RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 EPN1Q9Y6I3 576 aaPredicted RBP23.28■■□□□ 1.32
CCDC88B-203ENST00000359902 MYH4Q9Y623 1939 aa23.28■■□□□ 1.32
CCDC88B-203ENST00000359902 PLSCR1O15162 318 aa23.27■■□□□ 1.32
CCDC88B-203ENST00000359902 CENPPQ6IPU0 288 aa23.27■■□□□ 1.32
CCDC88B-203ENST00000359902 KIAA0825Q8IV33 1275 aa23.27■■□□□ 1.32
CCDC88B-203ENST00000359902 RAD54LQ92698 747 aa23.27■■□□□ 1.32
CCDC88B-203ENST00000359902 HAS1Q92839 578 aa23.27■■□□□ 1.32
CCDC88B-203ENST00000359902 DDX25Q9UHL0 483 aaKnown RBP23.27■■□□□ 1.32
CCDC88B-203ENST00000359902 TCP10Q12799 353 aa23.27■■□□□ 1.32
CCDC88B-203ENST00000359902 KRT79Q5XKE5 535 aa23.27■■□□□ 1.32
CCDC88B-203ENST00000359902 SNX29Q8TEQ0 813 aa23.27■■□□□ 1.32
CCDC88B-203ENST00000359902 RASSF10A6NK89 507 aa23.26■■□□□ 1.31
CCDC88B-203ENST00000359902 NDUFA10O95299 355 aa23.26■■□□□ 1.31
CCDC88B-203ENST00000359902 TBC1D8BQ0IIM8 1120 aa23.26■■□□□ 1.31
CCDC88B-203ENST00000359902 SHROOM1Q2M3G4 852 aaPredicted RBP23.26■■□□□ 1.31
CCDC88B-203ENST00000359902 TMEM119Q4V9L6 283 aa23.26■■□□□ 1.31
CCDC88B-203ENST00000359902 WDR59Q6PJI9 974 aa23.26■■□□□ 1.31
CCDC88B-203ENST00000359902 MKL1Q969V6 931 aa23.26■■□□□ 1.31
CCDC88B-203ENST00000359902 TTYH3Q9C0H2 523 aa23.26■■□□□ 1.31
CCDC88B-203ENST00000359902 DHX36Q9H2U1 1008 aaKnown RBP23.26■■□□□ 1.31
CCDC88B-203ENST00000359902 ATF5Q9Y2D1 282 aaPredicted RBP23.26■■□□□ 1.31
CCDC88B-203ENST00000359902 REXO2Q9Y3B8 237 aaKnown RBP23.26■■□□□ 1.31
CCDC88B-203ENST00000359902 DDTLA6NHG4 134 aaPredicted RBP23.26■■□□□ 1.31
CCDC88B-203ENST00000359902 FAM196BA6NMK8 535 aa23.26■■□□□ 1.31
CCDC88B-203ENST00000359902 MIIPQ5JXC2 388 aa23.26■■□□□ 1.31
CCDC88B-203ENST00000359902 DYMQ7RTS9 669 aa23.26■■□□□ 1.31
CCDC88B-203ENST00000359902 KCNK18Q7Z418 384 aa23.26■■□□□ 1.31
CCDC88B-203ENST00000359902 SLC35F6Q8N357 371 aa23.26■■□□□ 1.31
CCDC88B-203ENST00000359902 EPC1Q9H2F5 836 aa23.26■■□□□ 1.31
CCDC88B-203ENST00000359902 FAM198AQ9UFP1 575 aa23.26■■□□□ 1.31
CCDC88B-203ENST00000359902 EEF2P13639 858 aaKnown RBP23.25■■□□□ 1.31
CCDC88B-203ENST00000359902 MTIF2P46199 727 aaKnown RBP23.25■■□□□ 1.31
CCDC88B-203ENST00000359902 STRIP1Q5VSL9 837 aa23.25■■□□□ 1.31
CCDC88B-203ENST00000359902 ZSCAN29Q8IWY8 852 aaPredicted RBP23.25■■□□□ 1.31
CCDC88B-203ENST00000359902 GPR161Q8N6U8 529 aaKnown RBP23.25■■□□□ 1.31
CCDC88B-203ENST00000359902 ECM1Q16610 540 aa23.25■■□□□ 1.31
CCDC88B-203ENST00000359902 DACT2Q5SW24 774 aa23.25■■□□□ 1.31
CCDC88B-203ENST00000359902 KRT222Q8N1A0 295 aa23.25■■□□□ 1.31
CCDC88B-203ENST00000359902 FLAD1Q8NFF5 587 aa23.25■■□□□ 1.31
CCDC88B-203ENST00000359902 NUP58Q9BVL2 599 aa23.25■■□□□ 1.31
CCDC88B-203ENST00000359902 IDI2Q9BXS1 227 aa23.25■■□□□ 1.31
CCDC88B-203ENST00000359902 ARGLU1Q9NWB6 273 aaPredicted RBP23.25■■□□□ 1.31
CCDC88B-203ENST00000359902 PI4KBQ9UBF8 816 aa23.25■■□□□ 1.31
CCDC88B-203ENST00000359902 CDC23Q9UJX2 597 aa23.25■■□□□ 1.31
CCDC88B-203ENST00000359902 NKRFO15226 690 aaKnown RBP eCLIP23.24■■□□□ 1.31
CCDC88B-203ENST00000359902 KLK7P49862 253 aa23.24■■□□□ 1.31
CCDC88B-203ENST00000359902 FKBP1AP62942 108 aaKnown RBP23.24■■□□□ 1.31
CCDC88B-203ENST00000359902 TSR1Q2NL82 804 aaKnown RBP23.24■■□□□ 1.31
CCDC88B-203ENST00000359902 CERKLQ49MI3 558 aaPredicted RBP23.24■■□□□ 1.31
CCDC88B-203ENST00000359902 SH3BP5LQ7L8J4 393 aa23.24■■□□□ 1.31
CCDC88B-203ENST00000359902 RETREG2Q8NC44 543 aa23.24■■□□□ 1.31
CCDC88B-203ENST00000359902 GJA10Q969M2 543 aa23.24■■□□□ 1.31
CCDC88B-203ENST00000359902 NOC4LQ9BVI4 516 aaKnown RBP23.24■■□□□ 1.31
CCDC88B-203ENST00000359902 AGPAT5Q9NUQ2 364 aa23.24■■□□□ 1.31
CCDC88B-203ENST00000359902 NYAP2Q9P242 653 aa23.24■■□□□ 1.31
CCDC88B-203ENST00000359902 SIPA1L1O43166 1804 aa23.24■■□□□ 1.31
CCDC88B-203ENST00000359902 CTAGE9A4FU28 777 aa23.24■■□□□ 1.31
CCDC88B-203ENST00000359902 APBA3O96018 575 aa23.24■■□□□ 1.31
CCDC88B-203ENST00000359902 GCFC2P16383 781 aaKnown RBP23.24■■□□□ 1.31
CCDC88B-203ENST00000359902 MEA1Q16626 185 aa23.24■■□□□ 1.31
CCDC88B-203ENST00000359902 QRICH1Q2TAL8 776 aa23.24■■□□□ 1.31
CCDC88B-203ENST00000359902 TEX35Q5T0J7 233 aa23.24■■□□□ 1.31
CCDC88B-203ENST00000359902 MSL1Q68DK7 614 aa23.24■■□□□ 1.31
CCDC88B-203ENST00000359902 KANSL2Q9H9L4 492 aa23.24■■□□□ 1.31
CCDC88B-203ENST00000359902 MYO1AQ9UBC5 1043 aa23.24■■□□□ 1.31
CCDC88B-203ENST00000359902 MYH7BA7E2Y1 1941 aa23.23■■□□□ 1.31
CCDC88B-203ENST00000359902 RBM5P52756 815 aaKnown RBP eCLIP23.23■■□□□ 1.31
CCDC88B-203ENST00000359902 HDLBPQ00341 1268 aaKnown RBP23.23■■□□□ 1.31
CCDC88B-203ENST00000359902 BMS1Q14692 1282 aaKnown RBP23.23■■□□□ 1.31
CCDC88B-203ENST00000359902 C2CD5Q86YS7 1000 aa23.23■■□□□ 1.31
CCDC88B-203ENST00000359902 SIAH1Q8IUQ4 282 aa23.23■■□□□ 1.31
CCDC88B-203ENST00000359902 GUF1Q8N442 669 aaKnown RBP23.23■■□□□ 1.31
CCDC88B-203ENST00000359902 RABGGTAQ92696 567 aa23.23■■□□□ 1.31
CCDC88B-203ENST00000359902 DDX12PQ92771 950 aa23.23■■□□□ 1.31
CCDC88B-203ENST00000359902 FHOD1Q9Y613 1164 aa23.23■■□□□ 1.31
CCDC88B-203ENST00000359902 USP17L15C9J2P7 530 aa23.22■■□□□ 1.31
CCDC88B-203ENST00000359902 USP17L13C9JLJ4 530 aa23.22■■□□□ 1.31
CCDC88B-203ENST00000359902 USP17L11C9JVI0 530 aa23.22■■□□□ 1.31
CCDC88B-203ENST00000359902 USP17L18D6R9N7 530 aa23.22■■□□□ 1.31
CCDC88B-203ENST00000359902 USP17L22D6RA61 530 aa23.22■■□□□ 1.31
CCDC88B-203ENST00000359902 USP17L17D6RBQ6 530 aa23.22■■□□□ 1.31
CCDC88B-203ENST00000359902 USP17L19D6RCP7 530 aa23.22■■□□□ 1.31
CCDC88B-203ENST00000359902 USP17L20D6RJB6 530 aa23.22■■□□□ 1.31
CCDC88B-203ENST00000359902 RAD21O60216 631 aa23.22■■□□□ 1.31
CCDC88B-203ENST00000359902 ZRANB2O95218 330 aaKnown RBP eCLIP23.22■■□□□ 1.31
CCDC88B-203ENST00000359902 TRIM21P19474 475 aaKnown RBP23.22■■□□□ 1.31
CCDC88B-203ENST00000359902 SLC1A4P43007 532 aa23.22■■□□□ 1.31
CCDC88B-203ENST00000359902 EHHADHQ08426 723 aa23.22■■□□□ 1.31
CCDC88B-203ENST00000359902 USP17L24Q0WX57 530 aa23.22■■□□□ 1.31
CCDC88B-203ENST00000359902 TUBB2AQ13885 445 aa23.22■■□□□ 1.31
CCDC88B-203ENST00000359902 KIF4BQ2VIQ3 1234 aa23.22■■□□□ 1.31
CCDC88B-203ENST00000359902 SLFN13Q68D06 897 aa23.22■■□□□ 1.31
CCDC88B-203ENST00000359902 USP17L6PQ6QN14 398 aa23.22■■□□□ 1.31
CCDC88B-203ENST00000359902 DCAF4Q8WV16 495 aa23.22■■□□□ 1.31
CCDC88B-203ENST00000359902 ERGIC2Q96RQ1 377 aa23.22■■□□□ 1.31
CCDC88B-203ENST00000359902 TUBB2BQ9BVA1 445 aa23.22■■□□□ 1.31
CCDC88B-203ENST00000359902 LRRC27Q9C0I9 530 aa23.22■■□□□ 1.31
CCDC88B-203ENST00000359902 PCDHA12Q9UN75 941 aa23.22■■□□□ 1.31
CCDC88B-203ENST00000359902 SRGAP1Q7Z6B7 1085 aa23.22■■□□□ 1.31
CCDC88B-203ENST00000359902 GOLGA1Q92805 767 aa23.22■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 176.1 ms