RNA–Protein interactions for RNA: ENST00000581021.5

SS18-218, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 588 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-218ENST00000581021 ASB14A6NK59 587 aa23.35■■□□□ 1.33
SS18-218ENST00000581021 PGK1P00558 417 aa23.35■■□□□ 1.33
SS18-218ENST00000581021 HMGB1P09429 215 aaKnown RBP23.35■■□□□ 1.33
SS18-218ENST00000581021 RPS6KB1P23443 525 aa23.35■■□□□ 1.33
SS18-218ENST00000581021 KIF5BP33176 963 aa23.35■■□□□ 1.33
SS18-218ENST00000581021 TMEM63BQ5T3F8 832 aa23.35■■□□□ 1.33
SS18-218ENST00000581021 TMTC3Q6ZXV5 915 aa23.35■■□□□ 1.33
SS18-218ENST00000581021 FANCBQ8NB91 859 aa23.35■■□□□ 1.33
SS18-218ENST00000581021 XPNPEP3Q9NQH7 507 aa23.35■■□□□ 1.33
SS18-218ENST00000581021 PDGFCQ9NRA1 345 aa23.35■■□□□ 1.33
SS18-218ENST00000581021 MRPL11Q9Y3B7 192 aaKnown RBP23.35■■□□□ 1.33
SS18-218ENST00000581021 DNAH12Q6ZR08 3092 aa23.35■■□□□ 1.33
SS18-218ENST00000581021 CEP290O15078 2479 aa23.35■■□□□ 1.33
SS18-218ENST00000581021 DNM1LO00429 736 aa23.34■■□□□ 1.33
SS18-218ENST00000581021 ADAMTS4O75173 837 aa23.34■■□□□ 1.33
SS18-218ENST00000581021 CALM1P0DP23 149 aa23.34■■□□□ 1.33
SS18-218ENST00000581021 CALM2P0DP24 149 aa23.34■■□□□ 1.33
SS18-218ENST00000581021 CALM3P0DP25 149 aa23.34■■□□□ 1.33
SS18-218ENST00000581021 RARBP10826 455 aa23.34■■□□□ 1.33
SS18-218ENST00000581021 EDNRBP24530 442 aa23.34■■□□□ 1.33
SS18-218ENST00000581021 GHRHRQ02643 423 aa23.34■■□□□ 1.33
SS18-218ENST00000581021 LRRC41Q15345 812 aa23.34■■□□□ 1.33
SS18-218ENST00000581021 TAPT1Q6NXT6 567 aa23.34■■□□□ 1.33
SS18-218ENST00000581021 BLOC1S2Q6QNY1 142 aa23.34■■□□□ 1.33
SS18-218ENST00000581021 Q6ZUG5 572 aa23.34■■□□□ 1.33
SS18-218ENST00000581021 EEPD1Q7L9B9 569 aa23.34■■□□□ 1.33
SS18-218ENST00000581021 FAM217BQ9NTX9 383 aaPredicted RBP23.34■■□□□ 1.33
SS18-218ENST00000581021 SYNRGQ9UMZ2 1314 aa23.33■■□□□ 1.33
SS18-218ENST00000581021 KLF18A0A0U1RQI7 1052 aa23.33■■□□□ 1.33
SS18-218ENST00000581021 hCG_1642624A0A1W2PR95 340 aa23.33■■□□□ 1.33
SS18-218ENST00000581021 MYADML2A6NDP7 307 aa23.33■■□□□ 1.33
SS18-218ENST00000581021 CASTP20810 708 aaKnown RBP23.33■■□□□ 1.33
SS18-218ENST00000581021 ADCYAP1R1P41586 468 aa23.33■■□□□ 1.33
SS18-218ENST00000581021 HSD17B4P51659 736 aa23.33■■□□□ 1.33
SS18-218ENST00000581021 FUT2Q10981 343 aa23.33■■□□□ 1.33
SS18-218ENST00000581021 TAAR1Q96RJ0 339 aa23.33■■□□□ 1.33
SS18-218ENST00000581021 ADD3Q9UEY8 706 aaKnown RBP23.33■■□□□ 1.33
SS18-218ENST00000581021 FAM184BQ9ULE4 1060 aa23.33■■□□□ 1.33
SS18-218ENST00000581021 SEC24BO95487 1268 aa23.32■■□□□ 1.32
SS18-218ENST00000581021 SMARCA1P28370 1054 aa23.32■■□□□ 1.32
SS18-218ENST00000581021 APOBRQ0VD83 1088 aa23.32■■□□□ 1.32
SS18-218ENST00000581021 BRF1Q92994 677 aa23.32■■□□□ 1.32
SS18-218ENST00000581021 LZTS2Q9BRK4 669 aa23.32■■□□□ 1.32
SS18-218ENST00000581021 HTATIP2Q9BUP3 242 aa23.32■■□□□ 1.32
SS18-218ENST00000581021 AGXT2Q9BYV1 514 aa23.32■■□□□ 1.32
SS18-218ENST00000581021 CNTNAP5Q8WYK1 1306 aa23.32■■□□□ 1.32
SS18-218ENST00000581021 ZBTB43O43298 467 aa23.31■■□□□ 1.32
SS18-218ENST00000581021 CFBP00751 764 aa23.31■■□□□ 1.32
SS18-218ENST00000581021 MYCNP04198 464 aaPredicted RBP23.31■■□□□ 1.32
SS18-218ENST00000581021 HOXA13P31271 388 aaPredicted RBP23.31■■□□□ 1.32
SS18-218ENST00000581021 GNAQP50148 359 aa23.31■■□□□ 1.32
SS18-218ENST00000581021 MCF2L2Q86YR7 1114 aa23.31■■□□□ 1.32
SS18-218ENST00000581021 CCDC82Q8N4S0 544 aa23.31■■□□□ 1.32
SS18-218ENST00000581021 ZSWIM6Q9HCJ5 1215 aa23.31■■□□□ 1.32
SS18-218ENST00000581021 PCDH10Q9P2E7 1040 aa23.31■■□□□ 1.32
SS18-218ENST00000581021 CTAGE5O15320 804 aa23.3■■□□□ 1.32
SS18-218ENST00000581021 DUSP11O75319 330 aaKnown RBP23.3■■□□□ 1.32
SS18-218ENST00000581021 SMPD1P17405 629 aa23.3■■□□□ 1.32
SS18-218ENST00000581021 CDC27P30260 824 aa23.3■■□□□ 1.32
SS18-218ENST00000581021 RTN1Q16799 776 aa23.3■■□□□ 1.32
SS18-218ENST00000581021 LRRC26Q2I0M4 334 aa23.3■■□□□ 1.32
SS18-218ENST00000581021 PRPF38BQ5VTL8 546 aaKnown RBP23.3■■□□□ 1.32
SS18-218ENST00000581021 FBXL16Q8N461 479 aa23.3■■□□□ 1.32
SS18-218ENST00000581021 ARRDC4Q8NCT1 418 aa23.3■■□□□ 1.32
SS18-218ENST00000581021 DNERQ8NFT8 737 aa23.3■■□□□ 1.32
SS18-218ENST00000581021 DPF3Q92784 378 aa23.3■■□□□ 1.32
SS18-218ENST00000581021 RRP36Q96EU6 259 aaKnown RBP23.3■■□□□ 1.32
SS18-218ENST00000581021 UPF3BQ9BZI7 483 aaKnown RBP23.3■■□□□ 1.32
SS18-218ENST00000581021 VTA1Q9NP79 307 aa23.3■■□□□ 1.32
SS18-218ENST00000581021 GNEQ9Y223 722 aaKnown RBP23.3■■□□□ 1.32
SS18-218ENST00000581021 LOC102724159A0A0B4J2E5 919 aa23.29■■□□□ 1.32
SS18-218ENST00000581021 GOLGA8AA7E2F4 631 aa23.29■■□□□ 1.32
SS18-218ENST00000581021 GOLGA8BA8MQT2 603 aa23.29■■□□□ 1.32
SS18-218ENST00000581021 H0YGN5 161 aa23.29■■□□□ 1.32
SS18-218ENST00000581021 PSMA5P28066 241 aa23.29■■□□□ 1.32
SS18-218ENST00000581021 PWP2Q15269 919 aaKnown RBP23.29■■□□□ 1.32
SS18-218ENST00000581021 CCSAPQ6IQ19 270 aaPredicted RBP23.29■■□□□ 1.32
SS18-218ENST00000581021 RUFY3Q7L099 469 aa23.29■■□□□ 1.32
SS18-218ENST00000581021 KLHDC9Q8NEP7 349 aa23.29■■□□□ 1.32
SS18-218ENST00000581021 SENP6Q9GZR1 1112 aaPredicted RBP23.29■■□□□ 1.32
SS18-218ENST00000581021 MAF1Q9H063 256 aa23.29■■□□□ 1.32
SS18-218ENST00000581021 UPF3AQ9H1J1 476 aaKnown RBP23.29■■□□□ 1.32
SS18-218ENST00000581021 NID2Q14112 1375 aa23.28■■□□□ 1.32
SS18-218ENST00000581021 TNFAIP2Q03169 654 aa23.28■■□□□ 1.32
SS18-218ENST00000581021 TOB2Q14106 344 aaPredicted RBP23.28■■□□□ 1.32
SS18-218ENST00000581021 SYNE3Q6ZMZ3 975 aa23.28■■□□□ 1.32
SS18-218ENST00000581021 RMDN3Q96TC7 470 aa23.28■■□□□ 1.32
SS18-218ENST00000581021 PHF24Q9UPV7 400 aa23.28■■□□□ 1.32
SS18-218ENST00000581021 KBTBD13C9JR72 458 aa23.27■■□□□ 1.32
SS18-218ENST00000581021 EIF2AK2P19525 551 aaKnown RBP23.27■■□□□ 1.32
SS18-218ENST00000581021 RCAN1P53805 252 aa23.27■■□□□ 1.32
SS18-218ENST00000581021 FGD1P98174 961 aa23.27■■□□□ 1.32
SS18-218ENST00000581021 PDE4DQ08499 809 aa23.27■■□□□ 1.32
SS18-218ENST00000581021 IL31RAQ8NI17 732 aa23.27■■□□□ 1.32
SS18-218ENST00000581021 FERMT2Q96AC1 680 aa23.27■■□□□ 1.32
SS18-218ENST00000581021 TM6SF1Q9BZW5 370 aa23.27■■□□□ 1.32
SS18-218ENST00000581021 PXMP2Q9NR77 195 aa23.27■■□□□ 1.32
SS18-218ENST00000581021 RBM28Q9NW13 759 aaKnown RBP23.27■■□□□ 1.32
SS18-218ENST00000581021 RBM47A0AV96 593 aaKnown RBP23.26■■□□□ 1.31
SS18-218ENST00000581021 ATN1P54259 1190 aaPredicted RBP23.26■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms