RNA–Protein interactions for RNA: ENST00000642041.1

PHGDH-234, Transcript of phosphoglycerate dehydrogenase, humanhuman

Gene PHGDH, Length 943 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDH-234ENST00000642041 TRIM43BA6NCK2 446 aa19.72■□□□□ 0.75
PHGDH-234ENST00000642041 DNAJB2P25686 324 aa19.72■□□□□ 0.75
PHGDH-234ENST00000642041 CAP2P40123 477 aa19.72■□□□□ 0.75
PHGDH-234ENST00000642041 MRE11P49959 708 aa19.72■□□□□ 0.75
PHGDH-234ENST00000642041 SNX17Q15036 470 aa19.72■□□□□ 0.75
PHGDH-234ENST00000642041 TMTC3Q6ZXV5 915 aa19.72■□□□□ 0.75
PHGDH-234ENST00000642041 TRIM43Q96BQ3 446 aaPredicted RBP19.72■□□□□ 0.75
PHGDH-234ENST00000642041 HSFX4A0A1B0GTS1 333 aaPredicted RBP19.71■□□□□ 0.75
PHGDH-234ENST00000642041 HSFX3A0A1B0GWH4 333 aaPredicted RBP19.71■□□□□ 0.75
PHGDH-234ENST00000642041 FAM196BA6NMK8 535 aa19.71■□□□□ 0.75
PHGDH-234ENST00000642041 FIBPO43427 364 aa19.71■□□□□ 0.75
PHGDH-234ENST00000642041 CNGA1P29973 690 aa19.71■□□□□ 0.75
PHGDH-234ENST00000642041 GRM4Q14833 912 aa19.71■□□□□ 0.75
PHGDH-234ENST00000642041 TRIM60Q495X7 471 aa19.71■□□□□ 0.75
PHGDH-234ENST00000642041 RILPL1Q5EBL4 403 aa19.71■□□□□ 0.75
PHGDH-234ENST00000642041 FAM47AQ5JRC9 791 aa19.71■□□□□ 0.75
PHGDH-234ENST00000642041 KRT40Q6A162 431 aa19.71■□□□□ 0.75
PHGDH-234ENST00000642041 RCSD1Q6JBY9 416 aa19.71■□□□□ 0.75
PHGDH-234ENST00000642041 SH3RF1Q7Z6J0 888 aa19.71■□□□□ 0.75
PHGDH-234ENST00000642041 FERMT3Q86UX7 667 aa19.71■□□□□ 0.75
PHGDH-234ENST00000642041 METTL16Q86W50 562 aaKnown RBP19.71■□□□□ 0.75
PHGDH-234ENST00000642041 STK11IPQ8N1F8 1099 aa19.71■□□□□ 0.75
PHGDH-234ENST00000642041 ARRDC4Q8NCT1 418 aa19.71■□□□□ 0.75
PHGDH-234ENST00000642041 GTF3C2Q8WUA4 911 aaPredicted RBP19.71■□□□□ 0.75
PHGDH-234ENST00000642041 PPM1EQ8WY54 764 aa19.71■□□□□ 0.75
PHGDH-234ENST00000642041 DYNLL2Q96FJ2 89 aa19.71■□□□□ 0.75
PHGDH-234ENST00000642041 WDR18Q9BV38 432 aa19.71■□□□□ 0.75
PHGDH-234ENST00000642041 TMOD4Q9NZQ9 345 aa19.71■□□□□ 0.75
PHGDH-234ENST00000642041 FLRT1Q9NZU1 646 aa19.71■□□□□ 0.75
PHGDH-234ENST00000642041 TCHHQ07283 1943 aa19.7■□□□□ 0.74
PHGDH-234ENST00000642041 BACE1P56817 501 aa19.7■□□□□ 0.74
PHGDH-234ENST00000642041 GJC2Q5T442 439 aaPredicted RBP19.7■□□□□ 0.74
PHGDH-234ENST00000642041 CCDC183Q5T5S1 534 aa19.7■□□□□ 0.74
PHGDH-234ENST00000642041 TEX2Q8IWB9 1127 aa19.7■□□□□ 0.74
PHGDH-234ENST00000642041 CCDC148Q8NFR7 591 aa19.7■□□□□ 0.74
PHGDH-234ENST00000642041 LEO1Q8WVC0 666 aaPredicted RBP19.7■□□□□ 0.74
PHGDH-234ENST00000642041 GAS2L1Q99501 681 aaPredicted RBP19.7■□□□□ 0.74
PHGDH-234ENST00000642041 GINM1Q9NU53 330 aa19.7■□□□□ 0.74
PHGDH-234ENST00000642041 DDX19AQ9NUU7 478 aaKnown RBP19.7■□□□□ 0.74
PHGDH-234ENST00000642041 SIPA1L1O43166 1804 aa19.69■□□□□ 0.74
PHGDH-234ENST00000642041 ATAD5Q96QE3 1844 aa19.69■□□□□ 0.74
PHGDH-234ENST00000642041 CTAGE5O15320 804 aa19.69■□□□□ 0.74
PHGDH-234ENST00000642041 TTLL1O95922 423 aa19.69■□□□□ 0.74
PHGDH-234ENST00000642041 MMP1P03956 469 aa19.69■□□□□ 0.74
PHGDH-234ENST00000642041 MTMR2Q13614 643 aa19.69■□□□□ 0.74
PHGDH-234ENST00000642041 RRP1BQ14684 758 aaKnown RBP19.69■□□□□ 0.74
PHGDH-234ENST00000642041 SF3A1Q15459 793 aaKnown RBP19.69■□□□□ 0.74
PHGDH-234ENST00000642041 ASPRV1Q53RT3 343 aa19.69■□□□□ 0.74
PHGDH-234ENST00000642041 C1orf53Q5VUE5 145 aa19.69■□□□□ 0.74
PHGDH-234ENST00000642041 MYSM1Q5VVJ2 828 aa19.69■□□□□ 0.74
PHGDH-234ENST00000642041 KANSL2Q9H9L4 492 aa19.69■□□□□ 0.74
PHGDH-234ENST00000642041 STX8Q9UNK0 236 aa19.69■□□□□ 0.74
PHGDH-234ENST00000642041 HCN4Q9Y3Q4 1203 aa19.69■□□□□ 0.74
PHGDH-234ENST00000642041 KBTBD13C9JR72 458 aa19.68■□□□□ 0.74
PHGDH-234ENST00000642041 PARP1P09874 1014 aaKnown RBP19.68■□□□□ 0.74
PHGDH-234ENST00000642041 NASPP49321 788 aaPredicted RBP19.68■□□□□ 0.74
PHGDH-234ENST00000642041 EPHB4P54760 987 aa19.68■□□□□ 0.74
PHGDH-234ENST00000642041 EVX2Q03828 476 aa19.68■□□□□ 0.74
PHGDH-234ENST00000642041 TRAF1Q13077 416 aa19.68■□□□□ 0.74
PHGDH-234ENST00000642041 GPATCH4Q5T3I0 446 aaKnown RBP19.68■□□□□ 0.74
PHGDH-234ENST00000642041 CAVIN1Q6NZI2 390 aaKnown RBP19.68■□□□□ 0.74
PHGDH-234ENST00000642041 POTEEQ6S8J3 1075 aa19.68■□□□□ 0.74
PHGDH-234ENST00000642041 SLC44A5Q8NCS7 719 aa19.68■□□□□ 0.74
PHGDH-234ENST00000642041 ANP32BQ92688 251 aaKnown RBP19.68■□□□□ 0.74
PHGDH-234ENST00000642041 TIFAQ96CG3 184 aa19.68■□□□□ 0.74
PHGDH-234ENST00000642041 SPZ1Q9BXG8 430 aa19.68■□□□□ 0.74
PHGDH-234ENST00000642041 SENP2Q9HC62 589 aa19.68■□□□□ 0.74
PHGDH-234ENST00000642041 IL17RBQ9NRM6 502 aa19.68■□□□□ 0.74
PHGDH-234ENST00000642041 MTMR4Q9NYA4 1195 aa19.68■□□□□ 0.74
PHGDH-234ENST00000642041 NOL7Q9UMY1 257 aaKnown RBP19.68■□□□□ 0.74
PHGDH-234ENST00000642041 MYH8P13535 1937 aa19.68■□□□□ 0.74
PHGDH-234ENST00000642041 A0A1W2PQ27 194 aa19.67■□□□□ 0.74
PHGDH-234ENST00000642041 A0A1W2PQ64 194 aa19.67■□□□□ 0.74
PHGDH-234ENST00000642041 A0A1W2PQD8 194 aa19.67■□□□□ 0.74
PHGDH-234ENST00000642041 C19orf81C9J6K1 198 aa19.67■□□□□ 0.74
PHGDH-234ENST00000642041 SMIM22K7EJ46 135 aa19.67■□□□□ 0.74
PHGDH-234ENST00000642041 PPP6R2O75170 966 aa19.67■□□□□ 0.74
PHGDH-234ENST00000642041 CAVIN2O95810 425 aa19.67■□□□□ 0.74
PHGDH-234ENST00000642041 TRAPPC10P48553 1259 aa19.67■□□□□ 0.74
PHGDH-234ENST00000642041 ATP2B2Q01814 1243 aa19.67■□□□□ 0.74
PHGDH-234ENST00000642041 ADALQ6DHV7 355 aa19.67■□□□□ 0.74
PHGDH-234ENST00000642041 CCDC144CPQ8IYA2 1237 aa19.67■□□□□ 0.74
PHGDH-234ENST00000642041 TRPV1Q8NER1 839 aa19.67■□□□□ 0.74
PHGDH-234ENST00000642041 GPT2Q8TD30 523 aa19.67■□□□□ 0.74
PHGDH-234ENST00000642041 PHKBQ93100 1093 aa19.67■□□□□ 0.74
PHGDH-234ENST00000642041 TMEM47Q9BQJ4 181 aa19.67■□□□□ 0.74
PHGDH-234ENST00000642041 PAGR1Q9BTK6 254 aa19.67■□□□□ 0.74
PHGDH-234ENST00000642041 GLT8D2Q9H1C3 349 aa19.67■□□□□ 0.74
PHGDH-234ENST00000642041 CABP5Q9NP86 173 aa19.67■□□□□ 0.74
PHGDH-234ENST00000642041 EIF4ENIF1Q9NRA8 985 aaKnown RBP19.67■□□□□ 0.74
PHGDH-234ENST00000642041 PALM3A6NDB9 673 aaPredicted RBP19.66■□□□□ 0.74
PHGDH-234ENST00000642041 SLC15A5A6NIM6 579 aa19.66■□□□□ 0.74
PHGDH-234ENST00000642041 HOXC6P09630 235 aa19.66■□□□□ 0.74
PHGDH-234ENST00000642041 ITGB8P26012 769 aa19.66■□□□□ 0.74
PHGDH-234ENST00000642041 SHMT1P34896 483 aa19.66■□□□□ 0.74
PHGDH-234ENST00000642041 STK38Q15208 465 aa19.66■□□□□ 0.74
PHGDH-234ENST00000642041 PFKFB3Q16875 520 aaPredicted RBP19.66■□□□□ 0.74
PHGDH-234ENST00000642041 TATDN1Q6P1N9 297 aa19.66■□□□□ 0.74
PHGDH-234ENST00000642041 TMEM179Q6ZVK1 233 aa19.66■□□□□ 0.74
PHGDH-234ENST00000642041 NOSTRINQ8IVI9 506 aa19.66■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 97 ms