RNA–Protein interactions for RNA: ENST00000409588.1

NIF3L1-205, Transcript of NGG1 interacting factor 3 like 1, humanhuman

TSL 1 (best) BASIC

Gene NIF3L1, Length 1,269 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIF3L1-205ENST00000409588 SLC43A3Q8NBI5 491 aa16.9■□□□□ 0.3
NIF3L1-205ENST00000409588 IGDCC4Q8TDY8 1250 aa16.9■□□□□ 0.3
NIF3L1-205ENST00000409588 RIOX1Q9H6W3 641 aa16.9■□□□□ 0.3
NIF3L1-205ENST00000409588 KIF5BP33176 963 aa16.89■□□□□ 0.29
NIF3L1-205ENST00000409588 MCM5P33992 734 aa16.89■□□□□ 0.29
NIF3L1-205ENST00000409588 TTLL4Q14679 1199 aa16.89■□□□□ 0.29
NIF3L1-205ENST00000409588 GRM4Q14833 912 aa16.89■□□□□ 0.29
NIF3L1-205ENST00000409588 STXBP2Q15833 593 aa16.89■□□□□ 0.29
NIF3L1-205ENST00000409588 TMEM67Q5HYA8 995 aa16.89■□□□□ 0.29
NIF3L1-205ENST00000409588 RNF20Q5VTR2 975 aa16.89■□□□□ 0.29
NIF3L1-205ENST00000409588 FAM109BQ6ICB4 259 aaPredicted RBP16.89■□□□□ 0.29
NIF3L1-205ENST00000409588 SH3RF1Q7Z6J0 888 aa16.89■□□□□ 0.29
NIF3L1-205ENST00000409588 STAG2Q8N3U4 1231 aa16.89■□□□□ 0.29
NIF3L1-205ENST00000409588 TMEM87BQ96K49 555 aa16.89■□□□□ 0.29
NIF3L1-205ENST00000409588 PURBQ96QR8 312 aaKnown RBP16.89■□□□□ 0.29
NIF3L1-205ENST00000409588 LZTS2Q9BRK4 669 aa16.89■□□□□ 0.29
NIF3L1-205ENST00000409588 ESYT1Q9BSJ8 1104 aa16.89■□□□□ 0.29
NIF3L1-205ENST00000409588 CPVLQ9H3G5 476 aa16.89■□□□□ 0.29
NIF3L1-205ENST00000409588 GPHNQ9NQX3 736 aaPredicted RBP16.89■□□□□ 0.29
NIF3L1-205ENST00000409588 PCDHA1Q9Y5I3 950 aa16.89■□□□□ 0.29
NIF3L1-205ENST00000409588 SOX1O00570 391 aaPredicted RBP16.88■□□□□ 0.29
NIF3L1-205ENST00000409588 EIF3JO75822 258 aaKnown RBP16.88■□□□□ 0.29
NIF3L1-205ENST00000409588 LIFRP42702 1097 aa16.88■□□□□ 0.29
NIF3L1-205ENST00000409588 GNAQP50148 359 aa16.88■□□□□ 0.29
NIF3L1-205ENST00000409588 ITGA7Q13683 1181 aa16.88■□□□□ 0.29
NIF3L1-205ENST00000409588 PPP2R5BQ15173 497 aa16.88■□□□□ 0.29
NIF3L1-205ENST00000409588 MB21D2Q8IYB1 491 aaPredicted RBP16.88■□□□□ 0.29
NIF3L1-205ENST00000409588 SYTL5Q8TDW5 730 aaPredicted RBP16.88■□□□□ 0.29
NIF3L1-205ENST00000409588 RMDN3Q96TC7 470 aa16.88■□□□□ 0.29
NIF3L1-205ENST00000409588 LSG1Q9H089 658 aaKnown RBP16.88■□□□□ 0.29
NIF3L1-205ENST00000409588 MCM3APO60318 1980 aa16.88■□□□□ 0.29
NIF3L1-205ENST00000409588 PNMA6FA0A0J9YX94 578 aa16.87■□□□□ 0.29
NIF3L1-205ENST00000409588 A6NJR5 290 aa16.87■□□□□ 0.29
NIF3L1-205ENST00000409588 SUPT20HL2P0C7V6 817 aa16.87■□□□□ 0.29
NIF3L1-205ENST00000409588 CALM1P0DP23 149 aa16.87■□□□□ 0.29
NIF3L1-205ENST00000409588 CALM2P0DP24 149 aa16.87■□□□□ 0.29
NIF3L1-205ENST00000409588 CALM3P0DP25 149 aa16.87■□□□□ 0.29
NIF3L1-205ENST00000409588 TXNP10599 105 aaKnown RBP16.87■□□□□ 0.29
NIF3L1-205ENST00000409588 HSD17B4P51659 736 aa16.87■□□□□ 0.29
NIF3L1-205ENST00000409588 BEX3Q00994 111 aa16.87■□□□□ 0.29
NIF3L1-205ENST00000409588 FPGSQ05932 587 aa16.87■□□□□ 0.29
NIF3L1-205ENST00000409588 NECTIN1Q15223 517 aa16.87■□□□□ 0.29
NIF3L1-205ENST00000409588 MFSD5Q6N075 450 aa16.87■□□□□ 0.29
NIF3L1-205ENST00000409588 KCNV1Q6PIU1 500 aa16.87■□□□□ 0.29
NIF3L1-205ENST00000409588 CXCL17Q6UXB2 119 aa16.87■□□□□ 0.29
NIF3L1-205ENST00000409588 FAM126BQ8IXS8 530 aa16.87■□□□□ 0.29
NIF3L1-205ENST00000409588 TMEM199Q8N511 208 aa16.87■□□□□ 0.29
NIF3L1-205ENST00000409588 TBX21Q9UL17 535 aa16.87■□□□□ 0.29
NIF3L1-205ENST00000409588 SZT2Q5T011 3432 aa16.87■□□□□ 0.29
NIF3L1-205ENST00000409588 LAMA3Q16787 3333 aa16.86■□□□□ 0.29
NIF3L1-205ENST00000409588 DDAH1O94760 285 aa16.86■□□□□ 0.29
NIF3L1-205ENST00000409588 CD4P01730 458 aa16.86■□□□□ 0.29
NIF3L1-205ENST00000409588 ARHGEF16Q5VV41 709 aa16.86■□□□□ 0.29
NIF3L1-205ENST00000409588 STOX1Q6ZVD7 989 aa16.86■□□□□ 0.29
NIF3L1-205ENST00000409588 CTCFLQ8NI51 663 aaPredicted RBP16.86■□□□□ 0.29
NIF3L1-205ENST00000409588 LRCH3Q96II8 777 aa16.86■□□□□ 0.29
NIF3L1-205ENST00000409588 TAAR1Q96RJ0 339 aa16.86■□□□□ 0.29
NIF3L1-205ENST00000409588 POTEMA6NI47 508 aa16.85■□□□□ 0.29
NIF3L1-205ENST00000409588 CFBP00751 764 aa16.85■□□□□ 0.29
NIF3L1-205ENST00000409588 PTPN11Q06124 597 aaPredicted RBP16.85■□□□□ 0.29
NIF3L1-205ENST00000409588 PPIGQ13427 754 aaKnown RBP eCLIP16.85■□□□□ 0.291e-6■■■■□ 25.5
NIF3L1-205ENST00000409588 SHHQ15465 462 aa16.85■□□□□ 0.29
NIF3L1-205ENST00000409588 OR6J1Q8NGC5 347 aa16.85■□□□□ 0.29
NIF3L1-205ENST00000409588 TBC1D5Q92609 795 aa16.85■□□□□ 0.29
NIF3L1-205ENST00000409588 MTG1Q9BT17 334 aaPredicted RBP16.85■□□□□ 0.29
NIF3L1-205ENST00000409588 ANO2Q9NQ90 1003 aa16.85■□□□□ 0.29
NIF3L1-205ENST00000409588 CCDC69A6NI79 296 aa16.84■□□□□ 0.29
NIF3L1-205ENST00000409588 GCOM1H8Y6P7 765 aaPredicted RBP16.84■□□□□ 0.29
NIF3L1-205ENST00000409588 SLC27A2O14975 620 aa16.84■□□□□ 0.29
NIF3L1-205ENST00000409588 PRC1O43663 620 aa16.84■□□□□ 0.29
NIF3L1-205ENST00000409588 NR3C2P08235 984 aa16.84■□□□□ 0.29
NIF3L1-205ENST00000409588 POLR2MP0CAP2 368 aa16.84■□□□□ 0.29
NIF3L1-205ENST00000409588 TGFB3P10600 412 aa16.84■□□□□ 0.29
NIF3L1-205ENST00000409588 ITGB8P26012 769 aa16.84■□□□□ 0.29
NIF3L1-205ENST00000409588 ANTXR2P58335 489 aa16.84■□□□□ 0.29
NIF3L1-205ENST00000409588 IRX5P78411 483 aaPredicted RBP16.84■□□□□ 0.29
NIF3L1-205ENST00000409588 SMAD3P84022 425 aaKnown RBP16.84■□□□□ 0.29
NIF3L1-205ENST00000409588 PURAQ00577 322 aaKnown RBP16.84■□□□□ 0.29
NIF3L1-205ENST00000409588 TSGA10IPQ3SY00 556 aa16.84■□□□□ 0.29
NIF3L1-205ENST00000409588 CREB3L3Q68CJ9 461 aa16.84■□□□□ 0.29
NIF3L1-205ENST00000409588 CCDC62Q6P9F0 684 aa16.84■□□□□ 0.29
NIF3L1-205ENST00000409588 CHST3Q7LGC8 479 aa16.84■□□□□ 0.29
NIF3L1-205ENST00000409588 DEFB123Q8N688 67 aa16.84■□□□□ 0.29
NIF3L1-205ENST00000409588 SPZ1Q9BXG8 430 aa16.84■□□□□ 0.29
NIF3L1-205ENST00000409588 LY9Q9HBG7 655 aa16.84■□□□□ 0.29
NIF3L1-205ENST00000409588 PXMP2Q9NR77 195 aa16.84■□□□□ 0.29
NIF3L1-205ENST00000409588 TRPC6Q9Y210 931 aa16.84■□□□□ 0.29
NIF3L1-205ENST00000409588 STAM2O75886 525 aa16.83■□□□□ 0.28
NIF3L1-205ENST00000409588 GH1P01241 217 aa16.83■□□□□ 0.28
NIF3L1-205ENST00000409588 KRT32Q14532 448 aa16.83■□□□□ 0.28
NIF3L1-205ENST00000409588 NFRKBQ6P4R8 1299 aa16.83■□□□□ 0.28
NIF3L1-205ENST00000409588 NFXL1Q6ZNB6 911 aa16.83■□□□□ 0.28
NIF3L1-205ENST00000409588 RASEFQ8IZ41 740 aa16.83■□□□□ 0.28
NIF3L1-205ENST00000409588 ZNF654Q8IZM8 581 aa16.83■□□□□ 0.28
NIF3L1-205ENST00000409588 EMID1Q96A84 441 aaPredicted RBP16.83■□□□□ 0.28
NIF3L1-205ENST00000409588 RRP36Q96EU6 259 aaKnown RBP16.83■□□□□ 0.28
NIF3L1-205ENST00000409588 CCDC136Q96JN2 1154 aa16.83■□□□□ 0.28
NIF3L1-205ENST00000409588 PIGSQ96S52 555 aa16.83■□□□□ 0.28
NIF3L1-205ENST00000409588 DDX49Q9Y6V7 483 aaKnown RBP16.83■□□□□ 0.28
NIF3L1-205ENST00000409588 GRIN2DO15399 1336 aa16.82■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms