USP39-218ENST00000493829 EDIL3O43854 480 aa22.04■■□□□ 1.12
USP39-218ENST00000493829 LACTBP83111 547 aaPredicted RBP22.04■■□□□ 1.12
USP39-218ENST00000493829 GRB14Q14449 540 aa22.04■■□□□ 1.12
USP39-218ENST00000493829 ANO1Q5XXA6 986 aa22.04■■□□□ 1.12
USP39-218ENST00000493829 FAM133AQ8N9E0 248 aa22.04■■□□□ 1.12
USP39-218ENST00000493829 NSUN6Q8TEA1 469 aaKnown RBP22.04■■□□□ 1.12
USP39-218ENST00000493829 UIMC1Q96RL1 719 aa22.04■■□□□ 1.12
USP39-218ENST00000493829 PDCD2LQ9BRP1 358 aa22.04■■□□□ 1.12
USP39-218ENST00000493829 TCHHQ07283 1943 aa22.04■■□□□ 1.12
USP39-218ENST00000493829 FRMPD4Q14CM0 1322 aa22.04■■□□□ 1.12
USP39-218ENST00000493829 LRRC37A2A6NM11 1700 aa22.04■■□□□ 1.12
USP39-218ENST00000493829 CEP350Q5VT06 3117 aa22.04■■□□□ 1.12
USP39-218ENST00000493829 DNAJC25-GNG10A0A024R161 153 aa22.04■■□□□ 1.12
USP39-218ENST00000493829 COBLO75128 1261 aa22.04■■□□□ 1.12
USP39-218ENST00000493829 ZNF76P36508 570 aa22.04■■□□□ 1.12
USP39-218ENST00000493829 TRAPPC10P48553 1259 aa22.04■■□□□ 1.12
USP39-218ENST00000493829 ALDH5A1P51649 535 aaPredicted RBP22.04■■□□□ 1.12
USP39-218ENST00000493829 TPRNQ4KMQ1 711 aa22.04■■□□□ 1.12
USP39-218ENST00000493829 CRYGNQ8WXF5 182 aa22.04■■□□□ 1.12
USP39-218ENST00000493829 BEGAINQ9BUH8 593 aa22.04■■□□□ 1.12
USP39-218ENST00000493829 CFHR5Q9BXR6 569 aa22.04■■□□□ 1.12
USP39-218ENST00000493829 MRVI1Q9Y6F6 885 aa22.04■■□□□ 1.12
USP39-218ENST00000493829 STRNO43815 780 aa22.03■■□□□ 1.12
USP39-218ENST00000493829 SLC37A4O43826 429 aa22.03■■□□□ 1.12
USP39-218ENST00000493829 PSMC4P43686 418 aa22.03■■□□□ 1.12
USP39-218ENST00000493829 FCGRTP55899 365 aa22.03■■□□□ 1.12
USP39-218ENST00000493829 SP3Q02447 781 aa22.03■■□□□ 1.12
USP39-218ENST00000493829 MAP2K1Q02750 393 aaPredicted RBP22.03■■□□□ 1.12
USP39-218ENST00000493829 DPP9Q86TI2 863 aa22.03■■□□□ 1.12
USP39-218ENST00000493829 TRIM47Q96LD4 638 aa22.03■■□□□ 1.12
USP39-218ENST00000493829 FGD4Q96M96 766 aa22.03■■□□□ 1.12
USP39-218ENST00000493829 GBP4Q96PP9 640 aa22.03■■□□□ 1.12
USP39-218ENST00000493829 RTEL1Q9NZ71 1219 aa22.03■■□□□ 1.12
USP39-218ENST00000493829 SLC15A5A6NIM6 579 aa22.02■■□□□ 1.12
USP39-218ENST00000493829 STK38Q15208 465 aa22.02■■□□□ 1.12
USP39-218ENST00000493829 POTEDQ86YR6 584 aa22.02■■□□□ 1.12
USP39-218ENST00000493829 ABRAQ8N0Z2 381 aa22.02■■□□□ 1.12
USP39-218ENST00000493829 CYP2W1Q8TAV3 490 aa22.02■■□□□ 1.12
USP39-218ENST00000493829 MAF1Q9H063 256 aa22.02■■□□□ 1.12
USP39-218ENST00000493829 EIF4ENIF1Q9NRA8 985 aaKnown RBP22.02■■□□□ 1.12
USP39-218ENST00000493829 SAGE1Q9NXZ1 904 aa22.02■■□□□ 1.12
USP39-218ENST00000493829 ADD3Q9UEY8 706 aaKnown RBP22.02■■□□□ 1.12
USP39-218ENST00000493829 DDX25Q9UHL0 483 aaKnown RBP22.02■■□□□ 1.12
USP39-218ENST00000493829 CFAP45Q9UL16 551 aa22.02■■□□□ 1.12
USP39-218ENST00000493829 FAM86B1E9PN63 330 aa22.01■■□□□ 1.11
USP39-218ENST00000493829 GPR25O00155 361 aa22.01■■□□□ 1.11
USP39-218ENST00000493829 FAM86B2P0C5J1 330 aa22.01■■□□□ 1.11
USP39-218ENST00000493829 CCND2P30279 289 aa22.01■■□□□ 1.11
USP39-218ENST00000493829 CAP1Q01518 475 aa22.01■■□□□ 1.11
USP39-218ENST00000493829 PRR16Q569H4 304 aa22.01■■□□□ 1.11
USP39-218ENST00000493829 DNAJC5GQ8N7S2 189 aa22.01■■□□□ 1.11
USP39-218ENST00000493829 DNERQ8NFT8 737 aa22.01■■□□□ 1.11
USP39-218ENST00000493829 CD99L2Q8TCZ2 262 aa22.01■■□□□ 1.11
USP39-218ENST00000493829 SPATA32Q96LK8 384 aa22.01■■□□□ 1.11
USP39-218ENST00000493829 POLR3EQ9NVU0 708 aa22.01■■□□□ 1.11
USP39-218ENST00000493829 NEMFO60524 1076 aa22.01■■□□□ 1.11
USP39-218ENST00000493829 NR3C2P08235 984 aa22.01■■□□□ 1.11
USP39-218ENST00000493829 USP11P51784 963 aa22.01■■□□□ 1.11
USP39-218ENST00000493829 KIF22Q14807 665 aa22.01■■□□□ 1.11
USP39-218ENST00000493829 MORN1Q5T089 497 aa22.01■■□□□ 1.11
USP39-218ENST00000493829 PCNX4Q63HM2 1172 aa22.01■■□□□ 1.11
USP39-218ENST00000493829 MARCKSP29966 332 aaPredicted RBP22■■□□□ 1.11
USP39-218ENST00000493829 NASPP49321 788 aaPredicted RBP22■■□□□ 1.11
USP39-218ENST00000493829 MRPS9P82933 396 aaKnown RBP22■■□□□ 1.11
USP39-218ENST00000493829 ZNF792Q3KQV3 632 aa22■■□□□ 1.11
USP39-218ENST00000493829 LEO1Q8WVC0 666 aaPredicted RBP22■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms