RNA–Protein interactions for RNA: ENST00000628915.2

R3HDM1-220, Transcript of R3H domain containing 1, humanhuman

TSL 5 BASIC

Gene R3HDM1, Length 4,325 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
R3HDM1-220ENST00000628915 ZNF624Q9P2J8 865 aaPredicted RBP4.28□□□□□ -1.72
R3HDM1-220ENST00000628915 DSEQ9UL01 958 aa4.28□□□□□ -1.72
R3HDM1-220ENST00000628915 ZNF215Q9UL58 517 aaPredicted RBP4.28□□□□□ -1.72
R3HDM1-220ENST00000628915 STRIP2Q9ULQ0 834 aa4.28□□□□□ -1.72
R3HDM1-220ENST00000628915 FAM50BQ9Y247 325 aa4.28□□□□□ -1.72
R3HDM1-220ENST00000628915 ARHGAP23Q9P227 1491 aa4.28□□□□□ -1.72
R3HDM1-220ENST00000628915 PIK3C2GO75747 1445 aa4.28□□□□□ -1.72
R3HDM1-220ENST00000628915 GOLGA8MH3BSY2 632 aa4.28□□□□□ -1.72
R3HDM1-220ENST00000628915 APOEP02649 317 aa4.28□□□□□ -1.72
R3HDM1-220ENST00000628915 SLC3A2P08195 630 aaKnown RBP4.28□□□□□ -1.72
R3HDM1-220ENST00000628915 CCDC192P0DO97 292 aa4.28□□□□□ -1.72
R3HDM1-220ENST00000628915 ENDOUP21128 410 aaKnown RBP4.28□□□□□ -1.72
R3HDM1-220ENST00000628915 SCNN1AP37088 669 aa4.28□□□□□ -1.72
R3HDM1-220ENST00000628915 MAGEA10P43363 369 aaPredicted RBP4.28□□□□□ -1.72
R3HDM1-220ENST00000628915 PLA2G4AP47712 749 aa4.28□□□□□ -1.72
R3HDM1-220ENST00000628915 TRIM14Q14142 442 aa4.28□□□□□ -1.72
R3HDM1-220ENST00000628915 ELF2Q15723 593 aa4.28□□□□□ -1.72
R3HDM1-220ENST00000628915 C1orf228Q6PIY5 440 aa4.28□□□□□ -1.72
R3HDM1-220ENST00000628915 DNAJB7Q7Z6W7 309 aaPredicted RBP4.28□□□□□ -1.72
R3HDM1-220ENST00000628915 GIMAP8Q8ND71 665 aaPredicted RBP4.28□□□□□ -1.72
R3HDM1-220ENST00000628915 RFWD2Q8NHY2 731 aa4.28□□□□□ -1.72
R3HDM1-220ENST00000628915 FNBP1Q96RU3 617 aa4.28□□□□□ -1.72
R3HDM1-220ENST00000628915 PLIN2Q99541 437 aa4.28□□□□□ -1.72
R3HDM1-220ENST00000628915 OSBPL2Q9H1P3 480 aa4.28□□□□□ -1.72
R3HDM1-220ENST00000628915 KCNF1Q9H3M0 494 aa4.28□□□□□ -1.72
R3HDM1-220ENST00000628915 SYNDIG1Q9H7V2 258 aa4.28□□□□□ -1.72
R3HDM1-220ENST00000628915 BATF3Q9NR55 127 aa4.28□□□□□ -1.72
R3HDM1-220ENST00000628915 CHST12Q9NRB3 414 aa4.28□□□□□ -1.72
R3HDM1-220ENST00000628915 SDAD1Q9NVU7 687 aaKnown RBP eCLIP4.28□□□□□ -1.72
R3HDM1-220ENST00000628915 MARF1Q9Y4F3 1742 aaKnown RBP4.28□□□□□ -1.72
R3HDM1-220ENST00000628915 PTPRMP28827 1452 aa4.28□□□□□ -1.72
R3HDM1-220ENST00000628915 URI1O94763 535 aaPredicted RBP4.27□□□□□ -1.73
R3HDM1-220ENST00000628915 CD2BP2O95400 341 aaKnown RBP4.27□□□□□ -1.73
R3HDM1-220ENST00000628915 CPP00450 1065 aa4.27□□□□□ -1.73
R3HDM1-220ENST00000628915 PCNAP12004 261 aa4.27□□□□□ -1.73
R3HDM1-220ENST00000628915 HCLS1P14317 486 aaPredicted RBP4.27□□□□□ -1.73
R3HDM1-220ENST00000628915 H2AFXP16104 143 aaPredicted RBP4.27□□□□□ -1.73
R3HDM1-220ENST00000628915 HOXD10P28358 340 aa4.27□□□□□ -1.73
R3HDM1-220ENST00000628915 SLC16A2P36021 539 aa4.27□□□□□ -1.73
R3HDM1-220ENST00000628915 GNL1P36915 607 aaPredicted RBP4.27□□□□□ -1.73
R3HDM1-220ENST00000628915 MLLT3P42568 568 aaPredicted RBP4.27□□□□□ -1.73
R3HDM1-220ENST00000628915 SERPINB4P48594 390 aa4.27□□□□□ -1.73
R3HDM1-220ENST00000628915 ASPHQ12797 758 aa4.27□□□□□ -1.73
R3HDM1-220ENST00000628915 SNCBQ16143 134 aa4.27□□□□□ -1.73
R3HDM1-220ENST00000628915 INO80DQ53TQ3 878 aaPredicted RBP4.27□□□□□ -1.73
R3HDM1-220ENST00000628915 AFAP1L1Q8TED9 768 aa4.27□□□□□ -1.73
R3HDM1-220ENST00000628915 SH3TC2Q8TF17 1288 aa4.27□□□□□ -1.73
R3HDM1-220ENST00000628915 TBC1D5Q92609 795 aa4.27□□□□□ -1.73
R3HDM1-220ENST00000628915 CFAP57Q96MR6 1250 aa4.27□□□□□ -1.73
R3HDM1-220ENST00000628915 RUNDC3BQ96NL0 473 aa4.27□□□□□ -1.73
R3HDM1-220ENST00000628915 TUBA1CQ9BQE3 449 aa4.27□□□□□ -1.73
R3HDM1-220ENST00000628915 PARD6BQ9BYG5 372 aa4.27□□□□□ -1.73
R3HDM1-220ENST00000628915 FAM129AQ9BZQ8 928 aa4.27□□□□□ -1.73
R3HDM1-220ENST00000628915 DDX21Q9NR30 783 aaKnown RBP eCLIP4.27□□□□□ -1.73
R3HDM1-220ENST00000628915 RHBDL2Q9NX52 303 aa4.27□□□□□ -1.73
R3HDM1-220ENST00000628915 TMED5Q9Y3A6 229 aa4.27□□□□□ -1.73
R3HDM1-220ENST00000628915 SETD1BQ9UPS6 1966 aaKnown RBP4.27□□□□□ -1.73
R3HDM1-220ENST00000628915 M0R2C6 588 aa4.27□□□□□ -1.73
R3HDM1-220ENST00000628915 APOL1O14791 398 aa4.27□□□□□ -1.73
R3HDM1-220ENST00000628915 CETN3O15182 167 aa4.27□□□□□ -1.73
R3HDM1-220ENST00000628915 TSPAN1O60635 241 aa4.27□□□□□ -1.73
R3HDM1-220ENST00000628915 PAHP00439 452 aa4.27□□□□□ -1.73
R3HDM1-220ENST00000628915 HOXA10P31260 410 aaPredicted RBP4.27□□□□□ -1.73
R3HDM1-220ENST00000628915 HOXC13P31276 330 aa4.27□□□□□ -1.73
R3HDM1-220ENST00000628915 SMTNP53814 917 aa4.27□□□□□ -1.73
R3HDM1-220ENST00000628915 GRIK3Q13003 919 aa4.27□□□□□ -1.73
R3HDM1-220ENST00000628915 C15orf59Q2T9L4 293 aaPredicted RBP4.27□□□□□ -1.73
R3HDM1-220ENST00000628915 SPATA1Q5VX52 437 aa4.27□□□□□ -1.73
R3HDM1-220ENST00000628915 IL31Q6EBC2 164 aa4.27□□□□□ -1.73
R3HDM1-220ENST00000628915 CORO6Q6QEF8 472 aa4.27□□□□□ -1.73
R3HDM1-220ENST00000628915 SH3BP5LQ7L8J4 393 aa4.27□□□□□ -1.73
R3HDM1-220ENST00000628915 USP48Q86UV5 1035 aa4.27□□□□□ -1.73
R3HDM1-220ENST00000628915 CHD1LQ86WJ1 897 aa4.27□□□□□ -1.73
R3HDM1-220ENST00000628915 ARHGAP18Q8N392 663 aa4.27□□□□□ -1.73
R3HDM1-220ENST00000628915 CLIP3Q96DZ5 547 aa4.27□□□□□ -1.73
R3HDM1-220ENST00000628915 TNIP3Q96KP6 325 aa4.27□□□□□ -1.73
R3HDM1-220ENST00000628915 ALS2CR12Q96Q35 445 aa4.27□□□□□ -1.73
R3HDM1-220ENST00000628915 ZNF277Q9NRM2 450 aaPredicted RBP4.27□□□□□ -1.73
R3HDM1-220ENST00000628915 ATP11BQ9Y2G3 1177 aa4.27□□□□□ -1.73
R3HDM1-220ENST00000628915 BOLA1Q9Y3E2 137 aa4.27□□□□□ -1.73
R3HDM1-220ENST00000628915 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP4.27□□□□□ -1.734e-7■□□□□ 10.4
R3HDM1-220ENST00000628915 ABCC3O15438 1527 aa4.27□□□□□ -1.73
R3HDM1-220ENST00000628915 WDR33Q9C0J8 1336 aaKnown RBP4.27□□□□□ -1.73
R3HDM1-220ENST00000628915 CHMP2AO43633 222 aa4.27□□□□□ -1.73
R3HDM1-220ENST00000628915 TBC1D12O60347 775 aa4.27□□□□□ -1.73
R3HDM1-220ENST00000628915 RANBP6O60518 1105 aaKnown RBP4.27□□□□□ -1.73
R3HDM1-220ENST00000628915 VAMP4O75379 141 aa4.27□□□□□ -1.73
R3HDM1-220ENST00000628915 TMCC1O94876 653 aa4.27□□□□□ -1.73
R3HDM1-220ENST00000628915 MBD4O95243 580 aa4.27□□□□□ -1.73
R3HDM1-220ENST00000628915 EPB42P16452 691 aa4.27□□□□□ -1.73
R3HDM1-220ENST00000628915 MLH1P40692 756 aa4.27□□□□□ -1.73
R3HDM1-220ENST00000628915 BPIFB3P59826 476 aa4.27□□□□□ -1.73
R3HDM1-220ENST00000628915 MAP3K9P80192 1104 aa4.27□□□□□ -1.73
R3HDM1-220ENST00000628915 PPP2R3AQ06190 1150 aa4.27□□□□□ -1.73
R3HDM1-220ENST00000628915 LRP8Q14114 963 aa4.27□□□□□ -1.73
R3HDM1-220ENST00000628915 BRDTQ58F21 947 aaPredicted RBP4.27□□□□□ -1.73
R3HDM1-220ENST00000628915 CFAP157Q5JU67 520 aa4.27□□□□□ -1.73
R3HDM1-220ENST00000628915 CEP85LQ5SZL2 805 aa4.27□□□□□ -1.73
R3HDM1-220ENST00000628915 TBC1D9Q6ZT07 1266 aa4.27□□□□□ -1.73
R3HDM1-220ENST00000628915 B4GALNT4Q76KP1 1039 aa4.27□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms