RNA–Protein interactions for RNA: ENST00000479135.5

EWSR1-216, Transcript of EWS RNA binding protein 1, human

TSL 1 (best)

Gene EWSR1, Length 7,285 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
EWSR1-216	ENST00000479135	UTP3	Q9NQZ2	479 aa	Known RBP eCLIP	13.95	□□□□□ -0.18	6e-8	■■■■□ 20.2
EWSR1-216	ENST00000479135	SUPT16H	Q9Y5B9	1047 aa	Known RBP	13.94	□□□□□ -0.18
EWSR1-216	ENST00000479135	HTATSF1	O43719	755 aa	Known RBP	13.93	□□□□□ -0.18
EWSR1-216	ENST00000479135	SLK	Q9H2G2	1235 aa	Predicted RBP	13.93	□□□□□ -0.18
EWSR1-216	ENST00000479135	TPM3	P06753	285 aa		13.93	□□□□□ -0.18
EWSR1-216	ENST00000479135	FOXD4L6	Q3SYB3	417 aa	Predicted RBP	13.89	□□□□□ -0.19
EWSR1-216	ENST00000479135	FOXD4L3	Q6VB84	417 aa	Predicted RBP	13.89	□□□□□ -0.19
EWSR1-216	ENST00000479135	MYO15B	Q96JP2	1530 aa		13.89	□□□□□ -0.19
EWSR1-216	ENST00000479135	TPM4	P67936	248 aa		13.88	□□□□□ -0.19
EWSR1-216	ENST00000479135	B4GALNT3	Q6L9W6	998 aa		13.87	□□□□□ -0.19
EWSR1-216	ENST00000479135	FAM13B	Q9NYF5	915 aa		13.86	□□□□□ -0.19
EWSR1-216	ENST00000479135	IBSP	P21815	317 aa	Predicted RBP	13.84	□□□□□ -0.19
EWSR1-216	ENST00000479135	ZNF330	Q9Y3S2	320 aa	Predicted RBP	13.84	□□□□□ -0.19
EWSR1-216	ENST00000479135	TPD52L1	Q16890	204 aa	Predicted RBP	13.83	□□□□□ -0.2
EWSR1-216	ENST00000479135	FBXW7	Q969H0	707 aa		13.82	□□□□□ -0.2
EWSR1-216	ENST00000479135	SOX12	O15370	315 aa		13.82	□□□□□ -0.2
EWSR1-216	ENST00000479135	RDX	P35241	583 aa	Known RBP	13.82	□□□□□ -0.2
EWSR1-216	ENST00000479135		H0YHG0	523 aa		13.81	□□□□□ -0.2
EWSR1-216	ENST00000479135	MARCH6	O60337	910 aa		13.81	□□□□□ -0.2
EWSR1-216	ENST00000479135	CSRNP3	Q8WYN3	585 aa		13.81	□□□□□ -0.2
EWSR1-216	ENST00000479135	TONSL	Q96HA7	1378 aa		13.81	□□□□□ -0.2
EWSR1-216	ENST00000479135	MIER1	Q8N108	512 aa		13.81	□□□□□ -0.2
EWSR1-216	ENST00000479135	PCMTD1	Q96MG8	357 aa	Predicted RBP	13.81	□□□□□ -0.2
EWSR1-216	ENST00000479135	CCAR1	Q8IX12	1150 aa	Known RBP	13.81	□□□□□ -0.2
EWSR1-216	ENST00000479135	CCDC191	Q8NCU4	936 aa		13.8	□□□□□ -0.2
EWSR1-216	ENST00000479135	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	13.8	□□□□□ -0.2	4e-6	■■■□□ 14.7
EWSR1-216	ENST00000479135	GOLGA6L3	A6NEY3	463 aa		13.79	□□□□□ -0.2
EWSR1-216	ENST00000479135	MCC	P23508	829 aa		13.79	□□□□□ -0.2
EWSR1-216	ENST00000479135	AEBP1	Q8IUX7	1158 aa		13.79	□□□□□ -0.2
EWSR1-216	ENST00000479135	PKNOX2	Q96KN3	472 aa		13.78	□□□□□ -0.2
EWSR1-216	ENST00000479135	RAD21	O60216	631 aa		13.77	□□□□□ -0.21
EWSR1-216	ENST00000479135	CCDC9	Q9Y3X0	531 aa	Known RBP	13.76	□□□□□ -0.21
EWSR1-216	ENST00000479135	ANKRD62	A6NC57	917 aa		13.76	□□□□□ -0.21
EWSR1-216	ENST00000479135	GPS2	Q13227	327 aa		13.76	□□□□□ -0.21
EWSR1-216	ENST00000479135	TEX35	Q5T0J7	233 aa		13.75	□□□□□ -0.21
EWSR1-216	ENST00000479135	HMMR	O75330	724 aa		13.75	□□□□□ -0.21
EWSR1-216	ENST00000479135	NOM1	Q5C9Z4	860 aa	Known RBP	13.75	□□□□□ -0.21
EWSR1-216	ENST00000479135	CHIC2	Q9UKJ5	165 aa		13.75	□□□□□ -0.21
EWSR1-216	ENST00000479135	NAP1L1	P55209	391 aa	Known RBP	13.75	□□□□□ -0.21
EWSR1-216	ENST00000479135	NEFH	P12036	1026 aa		13.75	□□□□□ -0.21
EWSR1-216	ENST00000479135	DYDC1	Q8WWB3	177 aa		13.74	□□□□□ -0.21
EWSR1-216	ENST00000479135	RUFY1	Q96T51	708 aa		13.73	□□□□□ -0.21
EWSR1-216	ENST00000479135	TNNT1	P13805	278 aa		13.73	□□□□□ -0.21
EWSR1-216	ENST00000479135	CCDC70	Q6NSX1	233 aa		13.73	□□□□□ -0.21
EWSR1-216	ENST00000479135	ZFYVE27	Q5T4F4	411 aa		13.73	□□□□□ -0.21
EWSR1-216	ENST00000479135	TSR1	Q2NL82	804 aa	Known RBP	13.72	□□□□□ -0.21
EWSR1-216	ENST00000479135	TTLL5	Q6EMB2	1281 aa		13.72	□□□□□ -0.21
EWSR1-216	ENST00000479135	TOMM22	Q9NS69	142 aa		13.72	□□□□□ -0.21
EWSR1-216	ENST00000479135	CHMP3	Q9Y3E7	222 aa		13.72	□□□□□ -0.21
EWSR1-216	ENST00000479135	CCDC97	Q96F63	343 aa	Predicted RBP	13.71	□□□□□ -0.21
EWSR1-216	ENST00000479135	GBP4	Q96PP9	640 aa		13.71	□□□□□ -0.21
EWSR1-216	ENST00000479135	KIAA1211	Q6ZU35	1233 aa		13.71	□□□□□ -0.21
EWSR1-216	ENST00000479135	PAF1	Q8N7H5	531 aa		13.71	□□□□□ -0.22
EWSR1-216	ENST00000479135	HOMER1	Q86YM7	354 aa		13.71	□□□□□ -0.22
EWSR1-216	ENST00000479135	LMOD3	Q0VAK6	560 aa		13.7	□□□□□ -0.22
EWSR1-216	ENST00000479135	TSPYL1	Q9H0U9	437 aa		13.7	□□□□□ -0.22
EWSR1-216	ENST00000479135	SAMD1	Q6SPF0	538 aa	Predicted RBP	13.69	□□□□□ -0.22
EWSR1-216	ENST00000479135	CLASRP	Q8N2M8	674 aa	Known RBP	13.68	□□□□□ -0.22
EWSR1-216	ENST00000479135	CALD1	Q05682	793 aa	Known RBP	13.68	□□□□□ -0.22
EWSR1-216	ENST00000479135	TICAM2	Q86XR7	235 aa		13.68	□□□□□ -0.22
EWSR1-216	ENST00000479135	HSP90AB2P	Q58FF8	381 aa		13.68	□□□□□ -0.22
EWSR1-216	ENST00000479135	U2SURP	O15042	1029 aa	Known RBP	13.68	□□□□□ -0.22
EWSR1-216	ENST00000479135	PUS7	Q96PZ0	661 aa	Known RBP	13.67	□□□□□ -0.22
EWSR1-216	ENST00000479135	MFAP1	P55081	439 aa	Known RBP	13.67	□□□□□ -0.22
EWSR1-216	ENST00000479135	SYAP1	Q96A49	352 aa	Predicted RBP	13.67	□□□□□ -0.22
EWSR1-216	ENST00000479135	PPP1R15A	O75807	674 aa	Predicted RBP	13.67	□□□□□ -0.22
EWSR1-216	ENST00000479135		G3V3G9	751 aa		13.67	□□□□□ -0.22
EWSR1-216	ENST00000479135	DCAF8	Q5TAQ9	597 aa		13.67	□□□□□ -0.22
EWSR1-216	ENST00000479135	NF2	P35240	595 aa		13.67	□□□□□ -0.22
EWSR1-216	ENST00000479135	CENPH	Q9H3R5	247 aa		13.66	□□□□□ -0.22
EWSR1-216	ENST00000479135	SF3A1	Q15459	793 aa	Known RBP	13.66	□□□□□ -0.22
EWSR1-216	ENST00000479135	GORAB	Q5T7V8	394 aa		13.66	□□□□□ -0.22
EWSR1-216	ENST00000479135	CCDC180	Q9P1Z9	1646 aa		13.66	□□□□□ -0.22
EWSR1-216	ENST00000479135	MAPK8IP3	Q9UPT6	1336 aa		13.66	□□□□□ -0.22
EWSR1-216	ENST00000479135	ODF2	Q5BJF6	829 aa		13.64	□□□□□ -0.23
EWSR1-216	ENST00000479135	SEPT11	Q9NVA2	429 aa	Known RBP	13.64	□□□□□ -0.23
EWSR1-216	ENST00000479135	TRIM6-TRIM34	B2RNG4	842 aa		13.64	□□□□□ -0.23
EWSR1-216	ENST00000479135	CT47A1	Q5JQC4	288 aa	Predicted RBP	13.64	□□□□□ -0.23
EWSR1-216	ENST00000479135	PPM1F	P49593	454 aa	Predicted RBP	13.64	□□□□□ -0.23
EWSR1-216	ENST00000479135	WDR70	Q9NW82	654 aa		13.64	□□□□□ -0.23
EWSR1-216	ENST00000479135	TCEAL9	Q9UHQ7	104 aa		13.63	□□□□□ -0.23
EWSR1-216	ENST00000479135	CC2D1B	Q5T0F9	858 aa	Known RBP	13.63	□□□□□ -0.23
EWSR1-216	ENST00000479135	RSPH6A	Q9H0K4	717 aa		13.63	□□□□□ -0.23
EWSR1-216	ENST00000479135	FOSB	P53539	338 aa		13.63	□□□□□ -0.23
EWSR1-216	ENST00000479135	GPATCH11	Q8N954	259 aa		13.62	□□□□□ -0.23
EWSR1-216	ENST00000479135	GOLGA6L19	H0YKK7	550 aa		13.61	□□□□□ -0.23
EWSR1-216	ENST00000479135	RSPH4A	Q5TD94	716 aa		13.61	□□□□□ -0.23
EWSR1-216	ENST00000479135	RBM10	P98175	930 aa	Known RBP	13.61	□□□□□ -0.23
EWSR1-216	ENST00000479135	SLTM	Q9NWH9	1034 aa	Known RBP eCLIP	13.61	□□□□□ -0.23
EWSR1-216	ENST00000479135	HMGN5	P82970	282 aa	Known RBP	13.6	□□□□□ -0.23
EWSR1-216	ENST00000479135	GIMAP7	Q8NHV1	300 aa		13.6	□□□□□ -0.23
EWSR1-216	ENST00000479135	RSF1	Q96T23	1441 aa	Predicted RBP	13.6	□□□□□ -0.23
EWSR1-216	ENST00000479135	TPM2	P07951	284 aa		13.6	□□□□□ -0.23
EWSR1-216	ENST00000479135	ENOX2	Q16206	610 aa	Known RBP	13.6	□□□□□ -0.23
EWSR1-216	ENST00000479135	KDM4A	O75164	1064 aa		13.59	□□□□□ -0.23
EWSR1-216	ENST00000479135	RGL3	Q3MIN7	710 aa		13.59	□□□□□ -0.23
EWSR1-216	ENST00000479135	SLC4A3	P48751	1232 aa		13.58	□□□□□ -0.24
EWSR1-216	ENST00000479135	CFAP53	Q96M91	514 aa		13.58	□□□□□ -0.24
EWSR1-216	ENST00000479135	RBM19	Q9Y4C8	960 aa	Known RBP	13.58	□□□□□ -0.24
EWSR1-216	ENST00000479135	BECN2	A8MW95	431 aa		13.57	□□□□□ -0.24

Retrieved 100 of 20,778 RNA–protein pairs in 59.5 ms