RNA–Protein interactions for RNA: ENST00000618902.1

SHMT1-211, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 5 BASIC

Gene SHMT1, Length 378 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-211ENST00000618902 FANCBQ8NB91 859 aa6.08□□□□□ -1.44
SHMT1-211ENST00000618902 ARRDC4Q8NCT1 418 aa6.08□□□□□ -1.44
SHMT1-211ENST00000618902 U2AF1L4Q8WU68 220 aaKnown RBP6.08□□□□□ -1.44
SHMT1-211ENST00000618902 PIBF1Q8WXW3 757 aa6.08□□□□□ -1.44
SHMT1-211ENST00000618902 TBC1D5Q92609 795 aa6.08□□□□□ -1.44
SHMT1-211ENST00000618902 PURBQ96QR8 312 aaKnown RBP6.08□□□□□ -1.44
SHMT1-211ENST00000618902 PIGSQ96S52 555 aa6.08□□□□□ -1.44
SHMT1-211ENST00000618902 ALDH8A1Q9H2A2 487 aaPredicted RBP6.08□□□□□ -1.44
SHMT1-211ENST00000618902 PDRG1Q9NUG6 133 aa6.08□□□□□ -1.44
SHMT1-211ENST00000618902 FLRT1Q9NZU1 646 aa6.08□□□□□ -1.44
SHMT1-211ENST00000618902 OGDHLQ9ULD0 1010 aa6.08□□□□□ -1.44
SHMT1-211ENST00000618902 NR2E3Q9Y5X4 410 aa6.08□□□□□ -1.44
SHMT1-211ENST00000618902 SLC12A7Q9Y666 1083 aa6.08□□□□□ -1.44
SHMT1-211ENST00000618902 DDX49Q9Y6V7 483 aaKnown RBP6.08□□□□□ -1.44
SHMT1-211ENST00000618902 LCTP09848 1927 aa6.07□□□□□ -1.44
SHMT1-211ENST00000618902 ASTN1O14525 1302 aa6.07□□□□□ -1.44
SHMT1-211ENST00000618902 DNAJC25-GNG10A0A024R161 153 aa6.07□□□□□ -1.44
SHMT1-211ENST00000618902 GOLGA6L3A6NEY3 463 aa6.07□□□□□ -1.44
SHMT1-211ENST00000618902 ASB14A6NK59 587 aa6.07□□□□□ -1.44
SHMT1-211ENST00000618902 GOLGA8AA7E2F4 631 aa6.07□□□□□ -1.44
SHMT1-211ENST00000618902 GOLGA8BA8MQT2 603 aa6.07□□□□□ -1.44
SHMT1-211ENST00000618902 SEPT4O43236 478 aa6.07□□□□□ -1.44
SHMT1-211ENST00000618902 CAPN15O75808 1086 aa6.07□□□□□ -1.44
SHMT1-211ENST00000618902 CTDNEP1O95476 244 aa6.07□□□□□ -1.44
SHMT1-211ENST00000618902 TFRCP02786 760 aaKnown RBP6.07□□□□□ -1.44
SHMT1-211ENST00000618902 ICAM1P05362 532 aa6.07□□□□□ -1.44
SHMT1-211ENST00000618902 PGK2P07205 417 aa6.07□□□□□ -1.44
SHMT1-211ENST00000618902 ALAS1P13196 640 aa6.07□□□□□ -1.44
SHMT1-211ENST00000618902 ELNP15502 786 aa6.07□□□□□ -1.44
SHMT1-211ENST00000618902 ADORA2AP29274 412 aa6.07□□□□□ -1.44
SHMT1-211ENST00000618902 SLC4A3P48751 1232 aa6.07□□□□□ -1.44
SHMT1-211ENST00000618902 NEK4P51957 841 aa6.07□□□□□ -1.44
SHMT1-211ENST00000618902 CCT2P78371 535 aaKnown RBP6.07□□□□□ -1.44
SHMT1-211ENST00000618902 PPP2R5BQ15173 497 aa6.07□□□□□ -1.44
SHMT1-211ENST00000618902 RABEP1Q15276 862 aa6.07□□□□□ -1.44
SHMT1-211ENST00000618902 CCL14Q16627 93 aa6.07□□□□□ -1.44
SHMT1-211ENST00000618902 ME3Q16798 604 aa6.07□□□□□ -1.44
SHMT1-211ENST00000618902 RTN1Q16799 776 aa6.07□□□□□ -1.44
SHMT1-211ENST00000618902 C1orf53Q5VUE5 145 aa6.07□□□□□ -1.44
SHMT1-211ENST00000618902 TYW1BQ6NUM6 668 aa6.07□□□□□ -1.44
SHMT1-211ENST00000618902 NOL8Q76FK4 1167 aaKnown RBP6.07□□□□□ -1.44
SHMT1-211ENST00000618902 NCAPG2Q86XI2 1143 aa6.07□□□□□ -1.44
SHMT1-211ENST00000618902 CCDC82Q8N4S0 544 aa6.07□□□□□ -1.44
SHMT1-211ENST00000618902 NECAB1Q8N987 351 aa6.07□□□□□ -1.44
SHMT1-211ENST00000618902 NPLOC4Q8TAT6 608 aa6.07□□□□□ -1.44
SHMT1-211ENST00000618902 SH3TC2Q8TF17 1288 aa6.07□□□□□ -1.44
SHMT1-211ENST00000618902 SPZ1Q9BXG8 430 aa6.07□□□□□ -1.44
SHMT1-211ENST00000618902 XRN2Q9H0D6 950 aaKnown RBP eCLIP6.07□□□□□ -1.44
SHMT1-211ENST00000618902 ACAD9Q9H845 621 aa6.07□□□□□ -1.44
SHMT1-211ENST00000618902 A1CFQ9NQ94 594 aaKnown RBP6.07□□□□□ -1.44
SHMT1-211ENST00000618902 HOMER2Q9NSB8 354 aa6.07□□□□□ -1.44
SHMT1-211ENST00000618902 RNF146Q9NTX7 359 aa6.07□□□□□ -1.44
SHMT1-211ENST00000618902 ADD3Q9UEY8 706 aaKnown RBP6.07□□□□□ -1.44
SHMT1-211ENST00000618902 Q9Y3F1 56 aa6.07□□□□□ -1.44
SHMT1-211ENST00000618902 TRIOBPQ9H2D6 2365 aa6.07□□□□□ -1.44
SHMT1-211ENST00000618902 MCM3APO60318 1980 aa6.06□□□□□ -1.44
SHMT1-211ENST00000618902 MYH6P13533 1939 aa6.06□□□□□ -1.44
SHMT1-211ENST00000618902 SOWAHBA6NEL2 793 aa6.06□□□□□ -1.44
SHMT1-211ENST00000618902 DNM1LO00429 736 aa6.06□□□□□ -1.44
SHMT1-211ENST00000618902 ZBTB5O15062 677 aa6.06□□□□□ -1.44
SHMT1-211ENST00000618902 PFKFB2O60825 505 aa6.06□□□□□ -1.44
SHMT1-211ENST00000618902 CALM1P0DP23 149 aa6.06□□□□□ -1.44
SHMT1-211ENST00000618902 CALM2P0DP24 149 aa6.06□□□□□ -1.44
SHMT1-211ENST00000618902 CALM3P0DP25 149 aa6.06□□□□□ -1.44
SHMT1-211ENST00000618902 PRKAR2AP13861 404 aaKnown RBP6.06□□□□□ -1.44
SHMT1-211ENST00000618902 CYP2B6P20813 491 aa6.06□□□□□ -1.44
SHMT1-211ENST00000618902 METAP2P50579 478 aaKnown RBP eCLIP6.06□□□□□ -1.44
SHMT1-211ENST00000618902 RCAN1P53805 252 aa6.06□□□□□ -1.44
SHMT1-211ENST00000618902 NKX3-2P78367 333 aa6.06□□□□□ -1.44
SHMT1-211ENST00000618902 CNTN2Q02246 1040 aa6.06□□□□□ -1.44
SHMT1-211ENST00000618902 SCRN1Q12765 414 aa6.06□□□□□ -1.44
SHMT1-211ENST00000618902 STK3Q13188 491 aa6.06□□□□□ -1.44
SHMT1-211ENST00000618902 PKN1Q16512 942 aa6.06□□□□□ -1.44
SHMT1-211ENST00000618902 ZNF792Q3KQV3 632 aa6.06□□□□□ -1.44
SHMT1-211ENST00000618902 USH1GQ495M9 461 aa6.06□□□□□ -1.44
SHMT1-211ENST00000618902 WDR78Q5VTH9 848 aa6.06□□□□□ -1.44
SHMT1-211ENST00000618902 HOMER1Q86YM7 354 aa6.06□□□□□ -1.44
SHMT1-211ENST00000618902 MCF2L2Q86YR7 1114 aa6.06□□□□□ -1.44
SHMT1-211ENST00000618902 TRPV1Q8NER1 839 aa6.06□□□□□ -1.44
SHMT1-211ENST00000618902 DNERQ8NFT8 737 aa6.06□□□□□ -1.44
SHMT1-211ENST00000618902 CTCFLQ8NI51 663 aaPredicted RBP6.06□□□□□ -1.44
SHMT1-211ENST00000618902 TRIB2Q92519 343 aa6.06□□□□□ -1.44
SHMT1-211ENST00000618902 ANP32BQ92688 251 aaKnown RBP6.06□□□□□ -1.44
SHMT1-211ENST00000618902 PHKBQ93100 1093 aa6.06□□□□□ -1.44
SHMT1-211ENST00000618902 DDX11Q96FC9 970 aa6.06□□□□□ -1.44
SHMT1-211ENST00000618902 ZNF274Q96GC6 653 aaPredicted RBP6.06□□□□□ -1.44
SHMT1-211ENST00000618902 MAML3Q96JK9 1138 aa6.06□□□□□ -1.44
SHMT1-211ENST00000618902 TRERF1Q96PN7 1200 aa6.06□□□□□ -1.44
SHMT1-211ENST00000618902 MMP19Q99542 508 aa6.06□□□□□ -1.44
SHMT1-211ENST00000618902 LZTS2Q9BRK4 669 aa6.06□□□□□ -1.44
SHMT1-211ENST00000618902 TINF2Q9BSI4 451 aa6.06□□□□□ -1.44
SHMT1-211ENST00000618902 TSEN34Q9BSV6 310 aaKnown RBP6.06□□□□□ -1.44
SHMT1-211ENST00000618902 ABHD16BQ9H3Z7 469 aa6.06□□□□□ -1.44
SHMT1-211ENST00000618902 SPC25Q9HBM1 224 aa6.06□□□□□ -1.44
SHMT1-211ENST00000618902 COL20A1Q9P218 1284 aa6.06□□□□□ -1.44
SHMT1-211ENST00000618902 CCPG1Q9ULG6 757 aa6.06□□□□□ -1.44
SHMT1-211ENST00000618902 NAP1L2Q9ULW6 460 aaPredicted RBP6.06□□□□□ -1.44
SHMT1-211ENST00000618902 CNPY2Q9Y2B0 182 aa6.06□□□□□ -1.44
SHMT1-211ENST00000618902 PNMA6FA0A0J9YX94 578 aa6.05□□□□□ -1.44
SHMT1-211ENST00000618902 FSD2A1L4K1 749 aa6.05□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms