RNA–Protein interactions for RNA: ENST00000450940.5

USP40-207, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 670 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-207ENST00000450940 RAG1P15918 1043 aa22.54■■□□□ 1.2
USP40-207ENST00000450940 TRAF1Q13077 416 aa22.54■■□□□ 1.2
USP40-207ENST00000450940 CREB3L3Q68CJ9 461 aa22.54■■□□□ 1.2
USP40-207ENST00000450940 CATIPQ7Z7H3 387 aa22.54■■□□□ 1.2
USP40-207ENST00000450940 PCDHA1Q9Y5I3 950 aa22.54■■□□□ 1.2
USP40-207ENST00000450940 TIMP1P01033 207 aa22.53■■□□□ 1.2
USP40-207ENST00000450940 MCM5P33992 734 aa22.53■■□□□ 1.2
USP40-207ENST00000450940 SHHQ15465 462 aa22.53■■□□□ 1.2
USP40-207ENST00000450940 TMTC2Q8N394 836 aa22.53■■□□□ 1.2
USP40-207ENST00000450940 PIGSQ96S52 555 aa22.53■■□□□ 1.2
USP40-207ENST00000450940 RMDN3Q96TC7 470 aa22.53■■□□□ 1.2
USP40-207ENST00000450940 ANO2Q9NQ90 1003 aa22.53■■□□□ 1.2
USP40-207ENST00000450940 PRC1O43663 620 aa22.52■■□□□ 1.2
USP40-207ENST00000450940 DDAH1O94760 285 aa22.52■■□□□ 1.2
USP40-207ENST00000450940 SMARCA1P28370 1054 aa22.52■■□□□ 1.2
USP40-207ENST00000450940 CPT1AP50416 773 aa22.52■■□□□ 1.2
USP40-207ENST00000450940 ITGA7Q13683 1181 aa22.52■■□□□ 1.2
USP40-207ENST00000450940 COL9A3Q14050 684 aaPredicted RBP22.52■■□□□ 1.2
USP40-207ENST00000450940 PPP2R5BQ15173 497 aa22.52■■□□□ 1.2
USP40-207ENST00000450940 C9orf50Q5SZB4 431 aa22.52■■□□□ 1.2
USP40-207ENST00000450940 CCDC62Q6P9F0 684 aa22.52■■□□□ 1.2
USP40-207ENST00000450940 TMEM87BQ96K49 555 aa22.52■■□□□ 1.2
USP40-207ENST00000450940 GPHNQ9NQX3 736 aaPredicted RBP22.52■■□□□ 1.2
USP40-207ENST00000450940 POLR3EQ9NVU0 708 aa22.52■■□□□ 1.2
USP40-207ENST00000450940 SCN10AQ9Y5Y9 1956 aa22.51■■□□□ 1.19
USP40-207ENST00000450940 PNMA6FA0A0J9YX94 578 aa22.51■■□□□ 1.19
USP40-207ENST00000450940 A6NJR5 290 aa22.51■■□□□ 1.19
USP40-207ENST00000450940 TLR3O15455 904 aaKnown RBP22.51■■□□□ 1.19
USP40-207ENST00000450940 CFBP00751 764 aa22.51■■□□□ 1.19
USP40-207ENST00000450940 TXNP10599 105 aaKnown RBP22.51■■□□□ 1.19
USP40-207ENST00000450940 LIFRP42702 1097 aa22.51■■□□□ 1.19
USP40-207ENST00000450940 PURAQ00577 322 aaKnown RBP22.51■■□□□ 1.19
USP40-207ENST00000450940 STXBP2Q15833 593 aa22.51■■□□□ 1.19
USP40-207ENST00000450940 CASC1Q6TDU7 716 aa22.51■■□□□ 1.19
USP40-207ENST00000450940 ZNF654Q8IZM8 581 aa22.51■■□□□ 1.19
USP40-207ENST00000450940 SH2B2O14492 632 aaPredicted RBP22.5■■□□□ 1.19
USP40-207ENST00000450940 ARIH2O95376 493 aa22.5■■□□□ 1.19
USP40-207ENST00000450940 EPHB4P54760 987 aa22.5■■□□□ 1.19
USP40-207ENST00000450940 FPGSQ05932 587 aa22.5■■□□□ 1.19
USP40-207ENST00000450940 TTLL4Q14679 1199 aa22.5■■□□□ 1.19
USP40-207ENST00000450940 MFSD5Q6N075 450 aa22.5■■□□□ 1.19
USP40-207ENST00000450940 OR6J1Q8NGC5 347 aa22.5■■□□□ 1.19
USP40-207ENST00000450940 SPZ1Q9BXG8 430 aa22.5■■□□□ 1.19
USP40-207ENST00000450940 PXMP2Q9NR77 195 aa22.5■■□□□ 1.19
USP40-207ENST00000450940 KPNA6O60684 536 aa22.49■■□□□ 1.19
USP40-207ENST00000450940 EIF3JO75822 258 aaKnown RBP22.49■■□□□ 1.19
USP40-207ENST00000450940 NR3C2P08235 984 aa22.49■■□□□ 1.19
USP40-207ENST00000450940 KIF5BP33176 963 aa22.49■■□□□ 1.19
USP40-207ENST00000450940 ARHGEF16Q5VV41 709 aa22.49■■□□□ 1.19
USP40-207ENST00000450940 HOMER1Q86YM7 354 aa22.49■■□□□ 1.19
USP40-207ENST00000450940 COPS5Q92905 334 aa22.49■■□□□ 1.19
USP40-207ENST00000450940 CDC45O75419 566 aa22.48■■□□□ 1.19
USP40-207ENST00000450940 TSGA10IPQ3SY00 556 aa22.48■■□□□ 1.19
USP40-207ENST00000450940 BRDTQ58F21 947 aaPredicted RBP22.48■■□□□ 1.19
USP40-207ENST00000450940 FAM109BQ6ICB4 259 aaPredicted RBP22.48■■□□□ 1.19
USP40-207ENST00000450940 CTCFLQ8NI51 663 aaPredicted RBP22.48■■□□□ 1.19
USP40-207ENST00000450940 CCDC136Q96JN2 1154 aa22.48■■□□□ 1.19
USP40-207ENST00000450940 LZTS2Q9BRK4 669 aa22.48■■□□□ 1.19
USP40-207ENST00000450940 EIF2AK2P19525 551 aaKnown RBP22.47■■□□□ 1.19
USP40-207ENST00000450940 PSMC6P62333 389 aa22.47■■□□□ 1.19
USP40-207ENST00000450940 RNF20Q5VTR2 975 aa22.47■■□□□ 1.19
USP40-207ENST00000450940 PDCD2LQ9BRP1 358 aa22.47■■□□□ 1.19
USP40-207ENST00000450940 MTG1Q9BT17 334 aaPredicted RBP22.47■■□□□ 1.19
USP40-207ENST00000450940 MYH7BA7E2Y1 1941 aa22.47■■□□□ 1.19
USP40-207ENST00000450940 CALM1P0DP23 149 aa22.46■■□□□ 1.19
USP40-207ENST00000450940 CALM2P0DP24 149 aa22.46■■□□□ 1.19
USP40-207ENST00000450940 CALM3P0DP25 149 aa22.46■■□□□ 1.19
USP40-207ENST00000450940 GNAQP50148 359 aa22.46■■□□□ 1.19
USP40-207ENST00000450940 ARHGAP1Q07960 439 aa22.46■■□□□ 1.19
USP40-207ENST00000450940 SEPT14Q6ZU15 432 aa22.46■■□□□ 1.19
USP40-207ENST00000450940 VSIG10LQ86VR7 867 aa22.46■■□□□ 1.19
USP40-207ENST00000450940 SGMS1Q86VZ5 419 aa22.46■■□□□ 1.19
USP40-207ENST00000450940 DEFB123Q8N688 67 aa22.46■■□□□ 1.19
USP40-207ENST00000450940 MYL10Q9BUA6 226 aa22.46■■□□□ 1.19
USP40-207ENST00000450940 ALDH8A1Q9H2A2 487 aaPredicted RBP22.46■■□□□ 1.19
USP40-207ENST00000450940 DDX41Q9UJV9 622 aaKnown RBP22.46■■□□□ 1.19
USP40-207ENST00000450940 CCDC69A6NI79 296 aa22.45■■□□□ 1.18
USP40-207ENST00000450940 GCOM1H8Y6P7 765 aaPredicted RBP22.45■■□□□ 1.18
USP40-207ENST00000450940 MYL3P08590 195 aa22.45■■□□□ 1.18
USP40-207ENST00000450940 POLR2MP0CAP2 368 aa22.45■■□□□ 1.18
USP40-207ENST00000450940 HOXA13P31271 388 aaPredicted RBP22.45■■□□□ 1.18
USP40-207ENST00000450940 LY6KQ17RY6 165 aa22.45■■□□□ 1.18
USP40-207ENST00000450940 EMID1Q96A84 441 aaPredicted RBP22.45■■□□□ 1.18
USP40-207ENST00000450940 TRPV6Q9H1D0 765 aa22.45■■□□□ 1.18
USP40-207ENST00000450940 B4GALT4O60513 344 aa22.44■■□□□ 1.18
USP40-207ENST00000450940 RGS20O76081 388 aa22.44■■□□□ 1.18
USP40-207ENST00000450940 GH1P01241 217 aa22.44■■□□□ 1.18
USP40-207ENST00000450940 EXOSC10Q01780 885 aaKnown RBP22.44■■□□□ 1.18
USP40-207ENST00000450940 PPIGQ13427 754 aaKnown RBP eCLIP22.44■■□□□ 1.181e-6■■□□□ 11.7
USP40-207ENST00000450940 PGM5Q15124 567 aa22.44■■□□□ 1.18
USP40-207ENST00000450940 NFXL1Q6ZNB6 911 aa22.44■■□□□ 1.18
USP40-207ENST00000450940 Q7L0L9 218 aa22.44■■□□□ 1.18
USP40-207ENST00000450940 C16orf59Q7L2K0 433 aa22.44■■□□□ 1.18
USP40-207ENST00000450940 TMEM199Q8N511 208 aa22.44■■□□□ 1.18
USP40-207ENST00000450940 SRBD1Q8N5C6 995 aaKnown RBP22.44■■□□□ 1.18
USP40-207ENST00000450940 RRP36Q96EU6 259 aaKnown RBP22.44■■□□□ 1.18
USP40-207ENST00000450940 NEK1Q96PY6 1258 aa22.44■■□□□ 1.18
USP40-207ENST00000450940 MTMR10Q9NXD2 777 aa22.44■■□□□ 1.18
USP40-207ENST00000450940 FRMPD4Q14CM0 1322 aa22.43■■□□□ 1.18
USP40-207ENST00000450940 SMAD3P84022 425 aaKnown RBP22.43■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 79 ms