RNA–Protein interactions for RNA: ENST00000626109.1

LINC00538-201, long intergenic non-protein coding RNA 538, humanhuman

BASIC

Gene LINC00538, Length 1,906 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00538-201ENST00000626109 IFFO2Q5TF58 517 aa13.12□□□□□ -0.31
LINC00538-201ENST00000626109 PDXDC1Q6P996 788 aa13.12□□□□□ -0.31
LINC00538-201ENST00000626109 FAM200AQ8TCP9 573 aa13.12□□□□□ -0.31
LINC00538-201ENST00000626109 GTF3C6Q969F1 213 aa13.12□□□□□ -0.31
LINC00538-201ENST00000626109 NBPF3Q9H094 633 aa13.12□□□□□ -0.31
LINC00538-201ENST00000626109 CRISPLD2Q9H0B8 497 aa13.12□□□□□ -0.31
LINC00538-201ENST00000626109 MKNK2Q9HBH9 465 aa13.12□□□□□ -0.31
LINC00538-201ENST00000626109 TOMM22Q9NS69 142 aa13.12□□□□□ -0.31
LINC00538-201ENST00000626109 CCDC163A0A0D9SF12 145 aa13.11□□□□□ -0.31
LINC00538-201ENST00000626109 PPFIA3O75145 1194 aa13.11□□□□□ -0.31
LINC00538-201ENST00000626109 CDK8P49336 464 aa13.11□□□□□ -0.31
LINC00538-201ENST00000626109 HMGN5P82970 282 aaKnown RBP13.11□□□□□ -0.31
LINC00538-201ENST00000626109 ARID5AQ03989 594 aa13.11□□□□□ -0.31
LINC00538-201ENST00000626109 PPP2R5AQ15172 486 aa13.11□□□□□ -0.31
LINC00538-201ENST00000626109 Q6ZUG5 572 aa13.11□□□□□ -0.31
LINC00538-201ENST00000626109 TAS1R3Q7RTX0 852 aa13.11□□□□□ -0.31
LINC00538-201ENST00000626109 RALYLQ86SE5 291 aaKnown RBP13.11□□□□□ -0.31
LINC00538-201ENST00000626109 SLC44A5Q8NCS7 719 aa13.11□□□□□ -0.31
LINC00538-201ENST00000626109 TNMDQ9H2S6 317 aa13.11□□□□□ -0.31
LINC00538-201ENST00000626109 CNNM2Q9H8M5 875 aa13.11□□□□□ -0.31
LINC00538-201ENST00000626109 CD248Q9HCU0 757 aa13.11□□□□□ -0.31
LINC00538-201ENST00000626109 IP6K2Q9UHH9 426 aa13.11□□□□□ -0.31
LINC00538-201ENST00000626109 SIPA1L1O43166 1804 aa13.11□□□□□ -0.31
LINC00538-201ENST00000626109 UQCRHLA0A096LP55 91 aa13.11□□□□□ -0.31
LINC00538-201ENST00000626109 FAM196BA6NMK8 535 aa13.11□□□□□ -0.31
LINC00538-201ENST00000626109 E7EWF7 191 aa13.11□□□□□ -0.31
LINC00538-201ENST00000626109 UQCRHP07919 91 aa13.11□□□□□ -0.31
LINC00538-201ENST00000626109 STK3Q13188 491 aa13.11□□□□□ -0.31
LINC00538-201ENST00000626109 NOLC1Q14978 699 aaKnown RBP eCLIP13.11□□□□□ -0.31
LINC00538-201ENST00000626109 ZC3H12AQ5D1E8 599 aaKnown RBP13.11□□□□□ -0.31
LINC00538-201ENST00000626109 RRP12Q5JTH9 1297 aaKnown RBP13.11□□□□□ -0.31
LINC00538-201ENST00000626109 MIGA2Q7L4E1 593 aa13.11□□□□□ -0.31
LINC00538-201ENST00000626109 PGBD3Q8N328 593 aa13.11□□□□□ -0.31
LINC00538-201ENST00000626109 RNF217Q8TC41 542 aa13.11□□□□□ -0.31
LINC00538-201ENST00000626109 PRIMPOLQ96LW4 560 aa13.11□□□□□ -0.31
LINC00538-201ENST00000626109 KRT23Q9C075 422 aa13.11□□□□□ -0.31
LINC00538-201ENST00000626109 DDX52Q9Y2R4 599 aaKnown RBP eCLIP13.11□□□□□ -0.31
LINC00538-201ENST00000626109 TAF6LQ9Y6J9 622 aa13.11□□□□□ -0.31
LINC00538-201ENST00000626109 NEDD4P46934 1319 aa13.1□□□□□ -0.31
LINC00538-201ENST00000626109 TCHHQ07283 1943 aa13.1□□□□□ -0.31
LINC00538-201ENST00000626109 POLR2AP24928 1970 aaKnown RBP13.1□□□□□ -0.31
LINC00538-201ENST00000626109 ORC4O43929 436 aa13.1□□□□□ -0.31
LINC00538-201ENST00000626109 PRDM1O75626 825 aa13.1□□□□□ -0.31
LINC00538-201ENST00000626109 FGRP09769 529 aa13.1□□□□□ -0.31
LINC00538-201ENST00000626109 NT5C2P49902 561 aa13.1□□□□□ -0.31
LINC00538-201ENST00000626109 TMEM95Q3KNT9 176 aa13.1□□□□□ -0.31
LINC00538-201ENST00000626109 ATL3Q6DD88 541 aa13.1□□□□□ -0.31
LINC00538-201ENST00000626109 DLK2Q6UY11 383 aa13.1□□□□□ -0.31
LINC00538-201ENST00000626109 DHX32Q7L7V1 743 aaKnown RBP13.1□□□□□ -0.31
LINC00538-201ENST00000626109 LMNTD2Q8IXW0 634 aa13.1□□□□□ -0.31
LINC00538-201ENST00000626109 ZNF444Q8N0Y2 327 aaPredicted RBP13.1□□□□□ -0.31
LINC00538-201ENST00000626109 TEX19Q8NA77 164 aa13.1□□□□□ -0.31
LINC00538-201ENST00000626109 SMC1BQ8NDV3 1235 aa13.1□□□□□ -0.31
LINC00538-201ENST00000626109 NCOA7Q8NI08 942 aa13.1□□□□□ -0.31
LINC00538-201ENST00000626109 CCDC34Q96HJ3 373 aa13.1□□□□□ -0.31
LINC00538-201ENST00000626109 ZNF341Q9BYN7 854 aa13.1□□□□□ -0.31
LINC00538-201ENST00000626109 DNAJC18Q9H819 358 aa13.1□□□□□ -0.31
LINC00538-201ENST00000626109 NOVA2Q9UNW9 492 aaKnown RBP13.1□□□□□ -0.31
LINC00538-201ENST00000626109 PPP1R3GB7ZBB8 358 aa13.09□□□□□ -0.31
LINC00538-201ENST00000626109 TRAF5O00463 557 aa13.09□□□□□ -0.31
LINC00538-201ENST00000626109 PPP1R12BO60237 982 aaPredicted RBP13.09□□□□□ -0.31
LINC00538-201ENST00000626109 TOMM70O94826 608 aa13.09□□□□□ -0.31
LINC00538-201ENST00000626109 KCNA2P16389 499 aa13.09□□□□□ -0.31
LINC00538-201ENST00000626109 SHMT1P34896 483 aa13.09□□□□□ -0.31
LINC00538-201ENST00000626109 MAP3K10Q02779 954 aa13.09□□□□□ -0.31
LINC00538-201ENST00000626109 Q3C1V9 767 aa13.09□□□□□ -0.31
LINC00538-201ENST00000626109 STOX1Q6ZVD7 989 aa13.09□□□□□ -0.31
LINC00538-201ENST00000626109 MCF2L2Q86YR7 1114 aa13.09□□□□□ -0.31
LINC00538-201ENST00000626109 LEO1Q8WVC0 666 aaPredicted RBP13.09□□□□□ -0.31
LINC00538-201ENST00000626109 ESR2Q92731 530 aa13.09□□□□□ -0.31
LINC00538-201ENST00000626109 TCEANC2Q96MN5 208 aa13.09□□□□□ -0.31
LINC00538-201ENST00000626109 LIMD1Q9UGP4 676 aa13.09□□□□□ -0.31
LINC00538-201ENST00000626109 RABGAP1Q9Y3P9 1069 aa13.09□□□□□ -0.31
LINC00538-201ENST00000626109 SSC5DA1L4H1 1573 aa13.09□□□□□ -0.31
LINC00538-201ENST00000626109 SLURP2P0DP57 97 aa13.09□□□□□ -0.31
LINC00538-201ENST00000626109 TYRO3Q06418 890 aa13.09□□□□□ -0.31
LINC00538-201ENST00000626109 SEPT2Q15019 361 aa13.09□□□□□ -0.31
LINC00538-201ENST00000626109 CERKLQ49MI3 558 aaPredicted RBP13.09□□□□□ -0.31
LINC00538-201ENST00000626109 TATDN1Q6P1N9 297 aa13.09□□□□□ -0.31
LINC00538-201ENST00000626109 NDUFAF2Q8N183 169 aa13.09□□□□□ -0.31
LINC00538-201ENST00000626109 LSM14AQ8ND56 463 aaKnown RBP13.09□□□□□ -0.31
LINC00538-201ENST00000626109 PRR7Q8TB68 274 aa13.09□□□□□ -0.31
LINC00538-201ENST00000626109 HELQQ8TDG4 1101 aa13.09□□□□□ -0.31
LINC00538-201ENST00000626109 RNF34Q969K3 372 aa13.09□□□□□ -0.31
LINC00538-201ENST00000626109 CCDC17Q96LX7 622 aa13.09□□□□□ -0.31
LINC00538-201ENST00000626109 ASB16Q96NS5 453 aa13.09□□□□□ -0.31
LINC00538-201ENST00000626109 ZNF408Q9H9D4 720 aa13.09□□□□□ -0.31
LINC00538-201ENST00000626109 INCENPQ9NQS7 918 aa13.09□□□□□ -0.31
LINC00538-201ENST00000626109 TACC3Q9Y6A5 838 aa13.09□□□□□ -0.31
LINC00538-201ENST00000626109 GRXCR2A6NFK2 248 aa13.08□□□□□ -0.32
LINC00538-201ENST00000626109 TSPY2A6NKD2 308 aa13.08□□□□□ -0.32
LINC00538-201ENST00000626109 B4E1Z4 1266 aa13.08□□□□□ -0.32
LINC00538-201ENST00000626109 RANBP6O60518 1105 aaKnown RBP13.08□□□□□ -0.32
LINC00538-201ENST00000626109 PFKFB2O60825 505 aa13.08□□□□□ -0.32
LINC00538-201ENST00000626109 RASA1P20936 1047 aa13.08□□□□□ -0.32
LINC00538-201ENST00000626109 NAP1L1P55209 391 aaKnown RBP13.08□□□□□ -0.32
LINC00538-201ENST00000626109 BICD2Q8TD16 824 aa13.08□□□□□ -0.32
LINC00538-201ENST00000626109 CLSTN2Q9H4D0 955 aa13.08□□□□□ -0.32
LINC00538-201ENST00000626109 GPCPD1Q9NPB8 672 aa13.08□□□□□ -0.32
LINC00538-201ENST00000626109 HOMER2Q9NSB8 354 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms