RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 ABCB6Q9NP58 842 aa20.45■□□□□ 0.86
USP48-204ENST00000400301 PNMA6FA0A0J9YX94 578 aa20.45■□□□□ 0.86
USP48-204ENST00000400301 PAK2Q13177 524 aa20.45■□□□□ 0.86
USP48-204ENST00000400301 POTEDQ86YR6 584 aa20.45■□□□□ 0.86
USP48-204ENST00000400301 PLVAPQ9BX97 442 aa20.45■□□□□ 0.86
USP48-204ENST00000400301 GCOM1H8Y6P7 765 aaPredicted RBP20.44■□□□□ 0.86
USP48-204ENST00000400301 GAS7O60861 476 aa20.44■□□□□ 0.86
USP48-204ENST00000400301 MYZAPP0CAP1 466 aa20.44■□□□□ 0.86
USP48-204ENST00000400301 NR2F2P24468 414 aa20.44■□□□□ 0.86
USP48-204ENST00000400301 SEPT7Q16181 437 aaKnown RBP20.44■□□□□ 0.86
USP48-204ENST00000400301 RAD9BQ6WBX8 426 aa20.44■□□□□ 0.86
USP48-204ENST00000400301 PEX26Q7Z412 305 aa20.44■□□□□ 0.86
USP48-204ENST00000400301 CPXCR1Q8N123 301 aa20.44■□□□□ 0.86
USP48-204ENST00000400301 LIMA1Q9UHB6 759 aaKnown RBP20.44■□□□□ 0.86
USP48-204ENST00000400301 COL4A3BPQ9Y5P4 624 aa20.44■□□□□ 0.86
USP48-204ENST00000400301 JCADQ9P266 1359 aa20.44■□□□□ 0.86
USP48-204ENST00000400301 SPICE1Q8N0Z3 855 aa20.44■□□□□ 0.86
USP48-204ENST00000400301 RASAL2Q9UJF2 1139 aa20.44■□□□□ 0.86
USP48-204ENST00000400301 SP4Q02446 784 aa20.44■□□□□ 0.86
USP48-204ENST00000400301 CCDC26Q8TAB7 109 aa20.44■□□□□ 0.86
USP48-204ENST00000400301 GJA10Q969M2 543 aa20.44■□□□□ 0.86
USP48-204ENST00000400301 LTN1O94822 1766 aa20.44■□□□□ 0.86
USP48-204ENST00000400301 ABCB5Q2M3G0 1257 aa20.44■□□□□ 0.86
USP48-204ENST00000400301 UNC13DQ70J99 1090 aa20.44■□□□□ 0.86
USP48-204ENST00000400301 ARFGAP2Q8N6H7 521 aa20.44■□□□□ 0.86
USP48-204ENST00000400301 UBLCP1Q8WVY7 318 aaPredicted RBP20.44■□□□□ 0.86
USP48-204ENST00000400301 DDX12PQ92771 950 aa20.44■□□□□ 0.86
USP48-204ENST00000400301 CXCR5P32302 372 aa20.43■□□□□ 0.86
USP48-204ENST00000400301 GPSM2P81274 684 aa20.43■□□□□ 0.86
USP48-204ENST00000400301 NLGN1Q8N2Q7 840 aa20.43■□□□□ 0.86
USP48-204ENST00000400301 KANSL2Q9H9L4 492 aa20.43■□□□□ 0.86
USP48-204ENST00000400301 TLDC2A0PJX2 215 aa20.43■□□□□ 0.86
USP48-204ENST00000400301 FMNL3Q8IVF7 1028 aa20.43■□□□□ 0.86
USP48-204ENST00000400301 CCSER1Q9C0I3 900 aa20.43■□□□□ 0.86
USP48-204ENST00000400301 BCL9O00512 1426 aa20.43■□□□□ 0.86
USP48-204ENST00000400301 KCNK3O14649 394 aa20.43■□□□□ 0.86
USP48-204ENST00000400301 CYP2J2P51589 502 aa20.43■□□□□ 0.86
USP48-204ENST00000400301 KIF11P52732 1056 aa20.43■□□□□ 0.86
USP48-204ENST00000400301 TMC4Q7Z404 712 aa20.43■□□□□ 0.86
USP48-204ENST00000400301 CHP1Q99653 195 aa20.43■□□□□ 0.86
USP48-204ENST00000400301 TRIM31Q9BZY9 425 aa20.43■□□□□ 0.86
USP48-204ENST00000400301 MEIS1O00470 390 aa20.42■□□□□ 0.86
USP48-204ENST00000400301 LRRC63Q05C16 580 aa20.42■□□□□ 0.86
USP48-204ENST00000400301 ARHGAP44Q17R89 818 aa20.42■□□□□ 0.86
USP48-204ENST00000400301 MCTP2Q6DN12 878 aa20.42■□□□□ 0.86
USP48-204ENST00000400301 REXO1L1PQ8IX06 675 aa20.42■□□□□ 0.86
USP48-204ENST00000400301 U2AF1L4Q8WU68 220 aaKnown RBP20.42■□□□□ 0.86
USP48-204ENST00000400301 TMEM60Q9H2L4 133 aa20.42■□□□□ 0.86
USP48-204ENST00000400301 MED4Q9NPJ6 270 aa20.42■□□□□ 0.86
USP48-204ENST00000400301 TRIM37O94972 964 aa20.42■□□□□ 0.86
USP48-204ENST00000400301 GDF11O95390 407 aa20.42■□□□□ 0.86
USP48-204ENST00000400301 MOCS3O95396 460 aa20.42■□□□□ 0.86
USP48-204ENST00000400301 FCER1AP12319 257 aa20.42■□□□□ 0.86
USP48-204ENST00000400301 HPDP32754 393 aaPredicted RBP20.42■□□□□ 0.86
USP48-204ENST00000400301 EHHADHQ08426 723 aa20.42■□□□□ 0.86
USP48-204ENST00000400301 FAM71BQ8TC56 605 aa20.42■□□□□ 0.86
USP48-204ENST00000400301 PLEKHG2Q9H7P9 1386 aa20.42■□□□□ 0.86
USP48-204ENST00000400301 FOSP01100 380 aaPredicted RBP20.42■□□□□ 0.86
USP48-204ENST00000400301 PLA2G4BP0C869 781 aa20.42■□□□□ 0.86
USP48-204ENST00000400301 STAT1P42224 750 aa20.42■□□□□ 0.86
USP48-204ENST00000400301 PPFIA1Q13136 1202 aa20.42■□□□□ 0.86
USP48-204ENST00000400301 ADSSL1Q8N142 457 aa20.42■□□□□ 0.86
USP48-204ENST00000400301 FAN1Q9Y2M0 1017 aa20.42■□□□□ 0.86
USP48-204ENST00000400301 PPIP5K2O43314 1243 aa20.41■□□□□ 0.86
USP48-204ENST00000400301 SRGAP2O75044 1071 aa20.41■□□□□ 0.86
USP48-204ENST00000400301 KCNB1Q14721 858 aa20.41■□□□□ 0.86
USP48-204ENST00000400301 GBP6Q6ZN66 633 aa20.41■□□□□ 0.86
USP48-204ENST00000400301 COA1Q9GZY4 146 aa20.41■□□□□ 0.86
USP48-204ENST00000400301 XPO5Q9HAV4 1204 aaKnown RBP eCLIP20.41■□□□□ 0.86
USP48-204ENST00000400301 RIC1Q4ADV7 1423 aa20.41■□□□□ 0.86
USP48-204ENST00000400301 PPP1R3GB7ZBB8 358 aa20.41■□□□□ 0.86
USP48-204ENST00000400301 TDP2O95551 362 aa20.41■□□□□ 0.86
USP48-204ENST00000400301 CD44P16070 742 aaKnown RBP20.41■□□□□ 0.86
USP48-204ENST00000400301 EXOC3L4Q17RC7 722 aa20.41■□□□□ 0.86
USP48-204ENST00000400301 CCDC155Q8N6L0 562 aa20.41■□□□□ 0.86
USP48-204ENST00000400301 L2HGDHQ9H9P8 463 aa20.41■□□□□ 0.86
USP48-204ENST00000400301 EMILIN3Q9NT22 766 aa20.41■□□□□ 0.86
USP48-204ENST00000400301 JRKLQ9Y4A0 524 aa20.41■□□□□ 0.86
USP48-204ENST00000400301 SLIT3O75094 1523 aa20.41■□□□□ 0.86
USP48-204ENST00000400301 GOLGA6L7A0A1B0GV03 622 aa20.41■□□□□ 0.86
USP48-204ENST00000400301 GUCY2FP51841 1108 aa20.41■□□□□ 0.86
USP48-204ENST00000400301 CACNB3P54284 484 aa20.41■□□□□ 0.86
USP48-204ENST00000400301 MAP3K9P80192 1104 aa20.41■□□□□ 0.86
USP48-204ENST00000400301 CASP8Q14790 479 aa20.41■□□□□ 0.86
USP48-204ENST00000400301 TRIM9Q9C026 710 aa20.41■□□□□ 0.86
USP48-204ENST00000400301 SMIM23A6NLE4 172 aa20.41■□□□□ 0.86
USP48-204ENST00000400301 CCDC169A6NNP5 214 aa20.41■□□□□ 0.86
USP48-204ENST00000400301 PSMD2Q13200 908 aa20.41■□□□□ 0.86
USP48-204ENST00000400301 LARGE2Q8N3Y3 721 aa20.41■□□□□ 0.86
USP48-204ENST00000400301 PCDHA13Q9Y5I0 950 aa20.41■□□□□ 0.86
USP48-204ENST00000400301 PPARDQ03181 441 aa20.4■□□□□ 0.86
USP48-204ENST00000400301 C2orf54Q08AI8 447 aa20.4■□□□□ 0.86
USP48-204ENST00000400301 DLGAP5Q15398 846 aa20.4■□□□□ 0.86
USP48-204ENST00000400301 PKN1Q16512 942 aa20.4■□□□□ 0.86
USP48-204ENST00000400301 HPS3Q969F9 1004 aa20.4■□□□□ 0.86
USP48-204ENST00000400301 SPZ1Q9BXG8 430 aa20.4■□□□□ 0.86
USP48-204ENST00000400301 ZCCHC17Q9NP64 241 aaKnown RBP20.4■□□□□ 0.86
USP48-204ENST00000400301 APBA3O96018 575 aa20.4■□□□□ 0.86
USP48-204ENST00000400301 GYPCP04921 128 aa20.4■□□□□ 0.86
USP48-204ENST00000400301 CHURC1Q8WUH1 139 aa20.4■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms