RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 SYDE2Q5VT97 1194 aa19.03■□□□□ 0.64
LDLR-206ENST00000557958 ISM2Q6H9L7 571 aa19.03■□□□□ 0.64
LDLR-206ENST00000557958 ZC3H15Q8WU90 426 aaKnown RBP19.03■□□□□ 0.64
LDLR-206ENST00000557958 NAP1L5Q96NT1 182 aaPredicted RBP19.03■□□□□ 0.64
LDLR-206ENST00000557958 AMNQ9BXJ7 453 aa19.03■□□□□ 0.64
LDLR-206ENST00000557958 CCSER1Q9C0I3 900 aa19.03■□□□□ 0.64
LDLR-206ENST00000557958 PRR29P0C7W0 189 aa19.03■□□□□ 0.64
LDLR-206ENST00000557958 GCFC2P16383 781 aaKnown RBP19.03■□□□□ 0.64
LDLR-206ENST00000557958 STAT6P42226 847 aa19.03■□□□□ 0.64
LDLR-206ENST00000557958 AFMP43652 599 aa19.03■□□□□ 0.64
LDLR-206ENST00000557958 TTLL12Q14166 644 aaPredicted RBP19.03■□□□□ 0.64
LDLR-206ENST00000557958 E2F4Q16254 413 aa19.03■□□□□ 0.64
LDLR-206ENST00000557958 TMEM266Q2M3C6 531 aa19.03■□□□□ 0.64
LDLR-206ENST00000557958 SAMD1Q6SPF0 538 aaPredicted RBP19.03■□□□□ 0.64
LDLR-206ENST00000557958 BTNL9Q6UXG8 535 aa19.03■□□□□ 0.64
LDLR-206ENST00000557958 TEX2Q8IWB9 1127 aa19.03■□□□□ 0.64
LDLR-206ENST00000557958 SPC24Q8NBT2 197 aa19.03■□□□□ 0.64
LDLR-206ENST00000557958 RAB34Q9BZG1 259 aa19.03■□□□□ 0.64
LDLR-206ENST00000557958 TMEM60Q9H2L4 133 aa19.03■□□□□ 0.64
LDLR-206ENST00000557958 CUEDC2Q9H467 287 aa19.03■□□□□ 0.64
LDLR-206ENST00000557958 MAGEF1Q9HAY2 307 aa19.03■□□□□ 0.64
LDLR-206ENST00000557958 PICK1Q9NRD5 415 aa19.03■□□□□ 0.64
LDLR-206ENST00000557958 DISC1Q9NRI5 854 aa19.03■□□□□ 0.64
LDLR-206ENST00000557958 TMX2Q9Y320 296 aa19.03■□□□□ 0.64
LDLR-206ENST00000557958 POLR2AP24928 1970 aaKnown RBP19.03■□□□□ 0.64
LDLR-206ENST00000557958 TMEM232C9JQI7 657 aa19.02■□□□□ 0.64
LDLR-206ENST00000557958 MYL1P05976 194 aa19.02■□□□□ 0.64
LDLR-206ENST00000557958 CLK2P49760 499 aaKnown RBP19.02■□□□□ 0.64
LDLR-206ENST00000557958 GRAMD1CQ8IYS0 662 aa19.02■□□□□ 0.64
LDLR-206ENST00000557958 TMEM260Q9NX78 707 aa19.02■□□□□ 0.64
LDLR-206ENST00000557958 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP19.02■□□□□ 0.64
LDLR-206ENST00000557958 CALCRLQ16602 461 aa19.01■□□□□ 0.63
LDLR-206ENST00000557958 RRAGBQ5VZM2 374 aa19.01■□□□□ 0.63
LDLR-206ENST00000557958 MAP1SQ66K74 1059 aaPredicted RBP19.01■□□□□ 0.63
LDLR-206ENST00000557958 PPP4R3AQ6IN85 833 aa19.01■□□□□ 0.63
LDLR-206ENST00000557958 FBXO11Q86XK2 927 aa19.01■□□□□ 0.63
LDLR-206ENST00000557958 RMND1Q9NWS8 449 aa19.01■□□□□ 0.63
LDLR-206ENST00000557958 GTPBP6O43824 516 aaPredicted RBP19.01■□□□□ 0.63
LDLR-206ENST00000557958 PPP1R12BO60237 982 aaPredicted RBP19.01■□□□□ 0.63
LDLR-206ENST00000557958 ZNF500O60304 480 aaPredicted RBP19.01■□□□□ 0.63
LDLR-206ENST00000557958 USP2O75604 605 aaPredicted RBP19.01■□□□□ 0.63
LDLR-206ENST00000557958 NF2P35240 595 aa19.01■□□□□ 0.63
LDLR-206ENST00000557958 STAT2P52630 851 aa19.01■□□□□ 0.63
LDLR-206ENST00000557958 DPYDQ12882 1025 aa19.01■□□□□ 0.63
LDLR-206ENST00000557958 AP3B2Q13367 1082 aa19.01■□□□□ 0.63
LDLR-206ENST00000557958 PDXDC2PQ6P474 469 aa19.01■□□□□ 0.63
LDLR-206ENST00000557958 SCYL3Q8IZE3 742 aa19.01■□□□□ 0.63
LDLR-206ENST00000557958 KLRG1Q96E93 195 aa19.01■□□□□ 0.63
LDLR-206ENST00000557958 CDCA5Q96FF9 252 aa19.01■□□□□ 0.63
LDLR-206ENST00000557958 ZNF408Q9H9D4 720 aa19.01■□□□□ 0.63
LDLR-206ENST00000557958 ERCC5P28715 1186 aaPredicted RBP19■□□□□ 0.63
LDLR-206ENST00000557958 SEMA3FQ13275 785 aa19■□□□□ 0.63
LDLR-206ENST00000557958 NCAPHQ15003 741 aa19■□□□□ 0.63
LDLR-206ENST00000557958 KIAA1755Q5JYT7 1200 aa19■□□□□ 0.63
LDLR-206ENST00000557958 GINM1Q9NU53 330 aa19■□□□□ 0.63
LDLR-206ENST00000557958 ZNF112Q9UJU3 913 aa19■□□□□ 0.63
LDLR-206ENST00000557958 CBFA2T2O43439 604 aa18.99■□□□□ 0.63
LDLR-206ENST00000557958 DHX8Q14562 1220 aaKnown RBP18.99■□□□□ 0.63
LDLR-206ENST00000557958 CHURC1Q8WUH1 139 aa18.99■□□□□ 0.63
LDLR-206ENST00000557958 ZHX2Q9Y6X8 837 aa18.99■□□□□ 0.63
LDLR-206ENST00000557958 SPP2Q13103 211 aa18.99■□□□□ 0.63
LDLR-206ENST00000557958 DGKZQ13574 1117 aa18.99■□□□□ 0.63
LDLR-206ENST00000557958 KARSQ15046 597 aaKnown RBP18.99■□□□□ 0.63
LDLR-206ENST00000557958 UBE2SQ16763 222 aa18.99■□□□□ 0.63
LDLR-206ENST00000557958 FAM83BQ5T0W9 1011 aa18.99■□□□□ 0.63
LDLR-206ENST00000557958 MOB2Q70IA6 237 aa18.99■□□□□ 0.63
LDLR-206ENST00000557958 CABP7Q86V35 215 aa18.99■□□□□ 0.63
LDLR-206ENST00000557958 EIF2AK3Q9NZJ5 1116 aaKnown RBP18.99■□□□□ 0.63
LDLR-206ENST00000557958 SSC5DA1L4H1 1573 aa18.98■□□□□ 0.63
LDLR-206ENST00000557958 FOSP01100 380 aaPredicted RBP18.98■□□□□ 0.63
LDLR-206ENST00000557958 PTPRAP18433 802 aa18.98■□□□□ 0.63
LDLR-206ENST00000557958 BMP6P22004 513 aa18.98■□□□□ 0.63
LDLR-206ENST00000557958 FXR2P51116 673 aaKnown RBP eCLIP18.98■□□□□ 0.63
LDLR-206ENST00000557958 SNAP25P60880 206 aa18.98■□□□□ 0.63
LDLR-206ENST00000557958 POTEDQ86YR6 584 aa18.98■□□□□ 0.63
LDLR-206ENST00000557958 ENOX1Q8TC92 643 aaKnown RBP18.98■□□□□ 0.63
LDLR-206ENST00000557958 CALML4Q96GE6 196 aa18.98■□□□□ 0.63
LDLR-206ENST00000557958 VCPKMTQ9H867 229 aa18.98■□□□□ 0.63
LDLR-206ENST00000557958 NMRK2Q9NPI5 230 aa18.98■□□□□ 0.63
LDLR-206ENST00000557958 PLA2G6O60733 806 aa18.97■□□□□ 0.63
LDLR-206ENST00000557958 USP11P51784 963 aa18.97■□□□□ 0.63
LDLR-206ENST00000557958 FMR1Q06787 632 aaKnown RBP eCLIP18.97■□□□□ 0.636e-7■□□□□ 8.6
LDLR-206ENST00000557958 MTMR2Q13614 643 aa18.97■□□□□ 0.63
LDLR-206ENST00000557958 FAM160B2Q86V87 743 aa18.97■□□□□ 0.63
LDLR-206ENST00000557958 IGSF22Q8N9C0 903 aa18.97■□□□□ 0.63
LDLR-206ENST00000557958 MTMR9Q96QG7 549 aa18.97■□□□□ 0.63
LDLR-206ENST00000557958 DDX25Q9UHL0 483 aaKnown RBP18.97■□□□□ 0.63
LDLR-206ENST00000557958 TRAF5O00463 557 aa18.97■□□□□ 0.63
LDLR-206ENST00000557958 IREB2P48200 963 aaKnown RBP18.97■□□□□ 0.63
LDLR-206ENST00000557958 MAP3K9P80192 1104 aa18.97■□□□□ 0.63
LDLR-206ENST00000557958 PDIA5Q14554 519 aa18.97■□□□□ 0.63
LDLR-206ENST00000557958 DDX55Q8NHQ9 600 aaKnown RBP eCLIP18.97■□□□□ 0.63
LDLR-206ENST00000557958 GTPBP4Q9BZE4 634 aaKnown RBP18.97■□□□□ 0.63
LDLR-206ENST00000557958 TTC12Q9H892 705 aaPredicted RBP18.97■□□□□ 0.63
LDLR-206ENST00000557958 AS3MTQ9HBK9 375 aa18.97■□□□□ 0.63
LDLR-206ENST00000557958 PRR12Q9ULL5 1215 aa18.97■□□□□ 0.63
LDLR-206ENST00000557958 CSADQ9Y600 493 aa18.97■□□□□ 0.63
LDLR-206ENST00000557958 MARCH6O60337 910 aa18.96■□□□□ 0.63
LDLR-206ENST00000557958 CDC25AP30304 524 aa18.96■□□□□ 0.63
LDLR-206ENST00000557958 TECP42680 631 aa18.96■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms