RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 SLIT1O75093 1534 aa12.15□□□□□ -0.46
HDAC6-228ENST00000486227 KIF20BQ96Q89 1820 aa12.15□□□□□ -0.47
HDAC6-228ENST00000486227 SORBS3O60504 671 aa12.15□□□□□ -0.47
HDAC6-228ENST00000486227 INTS5Q6P9B9 1019 aaKnown RBP12.15□□□□□ -0.47
HDAC6-228ENST00000486227 RPGRIP1Q96KN7 1286 aa12.15□□□□□ -0.47
HDAC6-228ENST00000486227 CUEDC2Q9H467 287 aa12.15□□□□□ -0.47
HDAC6-228ENST00000486227 ARMCX3Q9UH62 379 aaPredicted RBP12.15□□□□□ -0.47
HDAC6-228ENST00000486227 ARHGAP23Q9P227 1491 aa12.15□□□□□ -0.47
HDAC6-228ENST00000486227 PLEKHG2Q9H7P9 1386 aa12.14□□□□□ -0.47
HDAC6-228ENST00000486227 A0A1B0GUA9 196 aa12.14□□□□□ -0.47
HDAC6-228ENST00000486227 ATP2C2O75185 946 aa12.14□□□□□ -0.47
HDAC6-228ENST00000486227 GH2P01242 217 aa12.14□□□□□ -0.47
HDAC6-228ENST00000486227 OSBPP22059 807 aa12.14□□□□□ -0.47
HDAC6-228ENST00000486227 PPFIA1Q13136 1202 aa12.14□□□□□ -0.47
HDAC6-228ENST00000486227 R3HDM1Q15032 1099 aaKnown RBP12.14□□□□□ -0.47
HDAC6-228ENST00000486227 PFKFB3Q16875 520 aaPredicted RBP12.14□□□□□ -0.47
HDAC6-228ENST00000486227 SFMBT2Q5VUG0 894 aa12.14□□□□□ -0.47
HDAC6-228ENST00000486227 TMED8Q6PL24 325 aaPredicted RBP12.14□□□□□ -0.47
HDAC6-228ENST00000486227 FMNL3Q8IVF7 1028 aa12.14□□□□□ -0.47
HDAC6-228ENST00000486227 KCNF1Q9H3M0 494 aa12.14□□□□□ -0.47
HDAC6-228ENST00000486227 SAMSN1Q9NSI8 373 aaKnown RBP12.14□□□□□ -0.47
HDAC6-228ENST00000486227 RNF181Q9P0P0 153 aa12.14□□□□□ -0.47
HDAC6-228ENST00000486227 CEP83Q9Y592 693 aa12.14□□□□□ -0.47
HDAC6-228ENST00000486227 MYO3BQ8WXR4 1341 aa12.14□□□□□ -0.47
HDAC6-228ENST00000486227 FAM170AA1A519 330 aa12.14□□□□□ -0.47
HDAC6-228ENST00000486227 XRCC5P13010 732 aaKnown RBP12.14□□□□□ -0.47
HDAC6-228ENST00000486227 ATP1A3P13637 1013 aa12.14□□□□□ -0.47
HDAC6-228ENST00000486227 SNAP25P60880 206 aa12.14□□□□□ -0.47
HDAC6-228ENST00000486227 DPP9Q86TI2 863 aa12.14□□□□□ -0.47
HDAC6-228ENST00000486227 CDAN1Q8IWY9 1227 aa12.14□□□□□ -0.47
HDAC6-228ENST00000486227 FAM178BQ8IXR5 827 aa12.14□□□□□ -0.47
HDAC6-228ENST00000486227 ZNF512BQ96KM6 892 aaPredicted RBP12.14□□□□□ -0.47
HDAC6-228ENST00000486227 KCNG1Q9UIX4 513 aa12.14□□□□□ -0.47
HDAC6-228ENST00000486227 LRRC41Q15345 812 aa12.14□□□□□ -0.47
HDAC6-228ENST00000486227 SRGAP1Q7Z6B7 1085 aa12.14□□□□□ -0.47
HDAC6-228ENST00000486227 MSANTD4Q8NCY6 345 aa12.14□□□□□ -0.47
HDAC6-228ENST00000486227 PAGE5Q96GU1 130 aa12.14□□□□□ -0.47
HDAC6-228ENST00000486227 LSM14BQ9BX40 385 aaKnown RBP12.14□□□□□ -0.47
HDAC6-228ENST00000486227 MAGEF1Q9HAY2 307 aa12.14□□□□□ -0.47
HDAC6-228ENST00000486227 DCCP43146 1447 aa12.14□□□□□ -0.47
HDAC6-228ENST00000486227 KIF28PB7ZC32 967 aa12.13□□□□□ -0.47
HDAC6-228ENST00000486227 GCFC2P16383 781 aaKnown RBP12.13□□□□□ -0.47
HDAC6-228ENST00000486227 GUCY1A2P33402 732 aa12.13□□□□□ -0.47
HDAC6-228ENST00000486227 CACNB1Q02641 598 aaPredicted RBP12.13□□□□□ -0.47
HDAC6-228ENST00000486227 ARHGAP44Q17R89 818 aa12.13□□□□□ -0.47
HDAC6-228ENST00000486227 LRCH2Q5VUJ6 765 aa12.13□□□□□ -0.47
HDAC6-228ENST00000486227 RESP18Q5W5W9 173 aa12.13□□□□□ -0.47
HDAC6-228ENST00000486227 SLC10A4Q96EP9 437 aa12.13□□□□□ -0.47
HDAC6-228ENST00000486227 NOX5Q96PH1 765 aa12.13□□□□□ -0.47
HDAC6-228ENST00000486227 TEKT3Q9BXF9 490 aa12.13□□□□□ -0.47
HDAC6-228ENST00000486227 IFIH1Q9BYX4 1025 aaKnown RBP12.13□□□□□ -0.47
HDAC6-228ENST00000486227 COL4A3BPQ9Y5P4 624 aa12.13□□□□□ -0.47
HDAC6-228ENST00000486227 PNMA6FA0A0J9YX94 578 aa12.13□□□□□ -0.47
HDAC6-228ENST00000486227 hCG_1984214I3L0E3 225 aa12.13□□□□□ -0.47
HDAC6-228ENST00000486227 NT5C2P49902 561 aa12.13□□□□□ -0.47
HDAC6-228ENST00000486227 ADAM9Q13443 819 aa12.13□□□□□ -0.47
HDAC6-228ENST00000486227 CDC37Q16543 378 aaPredicted RBP12.13□□□□□ -0.47
HDAC6-228ENST00000486227 SYDE2Q5VT97 1194 aa12.13□□□□□ -0.47
HDAC6-228ENST00000486227 ZNF713Q8N859 430 aaPredicted RBP12.13□□□□□ -0.47
HDAC6-228ENST00000486227 TUBGCP2Q9BSJ2 902 aa12.13□□□□□ -0.47
HDAC6-228ENST00000486227 SALL3Q9BXA9 1300 aa12.13□□□□□ -0.47
HDAC6-228ENST00000486227 GNA14O95837 355 aa12.13□□□□□ -0.47
HDAC6-228ENST00000486227 PLCG1P19174 1290 aa12.13□□□□□ -0.47
HDAC6-228ENST00000486227 CASP1P29466 404 aa12.13□□□□□ -0.47
HDAC6-228ENST00000486227 XKR9Q5GH70 373 aa12.13□□□□□ -0.47
HDAC6-228ENST00000486227 CCDC50Q8IVM0 306 aa12.13□□□□□ -0.47
HDAC6-228ENST00000486227 FMR1NBQ8N0W7 255 aaPredicted RBP12.13□□□□□ -0.47
HDAC6-228ENST00000486227 ATP6V0A2Q9Y487 856 aa12.13□□□□□ -0.47
HDAC6-228ENST00000486227 MYO1CO00159 1063 aa12.13□□□□□ -0.47
HDAC6-228ENST00000486227 CASP14P31944 242 aa12.13□□□□□ -0.47
HDAC6-228ENST00000486227 STAT2P52630 851 aa12.13□□□□□ -0.47
HDAC6-228ENST00000486227 RCAN1P53805 252 aa12.13□□□□□ -0.47
HDAC6-228ENST00000486227 IRX5P78411 483 aaPredicted RBP12.13□□□□□ -0.47
HDAC6-228ENST00000486227 PLCB3Q01970 1234 aa12.13□□□□□ -0.47
HDAC6-228ENST00000486227 AOC3Q16853 763 aa12.13□□□□□ -0.47
HDAC6-228ENST00000486227 ENOX1Q8TC92 643 aaKnown RBP12.13□□□□□ -0.47
HDAC6-228ENST00000486227 IGDCC4Q8TDY8 1250 aa12.13□□□□□ -0.47
HDAC6-228ENST00000486227 GJA10Q969M2 543 aa12.13□□□□□ -0.47
HDAC6-228ENST00000486227 CNOT6LQ96LI5 555 aaKnown RBP12.13□□□□□ -0.47
HDAC6-228ENST00000486227 EPB41L4AQ9HCS5 686 aaPredicted RBP12.13□□□□□ -0.47
HDAC6-228ENST00000486227 CDC23Q9UJX2 597 aa12.13□□□□□ -0.47
HDAC6-228ENST00000486227 RABGAP1Q9Y3P9 1069 aa12.13□□□□□ -0.47
HDAC6-228ENST00000486227 ECE2O60344 883 aa12.12□□□□□ -0.47
HDAC6-228ENST00000486227 ANTXR2P58335 489 aa12.12□□□□□ -0.47
HDAC6-228ENST00000486227 TNNC1P63316 161 aa12.12□□□□□ -0.47
HDAC6-228ENST00000486227 SP8Q8IXZ3 490 aa12.12□□□□□ -0.47
HDAC6-228ENST00000486227 TBC1D16Q8TBP0 767 aa12.12□□□□□ -0.47
HDAC6-228ENST00000486227 LARSQ9P2J5 1176 aaKnown RBP12.12□□□□□ -0.47
HDAC6-228ENST00000486227 ORC4O43929 436 aa12.12□□□□□ -0.47
HDAC6-228ENST00000486227 FAM102BQ5T8I3 360 aa12.12□□□□□ -0.47
HDAC6-228ENST00000486227 C12orf60Q5U649 245 aa12.12□□□□□ -0.47
HDAC6-228ENST00000486227 ARL6IP4Q66PJ3 421 aaKnown RBP12.12□□□□□ -0.47
HDAC6-228ENST00000486227 TMEM179Q6ZVK1 233 aa12.12□□□□□ -0.47
HDAC6-228ENST00000486227 OTUD6AQ7L8S5 288 aa12.12□□□□□ -0.47
HDAC6-228ENST00000486227 ANKS4BQ8N8V4 417 aa12.12□□□□□ -0.47
HDAC6-228ENST00000486227 RASAL2Q9UJF2 1139 aa12.12□□□□□ -0.47
HDAC6-228ENST00000486227 MEIS1O00470 390 aa12.12□□□□□ -0.47
HDAC6-228ENST00000486227 HOXA13P31271 388 aaPredicted RBP12.12□□□□□ -0.47
HDAC6-228ENST00000486227 ARID5BQ14865 1188 aa12.12□□□□□ -0.47
HDAC6-228ENST00000486227 SEPT2Q15019 361 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms