RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 SMC5Q8IY18 1101 aa7.94□□□□□ -1.14
VPS53-213ENST00000572334 USP38Q8NB14 1042 aa7.94□□□□□ -1.14
VPS53-213ENST00000572334 MAFAQ8NHW3 353 aaPredicted RBP7.94□□□□□ -1.14
VPS53-213ENST00000572334 LNPKQ9C0E8 428 aa7.94□□□□□ -1.14
VPS53-213ENST00000572334 CCPG1Q9ULG6 757 aa7.94□□□□□ -1.14
VPS53-213ENST00000572334 MTMR7Q9Y216 660 aa7.94□□□□□ -1.14
VPS53-213ENST00000572334 NEDD4P46934 1319 aa7.94□□□□□ -1.14
VPS53-213ENST00000572334 MROH7Q68CQ1 1323 aa7.94□□□□□ -1.14
VPS53-213ENST00000572334 FRMPD2Q68DX3 1309 aaPredicted RBP7.94□□□□□ -1.14
VPS53-213ENST00000572334 HSFX4A0A1B0GTS1 333 aaPredicted RBP7.93□□□□□ -1.14
VPS53-213ENST00000572334 HSFX3A0A1B0GWH4 333 aaPredicted RBP7.93□□□□□ -1.14
VPS53-213ENST00000572334 DYNC1LI2O43237 492 aaPredicted RBP7.93□□□□□ -1.14
VPS53-213ENST00000572334 B4GALT4O60513 344 aa7.93□□□□□ -1.14
VPS53-213ENST00000572334 NEFLP07196 543 aa7.93□□□□□ -1.14
VPS53-213ENST00000572334 ALDH5A1P51649 535 aaPredicted RBP7.93□□□□□ -1.14
VPS53-213ENST00000572334 PSMC6P62333 389 aa7.93□□□□□ -1.14
VPS53-213ENST00000572334 ZNF543Q08ER8 600 aa7.93□□□□□ -1.14
VPS53-213ENST00000572334 IKQ13123 557 aaPredicted RBP7.93□□□□□ -1.14
VPS53-213ENST00000572334 FSCN1Q16658 493 aaKnown RBP7.93□□□□□ -1.14
VPS53-213ENST00000572334 CCDC96Q2M329 555 aa7.93□□□□□ -1.14
VPS53-213ENST00000572334 RRP12Q5JTH9 1297 aaKnown RBP7.93□□□□□ -1.14
VPS53-213ENST00000572334 PPP4R3BQ5MIZ7 849 aa7.93□□□□□ -1.14
VPS53-213ENST00000572334 AKNAD1Q5T1N1 836 aa7.93□□□□□ -1.14
VPS53-213ENST00000572334 IQSEC1Q6DN90 963 aa7.93□□□□□ -1.14
VPS53-213ENST00000572334 NSMFQ6X4W1 530 aa7.93□□□□□ -1.14
VPS53-213ENST00000572334 SLC30A10Q6XR72 485 aa7.93□□□□□ -1.14
VPS53-213ENST00000572334 ZNF365Q70YC5 407 aa7.93□□□□□ -1.14
VPS53-213ENST00000572334 TICAM2Q86XR7 235 aa7.93□□□□□ -1.14
VPS53-213ENST00000572334 PLEKHM2Q8IWE5 1019 aa7.93□□□□□ -1.14
VPS53-213ENST00000572334 NOC4LQ9BVI4 516 aaKnown RBP7.93□□□□□ -1.14
VPS53-213ENST00000572334 PBX4Q9BYU1 374 aa7.93□□□□□ -1.14
VPS53-213ENST00000572334 PPP1R12CQ9BZL4 782 aa7.93□□□□□ -1.14
VPS53-213ENST00000572334 WNT8AQ9H1J5 351 aa7.93□□□□□ -1.14
VPS53-213ENST00000572334 IL25Q9H293 177 aa7.93□□□□□ -1.14
VPS53-213ENST00000572334 CPVLQ9H3G5 476 aa7.93□□□□□ -1.14
VPS53-213ENST00000572334 OSBPL3Q9H4L5 887 aa7.93□□□□□ -1.14
VPS53-213ENST00000572334 SPC25Q9HBM1 224 aa7.93□□□□□ -1.14
VPS53-213ENST00000572334 VTA1Q9NP79 307 aa7.93□□□□□ -1.14
VPS53-213ENST00000572334 GPCPD1Q9NPB8 672 aa7.93□□□□□ -1.14
VPS53-213ENST00000572334 CXXC1Q9P0U4 656 aaPredicted RBP7.93□□□□□ -1.14
VPS53-213ENST00000572334 ISY1Q9ULR0 285 aaKnown RBP7.93□□□□□ -1.14
VPS53-213ENST00000572334 Q9Y3F1 56 aa7.93□□□□□ -1.14
VPS53-213ENST00000572334 SUPT16HQ9Y5B9 1047 aaKnown RBP7.93□□□□□ -1.14
VPS53-213ENST00000572334 CCDC171Q6TFL3 1326 aa7.93□□□□□ -1.14
VPS53-213ENST00000572334 DOCK5Q9H7D0 1870 aa7.93□□□□□ -1.14
VPS53-213ENST00000572334 TCF20Q9UGU0 1960 aaKnown RBP7.93□□□□□ -1.14
VPS53-213ENST00000572334 XIRP2A4UGR9 3374 aa7.93□□□□□ -1.14
VPS53-213ENST00000572334 RBAK-RBAKDNI3L0D1 243 aa7.92□□□□□ -1.14
VPS53-213ENST00000572334 FOSL2P15408 326 aa7.92□□□□□ -1.14
VPS53-213ENST00000572334 SDSP20132 328 aa7.92□□□□□ -1.14
VPS53-213ENST00000572334 EDNRBP24530 442 aa7.92□□□□□ -1.14
VPS53-213ENST00000572334 PPIGQ13427 754 aaKnown RBP eCLIP7.92□□□□□ -1.147e-7■■□□□ 11.9
VPS53-213ENST00000572334 ITGA7Q13683 1181 aa7.92□□□□□ -1.14
VPS53-213ENST00000572334 DUSP28Q4G0W2 176 aa7.92□□□□□ -1.14
VPS53-213ENST00000572334 HERVK_113Q902F9 699 aa7.92□□□□□ -1.14
VPS53-213ENST00000572334 VTI1AQ96AJ9 217 aa7.92□□□□□ -1.14
VPS53-213ENST00000572334 YTHDC1Q96MU7 727 aaKnown RBP7.92□□□□□ -1.14
VPS53-213ENST00000572334 TTC14Q96N46 770 aa7.92□□□□□ -1.14
VPS53-213ENST00000572334 TRPV6Q9H1D0 765 aa7.92□□□□□ -1.14
VPS53-213ENST00000572334 ZNF576Q9H609 170 aa7.92□□□□□ -1.14
VPS53-213ENST00000572334 IL23AQ9NPF7 189 aa7.92□□□□□ -1.14
VPS53-213ENST00000572334 LOC102724159A0A0B4J2E5 919 aa7.91□□□□□ -1.14
VPS53-213ENST00000572334 CABYRO75952 493 aa7.91□□□□□ -1.14
VPS53-213ENST00000572334 ARIH2O95376 493 aa7.91□□□□□ -1.14
VPS53-213ENST00000572334 RPS6P62753 249 aaKnown RBP7.91□□□□□ -1.14
VPS53-213ENST00000572334 PURAQ00577 322 aaKnown RBP7.91□□□□□ -1.14
VPS53-213ENST00000572334 NUCB1Q02818 461 aa7.91□□□□□ -1.14
VPS53-213ENST00000572334 ADGRE1Q14246 886 aa7.91□□□□□ -1.14
VPS53-213ENST00000572334 PWP2Q15269 919 aaKnown RBP7.91□□□□□ -1.14
VPS53-213ENST00000572334 B4GALNT3Q6L9W6 998 aa7.91□□□□□ -1.14
VPS53-213ENST00000572334 KIAA1211Q6ZU35 1233 aa7.91□□□□□ -1.14
VPS53-213ENST00000572334 TMEM199Q8N511 208 aa7.91□□□□□ -1.14
VPS53-213ENST00000572334 PPP1R13LQ8WUF5 828 aa7.91□□□□□ -1.14
VPS53-213ENST00000572334 TBC1D5Q92609 795 aa7.91□□□□□ -1.14
VPS53-213ENST00000572334 ANKS1AQ92625 1134 aa7.91□□□□□ -1.14
VPS53-213ENST00000572334 COPS5Q92905 334 aa7.91□□□□□ -1.14
VPS53-213ENST00000572334 TIFAQ96CG3 184 aa7.91□□□□□ -1.14
VPS53-213ENST00000572334 CTAGE1Q96RT6 745 aa7.91□□□□□ -1.14
VPS53-213ENST00000572334 ZKSCAN3Q9BRR0 538 aa7.91□□□□□ -1.14
VPS53-213ENST00000572334 WDR11Q9BZH6 1224 aa7.91□□□□□ -1.14
VPS53-213ENST00000572334 AP5M1Q9H0R1 490 aa7.91□□□□□ -1.14
VPS53-213ENST00000572334 ALDH8A1Q9H2A2 487 aaPredicted RBP7.91□□□□□ -1.14
VPS53-213ENST00000572334 HIPK3Q9H422 1215 aa7.91□□□□□ -1.14
VPS53-213ENST00000572334 PRDM6Q9NQX0 595 aa7.91□□□□□ -1.14
VPS53-213ENST00000572334 TSHZ2Q9NRE2 1034 aa7.91□□□□□ -1.14
VPS53-213ENST00000572334 TOMM22Q9NS69 142 aa7.91□□□□□ -1.14
VPS53-213ENST00000572334 COL20A1Q9P218 1284 aa7.91□□□□□ -1.14
VPS53-213ENST00000572334 YBX2Q9Y2T7 364 aaKnown RBP7.91□□□□□ -1.14
VPS53-213ENST00000572334 WDR19Q8NEZ3 1342 aa7.91□□□□□ -1.14
VPS53-213ENST00000572334 TRIM6-TRIM34B2RNG4 842 aa7.9□□□□□ -1.14
VPS53-213ENST00000572334 TLR3O15455 904 aaKnown RBP7.9□□□□□ -1.14
VPS53-213ENST00000572334 GOLGA8HP0CJ92 632 aa7.9□□□□□ -1.14
VPS53-213ENST00000572334 PCP11498 1178 aaKnown RBP7.9□□□□□ -1.14
VPS53-213ENST00000572334 CCL23P55773 120 aa7.9□□□□□ -1.14
VPS53-213ENST00000572334 PSRC1Q6PGN9 363 aaPredicted RBP7.9□□□□□ -1.14
VPS53-213ENST00000572334 RNF207Q6ZRF8 634 aa7.9□□□□□ -1.14
VPS53-213ENST00000572334 MFSD6Q6ZSS7 791 aa7.9□□□□□ -1.14
VPS53-213ENST00000572334 NOL8Q76FK4 1167 aaKnown RBP7.9□□□□□ -1.14
VPS53-213ENST00000572334 CHD1LQ86WJ1 897 aa7.9□□□□□ -1.14
VPS53-213ENST00000572334 RILPL2Q969X0 211 aa7.9□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 74.7 ms