RNA–Protein interactions for RNA: ENST00000594806.5

TRIM28-204, Transcript of tripartite motif containing 28, humanhuman

TSL 5

Gene TRIM28, Length 861 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-204ENST00000594806 B4DLN1 442 aa29.78■■■□□ 2.36
TRIM28-204ENST00000594806 CAPN15O75808 1086 aa29.78■■■□□ 2.36
TRIM28-204ENST00000594806 SGPL1O95470 568 aa29.78■■■□□ 2.36
TRIM28-204ENST00000594806 CDC27P30260 824 aa29.78■■■□□ 2.36
TRIM28-204ENST00000594806 MRPL12P52815 198 aaKnown RBP29.78■■■□□ 2.36
TRIM28-204ENST00000594806 SOX10P56693 466 aa29.78■■■□□ 2.36
TRIM28-204ENST00000594806 FUT2Q10981 343 aa29.78■■■□□ 2.36
TRIM28-204ENST00000594806 CCDC82Q8N4S0 544 aa29.78■■■□□ 2.36
TRIM28-204ENST00000594806 MPHOSPH6Q99547 160 aaKnown RBP29.78■■■□□ 2.36
TRIM28-204ENST00000594806 RBM27Q9P2N5 1060 aaKnown RBP29.78■■■□□ 2.36
TRIM28-204ENST00000594806 CNTNAP5Q8WYK1 1306 aa29.77■■■□□ 2.36
TRIM28-204ENST00000594806 POTEFA5A3E0 1075 aa29.77■■■□□ 2.36
TRIM28-204ENST00000594806 CALML3P27482 149 aa29.77■■■□□ 2.36
TRIM28-204ENST00000594806 IL27Q8NEV9 243 aa29.77■■■□□ 2.36
TRIM28-204ENST00000594806 LCTP09848 1927 aa29.77■■■□□ 2.36
TRIM28-204ENST00000594806 MCM3APO60318 1980 aa29.76■■■□□ 2.35
TRIM28-204ENST00000594806 CCND3P30281 292 aaPredicted RBP29.76■■■□□ 2.35
TRIM28-204ENST00000594806 ADD1P35611 737 aaKnown RBP29.76■■■□□ 2.35
TRIM28-204ENST00000594806 SLC30A10Q6XR72 485 aa29.76■■■□□ 2.35
TRIM28-204ENST00000594806 ARMCX2Q7L311 632 aa29.76■■■□□ 2.35
TRIM28-204ENST00000594806 U2AF1L4Q8WU68 220 aaKnown RBP29.76■■■□□ 2.35
TRIM28-204ENST00000594806 PIBF1Q8WXW3 757 aa29.76■■■□□ 2.35
TRIM28-204ENST00000594806 DEFB118Q96PH6 123 aa29.76■■■□□ 2.35
TRIM28-204ENST00000594806 ABHD16BQ9H3Z7 469 aa29.76■■■□□ 2.35
TRIM28-204ENST00000594806 CENPFP49454 3210 aa29.76■■■□□ 2.35
TRIM28-204ENST00000594806 hCG_1984214I3L0E3 225 aa29.75■■■□□ 2.35
TRIM28-204ENST00000594806 SNAI1O95863 264 aaPredicted RBP29.75■■■□□ 2.35
TRIM28-204ENST00000594806 HSD17B4P51659 736 aa29.75■■■□□ 2.35
TRIM28-204ENST00000594806 NEK4P51957 841 aa29.75■■■□□ 2.35
TRIM28-204ENST00000594806 ZNF713Q8N859 430 aaPredicted RBP29.75■■■□□ 2.35
TRIM28-204ENST00000594806 MORC4Q8TE76 937 aa29.75■■■□□ 2.35
TRIM28-204ENST00000594806 CRISPLD2Q9H0B8 497 aa29.75■■■□□ 2.35
TRIM28-204ENST00000594806 CDKN2AIPQ9NXV6 580 aaPredicted RBP29.75■■■□□ 2.35
TRIM28-204ENST00000594806 SEPT4O43236 478 aa29.74■■■□□ 2.35
TRIM28-204ENST00000594806 CFBP00751 764 aa29.74■■■□□ 2.35
TRIM28-204ENST00000594806 RGS19P49795 217 aa29.74■■■□□ 2.35
TRIM28-204ENST00000594806 ALDH5A1P51649 535 aaPredicted RBP29.74■■■□□ 2.35
TRIM28-204ENST00000594806 TEX2Q8IWB9 1127 aa29.74■■■□□ 2.35
TRIM28-204ENST00000594806 TRPV1Q8NER1 839 aa29.74■■■□□ 2.35
TRIM28-204ENST00000594806 SYTL5Q8TDW5 730 aaPredicted RBP29.74■■■□□ 2.35
TRIM28-204ENST00000594806 V9GY48 417 aaPredicted RBP29.74■■■□□ 2.35
TRIM28-204ENST00000594806 OPLAHO14841 1288 aa29.73■■■□□ 2.35
TRIM28-204ENST00000594806 CNGA1P29973 690 aa29.73■■■□□ 2.35
TRIM28-204ENST00000594806 TBC1D5Q92609 795 aa29.73■■■□□ 2.35
TRIM28-204ENST00000594806 DDX20Q9UHI6 824 aaKnown RBP29.73■■■□□ 2.35
TRIM28-204ENST00000594806 GCOM1H8Y6P7 765 aaPredicted RBP29.72■■■□□ 2.35
TRIM28-204ENST00000594806 POLR2MP0CAP2 368 aa29.72■■■□□ 2.35
TRIM28-204ENST00000594806 ZNF865P0CJ78 1059 aaPredicted RBP29.72■■■□□ 2.35
TRIM28-204ENST00000594806 IFNAR1P17181 557 aa29.72■■■□□ 2.35
TRIM28-204ENST00000594806 AK2P54819 239 aa29.72■■■□□ 2.35
TRIM28-204ENST00000594806 PRAMEF19Q5SWL8 479 aa29.72■■■□□ 2.35
TRIM28-204ENST00000594806 CPLX2Q6PUV4 134 aaKnown RBP29.72■■■□□ 2.35
TRIM28-204ENST00000594806 NSUN6Q8TEA1 469 aaKnown RBP29.72■■■□□ 2.35
TRIM28-204ENST00000594806 ASTN1O14525 1302 aa29.71■■■□□ 2.35
TRIM28-204ENST00000594806 TFRCP02786 760 aaKnown RBP29.71■■■□□ 2.35
TRIM28-204ENST00000594806 EN2P19622 333 aaPredicted RBP29.71■■■□□ 2.35
TRIM28-204ENST00000594806 CCT2P78371 535 aaKnown RBP29.71■■■□□ 2.35
TRIM28-204ENST00000594806 AKAP17AQ02040 695 aaKnown RBP29.71■■■□□ 2.35
TRIM28-204ENST00000594806 ACVR2BQ13705 512 aa29.71■■■□□ 2.35
TRIM28-204ENST00000594806 NTRK3Q16288 839 aa29.71■■■□□ 2.35
TRIM28-204ENST00000594806 IWS1Q96ST2 819 aa29.71■■■□□ 2.35
TRIM28-204ENST00000594806 RNF26Q9BY78 433 aaPredicted RBP29.71■■■□□ 2.35
TRIM28-204ENST00000594806 PRPF3O43395 683 aaKnown RBP29.7■■■□□ 2.35
TRIM28-204ENST00000594806 AKR1A1P14550 325 aa29.7■■■□□ 2.35
TRIM28-204ENST00000594806 LHX8Q68G74 356 aa29.7■■■□□ 2.35
TRIM28-204ENST00000594806 PPP1R18Q6NYC8 613 aa29.7■■■□□ 2.35
TRIM28-204ENST00000594806 ANKLE1Q8NAG6 615 aa29.7■■■□□ 2.35
TRIM28-204ENST00000594806 CUL5Q93034 780 aa29.7■■■□□ 2.35
TRIM28-204ENST00000594806 PURBQ96QR8 312 aaKnown RBP29.7■■■□□ 2.35
TRIM28-204ENST00000594806 SLKQ9H2G2 1235 aaPredicted RBP29.7■■■□□ 2.35
TRIM28-204ENST00000594806 OGDHLQ9ULD0 1010 aa29.7■■■□□ 2.35
TRIM28-204ENST00000594806 PIK3CDO00329 1044 aa29.69■■■□□ 2.34
TRIM28-204ENST00000594806 CPLX1O14810 134 aa29.69■■■□□ 2.34
TRIM28-204ENST00000594806 EDNRBP24530 442 aa29.69■■■□□ 2.34
TRIM28-204ENST00000594806 HEATR3Q7Z4Q2 680 aa29.69■■■□□ 2.34
TRIM28-204ENST00000594806 KIF2CQ99661 725 aa29.69■■■□□ 2.34
TRIM28-204ENST00000594806 BACH2Q9BYV9 841 aa29.69■■■□□ 2.34
TRIM28-204ENST00000594806 VTA1Q9NP79 307 aa29.69■■■□□ 2.34
TRIM28-204ENST00000594806 FAM184BQ9ULE4 1060 aa29.69■■■□□ 2.34
TRIM28-204ENST00000594806 TPCN1Q9ULQ1 816 aa29.69■■■□□ 2.34
TRIM28-204ENST00000594806 hCG_1642624A0A1W2PR95 340 aa29.68■■■□□ 2.34
TRIM28-204ENST00000594806 PFKFB2O60825 505 aa29.68■■■□□ 2.34
TRIM28-204ENST00000594806 PFKFB3Q16875 520 aaPredicted RBP29.68■■■□□ 2.34
TRIM28-204ENST00000594806 SHISA4Q96DD7 197 aa29.68■■■□□ 2.34
TRIM28-204ENST00000594806 TAAR1Q96RJ0 339 aa29.68■■■□□ 2.34
TRIM28-204ENST00000594806 RMDN3Q96TC7 470 aa29.68■■■□□ 2.34
TRIM28-204ENST00000594806 LARP6Q9BRS8 491 aaKnown RBP29.68■■■□□ 2.34
TRIM28-204ENST00000594806 KATNBL1Q9H079 304 aa29.68■■■□□ 2.34
TRIM28-204ENST00000594806 GLT8D2Q9H1C3 349 aa29.68■■■□□ 2.34
TRIM28-204ENST00000594806 COL20A1Q9P218 1284 aa29.68■■■□□ 2.34
TRIM28-204ENST00000594806 ZHX1Q9UKY1 873 aaPredicted RBP29.68■■■□□ 2.34
TRIM28-204ENST00000594806 TRIM22Q8IYM9 498 aa29.67■■■□□ 2.34
TRIM28-204ENST00000594806 PSTPIP2Q9H939 334 aa29.67■■■□□ 2.34
TRIM28-204ENST00000594806 NCOA5Q9HCD5 579 aaKnown RBP29.67■■■□□ 2.34
TRIM28-204ENST00000594806 FRMPD3Q5JV73 1810 aa29.66■■■□□ 2.34
TRIM28-204ENST00000594806 CDKL5O76039 1030 aa29.66■■■□□ 2.34
TRIM28-204ENST00000594806 SCG2P13521 617 aa29.66■■■□□ 2.34
TRIM28-204ENST00000594806 PDE4DQ08499 809 aa29.66■■■□□ 2.34
TRIM28-204ENST00000594806 RABEP1Q15276 862 aa29.66■■■□□ 2.34
TRIM28-204ENST00000594806 ARHGEF16Q5VV41 709 aa29.66■■■□□ 2.34
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms