RNA–Protein interactions for RNA: ENST00000621181.4

CLK1-215, Transcript of CDC like kinase 1, humanhuman

TSL 1 (best) BASIC

Gene CLK1, Length 1,843 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-215ENST00000621181 TRANK1O15050 2925 aa9.27□□□□□ -0.92
CLK1-215ENST00000621181 PRRC2BQ5JSZ5 2229 aaKnown RBP9.27□□□□□ -0.93
CLK1-215ENST00000621181 SOWAHBA6NEL2 793 aa9.27□□□□□ -0.93
CLK1-215ENST00000621181 PATL2C9JE40 543 aaKnown RBP9.27□□□□□ -0.93
CLK1-215ENST00000621181 MYOGP15173 224 aa9.27□□□□□ -0.93
CLK1-215ENST00000621181 PSMC6P62333 389 aa9.27□□□□□ -0.93
CLK1-215ENST00000621181 TFAP4Q01664 338 aa9.27□□□□□ -0.93
CLK1-215ENST00000621181 LRRFIP1Q32MZ4 808 aaKnown RBP9.27□□□□□ -0.93
CLK1-215ENST00000621181 TKFCQ3LXA3 575 aa9.27□□□□□ -0.93
CLK1-215ENST00000621181 IQSEC1Q6DN90 963 aa9.27□□□□□ -0.93
CLK1-215ENST00000621181 NSMFQ6X4W1 530 aa9.27□□□□□ -0.93
CLK1-215ENST00000621181 NEDD1Q8NHV4 660 aa9.27□□□□□ -0.93
CLK1-215ENST00000621181 STAG1Q8WVM7 1258 aa9.27□□□□□ -0.93
CLK1-215ENST00000621181 SCLYQ96I15 445 aa9.27□□□□□ -0.93
CLK1-215ENST00000621181 GMCL1Q96IK5 515 aa9.27□□□□□ -0.93
CLK1-215ENST00000621181 NAPBQ9H115 298 aa9.27□□□□□ -0.93
CLK1-215ENST00000621181 WNT8AQ9H1J5 351 aa9.27□□□□□ -0.93
CLK1-215ENST00000621181 PDGFCQ9NRA1 345 aa9.27□□□□□ -0.93
CLK1-215ENST00000621181 DDX49Q9Y6V7 483 aaKnown RBP9.27□□□□□ -0.93
CLK1-215ENST00000621181 ZNF536O15090 1300 aa9.27□□□□□ -0.93
CLK1-215ENST00000621181 GRIN2DO15399 1336 aa9.27□□□□□ -0.93
CLK1-215ENST00000621181 PLIN4Q96Q06 1357 aa9.27□□□□□ -0.93
CLK1-215ENST00000621181 TCF20Q9UGU0 1960 aaKnown RBP9.27□□□□□ -0.93
CLK1-215ENST00000621181 M0R2C6 588 aa9.26□□□□□ -0.93
CLK1-215ENST00000621181 SUPT20HL2P0C7V6 817 aa9.26□□□□□ -0.93
CLK1-215ENST00000621181 AAK1Q2M2I8 961 aa9.26□□□□□ -0.93
CLK1-215ENST00000621181 PPP4R3BQ5MIZ7 849 aa9.26□□□□□ -0.93
CLK1-215ENST00000621181 KIAA1211Q6ZU35 1233 aa9.26□□□□□ -0.93
CLK1-215ENST00000621181 KCTD1Q719H9 257 aa9.26□□□□□ -0.93
CLK1-215ENST00000621181 IFNL3Q8IZI9 196 aa9.26□□□□□ -0.93
CLK1-215ENST00000621181 CRBNQ96SW2 442 aa9.26□□□□□ -0.93
CLK1-215ENST00000621181 ALDH8A1Q9H2A2 487 aaPredicted RBP9.26□□□□□ -0.93
CLK1-215ENST00000621181 CYP39A1Q9NYL5 469 aa9.26□□□□□ -0.93
CLK1-215ENST00000621181 CCPG1Q9ULG6 757 aa9.26□□□□□ -0.93
CLK1-215ENST00000621181 CIZ1Q9ULV3 898 aaPredicted RBP9.26□□□□□ -0.93
CLK1-215ENST00000621181 MTMR7Q9Y216 660 aa9.26□□□□□ -0.93
CLK1-215ENST00000621181 Q9Y3F1 56 aa9.26□□□□□ -0.93
CLK1-215ENST00000621181 PCDHA11Q9Y5I1 949 aa9.26□□□□□ -0.93
CLK1-215ENST00000621181 TSPY2A6NKD2 308 aa9.26□□□□□ -0.93
CLK1-215ENST00000621181 PFKMP08237 780 aa9.26□□□□□ -0.93
CLK1-215ENST00000621181 SNAP25P60880 206 aa9.26□□□□□ -0.93
CLK1-215ENST00000621181 TFF2Q03403 129 aa9.26□□□□□ -0.93
CLK1-215ENST00000621181 PPARAQ07869 468 aa9.26□□□□□ -0.93
CLK1-215ENST00000621181 MUM1L1Q5H9M0 696 aa9.26□□□□□ -0.93
CLK1-215ENST00000621181 TMEM67Q5HYA8 995 aa9.26□□□□□ -0.93
CLK1-215ENST00000621181 TAPT1Q6NXT6 567 aa9.26□□□□□ -0.93
CLK1-215ENST00000621181 DEFB128Q7Z7B8 93 aa9.26□□□□□ -0.93
CLK1-215ENST00000621181 IPO9Q96P70 1041 aaKnown RBP9.26□□□□□ -0.93
CLK1-215ENST00000621181 NECAB3Q96P71 396 aaPredicted RBP9.26□□□□□ -0.93
CLK1-215ENST00000621181 VTA1Q9NP79 307 aa9.26□□□□□ -0.93
CLK1-215ENST00000621181 GPHNQ9NQX3 736 aaPredicted RBP9.26□□□□□ -0.93
CLK1-215ENST00000621181 TRMT13Q9NUP7 481 aaKnown RBP9.26□□□□□ -0.93
CLK1-215ENST00000621181 GTPBP6O43824 516 aaPredicted RBP9.25□□□□□ -0.93
CLK1-215ENST00000621181 CA3P07451 260 aa9.25□□□□□ -0.93
CLK1-215ENST00000621181 CYP2C9P11712 490 aa9.25□□□□□ -0.93
CLK1-215ENST00000621181 CCDC96Q2M329 555 aa9.25□□□□□ -0.93
CLK1-215ENST00000621181 DUSP28Q4G0W2 176 aa9.25□□□□□ -0.93
CLK1-215ENST00000621181 C20orf194Q5TEA3 1177 aa9.25□□□□□ -0.93
CLK1-215ENST00000621181 FAM212AQ96EL1 285 aa9.25□□□□□ -0.93
CLK1-215ENST00000621181 BACH2Q9BYV9 841 aa9.25□□□□□ -0.93
CLK1-215ENST00000621181 PRR12Q9ULL5 1215 aa9.25□□□□□ -0.93
CLK1-215ENST00000621181 TNKSO95271 1327 aa9.24□□□□□ -0.93
CLK1-215ENST00000621181 LRRC37A2A6NM11 1700 aa9.24□□□□□ -0.93
CLK1-215ENST00000621181 PLA2G6O60733 806 aa9.24□□□□□ -0.93
CLK1-215ENST00000621181 ACTN1P12814 892 aa9.24□□□□□ -0.93
CLK1-215ENST00000621181 PLA2G5P39877 138 aa9.24□□□□□ -0.93
CLK1-215ENST00000621181 CPT1AP50416 773 aa9.24□□□□□ -0.93
CLK1-215ENST00000621181 KCNQ1P51787 676 aa9.24□□□□□ -0.93
CLK1-215ENST00000621181 TTLL4Q14679 1199 aa9.24□□□□□ -0.93
CLK1-215ENST00000621181 FAM47CQ5HY64 1035 aa9.24□□□□□ -0.93
CLK1-215ENST00000621181 TMEM63BQ5T3F8 832 aa9.24□□□□□ -0.93
CLK1-215ENST00000621181 RCSD1Q6JBY9 416 aa9.24□□□□□ -0.93
CLK1-215ENST00000621181 FAM122AQ96E09 287 aa9.24□□□□□ -0.93
CLK1-215ENST00000621181 PURBQ96QR8 312 aaKnown RBP9.24□□□□□ -0.93
CLK1-215ENST00000621181 SEC62Q99442 399 aaKnown RBP9.24□□□□□ -0.93
CLK1-215ENST00000621181 C1QTNF1Q9BXJ1 281 aa9.24□□□□□ -0.93
CLK1-215ENST00000621181 WDR11Q9BZH6 1224 aa9.24□□□□□ -0.93
CLK1-215ENST00000621181 CERS4Q9HA82 394 aa9.24□□□□□ -0.93
CLK1-215ENST00000621181 POLR3EQ9NVU0 708 aa9.24□□□□□ -0.93
CLK1-215ENST00000621181 ADD3Q9UEY8 706 aaKnown RBP9.24□□□□□ -0.93
CLK1-215ENST00000621181 RAD50Q92878 1312 aa9.24□□□□□ -0.93
CLK1-215ENST00000621181 PTPDC1A2A3K4 754 aa9.24□□□□□ -0.93
CLK1-215ENST00000621181 NMT2O60551 498 aa9.24□□□□□ -0.93
CLK1-215ENST00000621181 ICAM1P05362 532 aa9.24□□□□□ -0.93
CLK1-215ENST00000621181 MYL3P08590 195 aa9.24□□□□□ -0.93
CLK1-215ENST00000621181 BMP1P13497 986 aa9.24□□□□□ -0.93
CLK1-215ENST00000621181 PDE4AP27815 886 aa9.24□□□□□ -0.93
CLK1-215ENST00000621181 PURAQ00577 322 aaKnown RBP9.24□□□□□ -0.93
CLK1-215ENST00000621181 BRDTQ58F21 947 aaPredicted RBP9.24□□□□□ -0.93
CLK1-215ENST00000621181 RASGRP2Q7LDG7 609 aa9.24□□□□□ -0.93
CLK1-215ENST00000621181 FSD1Q9BTV5 496 aa9.24□□□□□ -0.93
CLK1-215ENST00000621181 RFXAPO00287 272 aa9.23□□□□□ -0.93
CLK1-215ENST00000621181 ERC2O15083 957 aa9.23□□□□□ -0.93
CLK1-215ENST00000621181 RANBP6O60518 1105 aaKnown RBP9.23□□□□□ -0.93
CLK1-215ENST00000621181 PYGBP11216 843 aa9.23□□□□□ -0.93
CLK1-215ENST00000621181 ALDH5A1P51649 535 aaPredicted RBP9.23□□□□□ -0.93
CLK1-215ENST00000621181 BAATQ14032 418 aaPredicted RBP9.23□□□□□ -0.93
CLK1-215ENST00000621181 OR6J1Q8NGC5 347 aa9.23□□□□□ -0.93
CLK1-215ENST00000621181 SP7Q8TDD2 431 aaPredicted RBP9.23□□□□□ -0.93
CLK1-215ENST00000621181 MORC4Q8TE76 937 aa9.23□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms