RNA–Protein interactions for RNA: ENST00000380285.7

SNX1-202, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 8,119 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-202ENST00000380285 ATG3Q9NT62 314 aa10.42□□□□□ -0.74
SNX1-202ENST00000380285 SRGAP2BP0DMP2 458 aa10.41□□□□□ -0.74
SNX1-202ENST00000380285 DYNC1I2Q13409 638 aaKnown RBP10.41□□□□□ -0.74
SNX1-202ENST00000380285 ALCAMQ13740 583 aa10.41□□□□□ -0.74
SNX1-202ENST00000380285 PKP1Q13835 747 aa10.41□□□□□ -0.74
SNX1-202ENST00000380285 ATG16L1Q676U5 607 aa10.41□□□□□ -0.74
SNX1-202ENST00000380285 TCP11Q8WWU5 503 aa10.41□□□□□ -0.74
SNX1-202ENST00000380285 N4BP2L2Q92802 583 aaPredicted RBP10.41□□□□□ -0.74
SNX1-202ENST00000380285 ZNF148Q9UQR1 794 aa10.41□□□□□ -0.74
SNX1-202ENST00000380285 FGAP02671 866 aa10.41□□□□□ -0.74
SNX1-202ENST00000380285 KRT39Q6A163 491 aa10.41□□□□□ -0.74
SNX1-202ENST00000380285 ARHGEF25Q86VW2 580 aa10.41□□□□□ -0.74
SNX1-202ENST00000380285 SUPT20HQ8NEM7 779 aa10.41□□□□□ -0.74
SNX1-202ENST00000380285 LARP4BQ92615 738 aaKnown RBP10.41□□□□□ -0.74
SNX1-202ENST00000380285 MRPL11Q9Y3B7 192 aaKnown RBP10.41□□□□□ -0.74
SNX1-202ENST00000380285 UFL1O94874 794 aa10.41□□□□□ -0.74
SNX1-202ENST00000380285 HARSP12081 509 aaKnown RBP10.41□□□□□ -0.74
SNX1-202ENST00000380285 PSMC2P35998 433 aaKnown RBP10.41□□□□□ -0.74
SNX1-202ENST00000380285 TECP42680 631 aa10.41□□□□□ -0.74
SNX1-202ENST00000380285 PRPSAP1Q14558 356 aa10.41□□□□□ -0.74
SNX1-202ENST00000380285 DPCR1Q3MIW9 517 aa10.41□□□□□ -0.74
SNX1-202ENST00000380285 PDCD7Q8N8D1 485 aaKnown RBP10.41□□□□□ -0.74
SNX1-202ENST00000380285 NSUN7Q8NE18 718 aaKnown RBP10.41□□□□□ -0.74
SNX1-202ENST00000380285 ZBTB9Q96C00 473 aa10.41□□□□□ -0.74
SNX1-202ENST00000380285 MRPL40Q9NQ50 206 aaKnown RBP10.41□□□□□ -0.74
SNX1-202ENST00000380285 SCINQ9Y6U3 715 aa10.41□□□□□ -0.74
SNX1-202ENST00000380285 PDE6AP16499 860 aa10.41□□□□□ -0.74
SNX1-202ENST00000380285 KCTD16Q68DU8 428 aa10.41□□□□□ -0.74
SNX1-202ENST00000380285 MCF2L2Q86YR7 1114 aa10.41□□□□□ -0.74
SNX1-202ENST00000380285 CD2APQ9Y5K6 639 aa10.41□□□□□ -0.74
SNX1-202ENST00000380285 SRPRBQ9Y5M8 271 aaKnown RBP10.41□□□□□ -0.74
SNX1-202ENST00000380285 TNKSO95271 1327 aa10.41□□□□□ -0.74
SNX1-202ENST00000380285 MYL7Q01449 175 aa10.41□□□□□ -0.74
SNX1-202ENST00000380285 NXNQ6DKJ4 435 aa10.41□□□□□ -0.74
SNX1-202ENST00000380285 FBXO38Q6PIJ6 1188 aa10.41□□□□□ -0.74
SNX1-202ENST00000380285 ZBTB8OSQ8IWT0 167 aa10.41□□□□□ -0.74
SNX1-202ENST00000380285 TPH2Q8IWU9 490 aa10.41□□□□□ -0.74
SNX1-202ENST00000380285 PTCH1Q13635 1447 aa10.41□□□□□ -0.74
SNX1-202ENST00000380285 CFAP73A6NFT4 308 aa10.41□□□□□ -0.74
SNX1-202ENST00000380285 KCNJ6P48051 423 aa10.41□□□□□ -0.74
SNX1-202ENST00000380285 ARHGAP18Q8N392 663 aa10.41□□□□□ -0.74
SNX1-202ENST00000380285 DEPTORQ8TB45 409 aa10.41□□□□□ -0.74
SNX1-202ENST00000380285 ZNF521Q96K83 1311 aa10.41□□□□□ -0.74
SNX1-202ENST00000380285 NME8Q8N427 588 aa10.4□□□□□ -0.74
SNX1-202ENST00000380285 PNMA1Q8ND90 353 aa10.4□□□□□ -0.74
SNX1-202ENST00000380285 JPH2Q9BR39 696 aaPredicted RBP10.4□□□□□ -0.74
SNX1-202ENST00000380285 NRBP1Q9UHY1 535 aa10.4□□□□□ -0.74
SNX1-202ENST00000380285 MAN1B1Q9UKM7 699 aa10.4□□□□□ -0.74
SNX1-202ENST00000380285 CYP2J2P51589 502 aa10.4□□□□□ -0.74
SNX1-202ENST00000380285 ASPRV1Q53RT3 343 aa10.4□□□□□ -0.74
SNX1-202ENST00000380285 PCDHA4Q9UN74 947 aa10.4□□□□□ -0.74
SNX1-202ENST00000380285 PRDM15P57071 1507 aaPredicted RBP10.4□□□□□ -0.74
SNX1-202ENST00000380285 BTBD18B2RXH4 712 aa10.4□□□□□ -0.74
SNX1-202ENST00000380285 RASGRF2O14827 1237 aa10.4□□□□□ -0.74
SNX1-202ENST00000380285 WDR46O15213 610 aaKnown RBP10.4□□□□□ -0.74
SNX1-202ENST00000380285 MSH2P43246 934 aa10.4□□□□□ -0.74
SNX1-202ENST00000380285 TCIRG1Q13488 830 aa10.4□□□□□ -0.74
SNX1-202ENST00000380285 GFM2Q969S9 779 aaKnown RBP10.4□□□□□ -0.74
SNX1-202ENST00000380285 TRIM15Q9C019 465 aa10.4□□□□□ -0.74
SNX1-202ENST00000380285 RFX7Q2KHR2 1363 aa10.4□□□□□ -0.74
SNX1-202ENST00000380285 SPECC1L-ADORA2AF8WAN1 911 aa10.4□□□□□ -0.74
SNX1-202ENST00000380285 STX1BP61266 288 aa10.4□□□□□ -0.74
SNX1-202ENST00000380285 TRAPPC3LQ5T215 181 aa10.4□□□□□ -0.74
SNX1-202ENST00000380285 GPATCH4Q5T3I0 446 aaKnown RBP10.4□□□□□ -0.74
SNX1-202ENST00000380285 RSPH3Q86UC2 560 aa10.4□□□□□ -0.74
SNX1-202ENST00000380285 EXOC8Q8IYI6 725 aa10.4□□□□□ -0.74
SNX1-202ENST00000380285 PDZD8Q8NEN9 1154 aa10.4□□□□□ -0.74
SNX1-202ENST00000380285 ZMYND12Q9H0C1 365 aa10.4□□□□□ -0.74
SNX1-202ENST00000380285 OSBPL5Q9H0X9 879 aaPredicted RBP10.4□□□□□ -0.74
SNX1-202ENST00000380285 NHEJ1Q9H9Q4 299 aaPredicted RBP10.4□□□□□ -0.74
SNX1-202ENST00000380285 MORC2Q9Y6X9 1032 aaPredicted RBP10.4□□□□□ -0.74
SNX1-202ENST00000380285 SEC31AO94979 1220 aaKnown RBP10.4□□□□□ -0.74
SNX1-202ENST00000380285 RAB44Q7Z6P3 723 aaPredicted RBP10.4□□□□□ -0.74
SNX1-202ENST00000380285 ZNF579Q8NAF0 562 aaKnown RBP10.4□□□□□ -0.74
SNX1-202ENST00000380285 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP10.4□□□□□ -0.742e-6■■■■■ 29
SNX1-202ENST00000380285 EAF2Q96CJ1 260 aaPredicted RBP10.4□□□□□ -0.74
SNX1-202ENST00000380285 MLH3Q9UHC1 1453 aa10.4□□□□□ -0.75
SNX1-202ENST00000380285 MYO1CO00159 1063 aa10.4□□□□□ -0.75
SNX1-202ENST00000380285 LIG4P49917 911 aa10.4□□□□□ -0.75
SNX1-202ENST00000380285 GABPAQ06546 454 aa10.4□□□□□ -0.75
SNX1-202ENST00000380285 DHX9Q08211 1270 aaKnown RBP10.4□□□□□ -0.75
SNX1-202ENST00000380285 SGO2Q562F6 1265 aa10.4□□□□□ -0.75
SNX1-202ENST00000380285 C11orf57Q6ZUT1 292 aaPredicted RBP10.4□□□□□ -0.75
SNX1-202ENST00000380285 RHOT2Q8IXI1 618 aa10.4□□□□□ -0.75
SNX1-202ENST00000380285 STAMQ92783 540 aa10.4□□□□□ -0.75
SNX1-202ENST00000380285 TSC22D3Q99576 134 aa10.4□□□□□ -0.75
SNX1-202ENST00000380285 GNL3Q9BVP2 549 aaKnown RBP eCLIP10.4□□□□□ -0.75
SNX1-202ENST00000380285 K7ENM7 598 aa10.39□□□□□ -0.75
SNX1-202ENST00000380285 PODNQ7Z5L7 613 aa10.39□□□□□ -0.75
SNX1-202ENST00000380285 ZBTB38Q8NAP3 1195 aaPredicted RBP10.39□□□□□ -0.75
SNX1-202ENST00000380285 TEKT3Q9BXF9 490 aa10.39□□□□□ -0.75
SNX1-202ENST00000380285 WDR19Q8NEZ3 1342 aa10.39□□□□□ -0.75
SNX1-202ENST00000380285 GRID2IPA4D2P6 1211 aa10.39□□□□□ -0.75
SNX1-202ENST00000380285 MMP1P03956 469 aa10.39□□□□□ -0.75
SNX1-202ENST00000380285 PPP2R5AQ15172 486 aa10.39□□□□□ -0.75
SNX1-202ENST00000380285 NT5C1BQ96P26 610 aa10.39□□□□□ -0.75
SNX1-202ENST00000380285 TRIM56Q9BRZ2 755 aaKnown RBP10.39□□□□□ -0.75
SNX1-202ENST00000380285 KIFC3Q9BVG8 833 aa10.39□□□□□ -0.75
SNX1-202ENST00000380285 TMEM206Q9H813 350 aa10.39□□□□□ -0.75
SNX1-202ENST00000380285 ANAPC5Q9UJX4 755 aa10.39□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms