RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 ISM2Q6H9L7 571 aa10.15□□□□□ -0.79
LIMCH1-202ENST00000381753 PDZRN4Q6ZMN7 1036 aaPredicted RBP10.15□□□□□ -0.79
LIMCH1-202ENST00000381753 IFNL3Q8IZI9 196 aa10.15□□□□□ -0.79
LIMCH1-202ENST00000381753 DDX23Q9BUQ8 820 aaKnown RBP10.15□□□□□ -0.79
LIMCH1-202ENST00000381753 EMILIN2Q9BXX0 1053 aa10.15□□□□□ -0.79
LIMCH1-202ENST00000381753 ATP7BP35670 1465 aa10.15□□□□□ -0.79
LIMCH1-202ENST00000381753 ALDH1A3P47895 512 aa10.14□□□□□ -0.79
LIMCH1-202ENST00000381753 POSTNQ15063 836 aa10.14□□□□□ -0.79
LIMCH1-202ENST00000381753 ZKSCAN4Q969J2 545 aaPredicted RBP10.14□□□□□ -0.79
LIMCH1-202ENST00000381753 LARSQ9P2J5 1176 aaKnown RBP10.14□□□□□ -0.79
LIMCH1-202ENST00000381753 ABCC4O15439 1325 aa10.14□□□□□ -0.79
LIMCH1-202ENST00000381753 ATP2A1O14983 1001 aa10.14□□□□□ -0.79
LIMCH1-202ENST00000381753 SPTLC2O15270 562 aa10.14□□□□□ -0.79
LIMCH1-202ENST00000381753 TLL1O43897 1013 aa10.14□□□□□ -0.79
LIMCH1-202ENST00000381753 PIK3CAP42336 1068 aa10.14□□□□□ -0.79
LIMCH1-202ENST00000381753 WDR11Q9BZH6 1224 aa10.14□□□□□ -0.79
LIMCH1-202ENST00000381753 SH3BP1Q9Y3L3 701 aa10.14□□□□□ -0.79
LIMCH1-202ENST00000381753 PRAG1Q86YV5 1406 aa10.14□□□□□ -0.79
LIMCH1-202ENST00000381753 N4BP3O15049 544 aa10.14□□□□□ -0.79
LIMCH1-202ENST00000381753 CTU1Q7Z7A3 348 aaKnown RBP10.14□□□□□ -0.79
LIMCH1-202ENST00000381753 BBXQ8WY36 941 aaPredicted RBP10.14□□□□□ -0.79
LIMCH1-202ENST00000381753 TEX13BQ9BXU2 312 aa10.14□□□□□ -0.79
LIMCH1-202ENST00000381753 ZNF302Q9NR11 478 aa10.14□□□□□ -0.79
LIMCH1-202ENST00000381753 ANO10Q9NW15 660 aa10.14□□□□□ -0.79
LIMCH1-202ENST00000381753 PCDHA12Q9UN75 941 aa10.14□□□□□ -0.79
LIMCH1-202ENST00000381753 GOLGA6L10A0A0M3HER8 536 aa10.14□□□□□ -0.79
LIMCH1-202ENST00000381753 SPTLC1O15269 473 aa10.14□□□□□ -0.79
LIMCH1-202ENST00000381753 GADD45BO75293 160 aaPredicted RBP10.14□□□□□ -0.79
LIMCH1-202ENST00000381753 DHX32Q7L7V1 743 aaKnown RBP10.14□□□□□ -0.79
LIMCH1-202ENST00000381753 ACRBPQ8NEB7 543 aa10.14□□□□□ -0.79
LIMCH1-202ENST00000381753 NEK11Q8NG66 645 aa10.14□□□□□ -0.79
LIMCH1-202ENST00000381753 MYL10Q9BUA6 226 aa10.14□□□□□ -0.79
LIMCH1-202ENST00000381753 STRIP2Q9ULQ0 834 aa10.14□□□□□ -0.79
LIMCH1-202ENST00000381753 GDAQ9Y2T3 454 aa10.14□□□□□ -0.79
LIMCH1-202ENST00000381753 USP42Q9H9J4 1324 aaKnown RBP10.14□□□□□ -0.79
LIMCH1-202ENST00000381753 NPC1L1Q9UHC9 1359 aa10.14□□□□□ -0.79
LIMCH1-202ENST00000381753 PRKCQQ04759 706 aa10.14□□□□□ -0.79
LIMCH1-202ENST00000381753 KRT81Q14533 505 aa10.14□□□□□ -0.79
LIMCH1-202ENST00000381753 SCYL3Q8IZE3 742 aa10.14□□□□□ -0.79
LIMCH1-202ENST00000381753 DCAF4Q8WV16 495 aa10.14□□□□□ -0.79
LIMCH1-202ENST00000381753 STAMQ92783 540 aa10.14□□□□□ -0.79
LIMCH1-202ENST00000381753 TTC1Q99614 292 aa10.14□□□□□ -0.79
LIMCH1-202ENST00000381753 TMEM39BQ9GZU3 492 aa10.14□□□□□ -0.79
LIMCH1-202ENST00000381753 TSPYL1Q9H0U9 437 aa10.14□□□□□ -0.79
LIMCH1-202ENST00000381753 NEMFO60524 1076 aa10.13□□□□□ -0.79
LIMCH1-202ENST00000381753 CYP2J2P51589 502 aa10.13□□□□□ -0.79
LIMCH1-202ENST00000381753 TKFCQ3LXA3 575 aa10.13□□□□□ -0.79
LIMCH1-202ENST00000381753 PRR23CQ6ZRP0 262 aa10.13□□□□□ -0.79
LIMCH1-202ENST00000381753 NME8Q8N427 588 aa10.13□□□□□ -0.79
LIMCH1-202ENST00000381753 CD99L2Q8TCZ2 262 aa10.13□□□□□ -0.79
LIMCH1-202ENST00000381753 PUS3Q9BZE2 481 aaKnown RBP10.13□□□□□ -0.79
LIMCH1-202ENST00000381753 THG1LQ9NWX6 298 aaKnown RBP10.13□□□□□ -0.79
LIMCH1-202ENST00000381753 ANAPC5Q9UJX4 755 aa10.13□□□□□ -0.79
LIMCH1-202ENST00000381753 SBDSQ9Y3A5 250 aaKnown RBP eCLIP10.13□□□□□ -0.79
LIMCH1-202ENST00000381753 CTNND1O60716 968 aaKnown RBP10.13□□□□□ -0.79
LIMCH1-202ENST00000381753 KLRC2P26717 231 aa10.13□□□□□ -0.79
LIMCH1-202ENST00000381753 HOXA13P31271 388 aaPredicted RBP10.13□□□□□ -0.79
LIMCH1-202ENST00000381753 PPP2R3AQ06190 1150 aa10.13□□□□□ -0.79
LIMCH1-202ENST00000381753 DYMQ7RTS9 669 aa10.13□□□□□ -0.79
LIMCH1-202ENST00000381753 RHPN2Q8IUC4 686 aa10.13□□□□□ -0.79
LIMCH1-202ENST00000381753 SH3RF3Q8TEJ3 882 aaPredicted RBP10.13□□□□□ -0.79
LIMCH1-202ENST00000381753 CNTNAP4Q9C0A0 1308 aa10.13□□□□□ -0.79
LIMCH1-202ENST00000381753 HUS1O60921 280 aa10.13□□□□□ -0.79
LIMCH1-202ENST00000381753 CTNNB1P35222 781 aa10.13□□□□□ -0.79
LIMCH1-202ENST00000381753 CDK8P49336 464 aa10.13□□□□□ -0.79
LIMCH1-202ENST00000381753 MMP14P50281 582 aa10.13□□□□□ -0.79
LIMCH1-202ENST00000381753 C1QTNF8P60827 252 aa10.13□□□□□ -0.79
LIMCH1-202ENST00000381753 PNMA5Q96PV4 448 aa10.13□□□□□ -0.79
LIMCH1-202ENST00000381753 CCDC68Q9H2F9 335 aa10.13□□□□□ -0.79
LIMCH1-202ENST00000381753 ABCF3Q9NUQ8 709 aa10.13□□□□□ -0.79
LIMCH1-202ENST00000381753 HPCAL4Q9UM19 191 aa10.13□□□□□ -0.79
LIMCH1-202ENST00000381753 CETN3O15182 167 aa10.13□□□□□ -0.79
LIMCH1-202ENST00000381753 HSPA1AP0DMV8 641 aaKnown RBP10.13□□□□□ -0.79
LIMCH1-202ENST00000381753 HSPA1BP0DMV9 641 aaKnown RBP10.13□□□□□ -0.79
LIMCH1-202ENST00000381753 MTMR1Q13613 665 aa10.13□□□□□ -0.79
LIMCH1-202ENST00000381753 E2F5Q15329 346 aa10.13□□□□□ -0.79
LIMCH1-202ENST00000381753 SPC24Q8NBT2 197 aa10.13□□□□□ -0.79
LIMCH1-202ENST00000381753 NUCKS1Q9H1E3 243 aaKnown RBP10.13□□□□□ -0.79
LIMCH1-202ENST00000381753 SEPT10Q9P0V9 454 aa10.13□□□□□ -0.79
LIMCH1-202ENST00000381753 USTQ9Y2C2 406 aa10.13□□□□□ -0.79
LIMCH1-202ENST00000381753 GRK4P32298 578 aa10.12□□□□□ -0.79
LIMCH1-202ENST00000381753 RAD51Q06609 339 aa10.12□□□□□ -0.79
LIMCH1-202ENST00000381753 IFFO1Q0D2I5 559 aa10.12□□□□□ -0.79
LIMCH1-202ENST00000381753 IKBKEQ14164 716 aa10.12□□□□□ -0.79
LIMCH1-202ENST00000381753 IQUBQ8NA54 791 aa10.12□□□□□ -0.79
LIMCH1-202ENST00000381753 UCMAQ8WVF2 138 aa10.12□□□□□ -0.79
LIMCH1-202ENST00000381753 DYNLL2Q96FJ2 89 aa10.12□□□□□ -0.79
LIMCH1-202ENST00000381753 STN1Q9H668 368 aaKnown RBP10.12□□□□□ -0.79
LIMCH1-202ENST00000381753 SOS2Q07890 1332 aaPredicted RBP10.12□□□□□ -0.79
LIMCH1-202ENST00000381753 NCAM2O15394 837 aa10.12□□□□□ -0.79
LIMCH1-202ENST00000381753 MYZAPP0CAP1 466 aa10.12□□□□□ -0.79
LIMCH1-202ENST00000381753 TNFAIP3P21580 790 aa10.12□□□□□ -0.79
LIMCH1-202ENST00000381753 PAFAH1B1P43034 410 aa10.12□□□□□ -0.79
LIMCH1-202ENST00000381753 ADCY1Q08828 1119 aa10.12□□□□□ -0.79
LIMCH1-202ENST00000381753 MKRN4PQ13434 485 aaPredicted RBP10.12□□□□□ -0.79
LIMCH1-202ENST00000381753 ANO6Q4KMQ2 910 aa10.12□□□□□ -0.79
LIMCH1-202ENST00000381753 CAVIN1Q6NZI2 390 aaKnown RBP10.12□□□□□ -0.79
LIMCH1-202ENST00000381753 FAM178BQ8IXR5 827 aa10.12□□□□□ -0.79
LIMCH1-202ENST00000381753 KBTBD3Q8NAB2 608 aa10.12□□□□□ -0.79
LIMCH1-202ENST00000381753 BEST2Q8NFU1 509 aa10.12□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 114.4 ms