RNA–Protein interactions for RNA: ENST00000554776.5

SCFD1-213, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 583 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-213ENST00000554776 PDLIM7Q9NR12 457 aa4.72□□□□□ -1.65
SCFD1-213ENST00000554776 SNTG2Q9NY99 539 aa4.72□□□□□ -1.65
SCFD1-213ENST00000554776 NPHP3-ACAD11A0A0J9YXS1 232 aa4.71□□□□□ -1.66
SCFD1-213ENST00000554776 TEX51A0A1B0GUA7 166 aa4.71□□□□□ -1.66
SCFD1-213ENST00000554776 A0A1W2PQ27 194 aa4.71□□□□□ -1.66
SCFD1-213ENST00000554776 A0A1W2PQ64 194 aa4.71□□□□□ -1.66
SCFD1-213ENST00000554776 A0A1W2PQC6 194 aa4.71□□□□□ -1.66
SCFD1-213ENST00000554776 A0A1W2PQD8 194 aa4.71□□□□□ -1.66
SCFD1-213ENST00000554776 A0A1W2PQU0 124 aa4.71□□□□□ -1.66
SCFD1-213ENST00000554776 CCDC85CA6NKD9 419 aa4.71□□□□□ -1.66
SCFD1-213ENST00000554776 ABLIM1O14639 778 aa4.71□□□□□ -1.66
SCFD1-213ENST00000554776 SRGAP3O43295 1099 aa4.71□□□□□ -1.66
SCFD1-213ENST00000554776 SMARCA5O60264 1052 aaPredicted RBP4.71□□□□□ -1.66
SCFD1-213ENST00000554776 SEMA7AO75326 666 aa4.71□□□□□ -1.66
SCFD1-213ENST00000554776 MPOP05164 745 aa4.71□□□□□ -1.66
SCFD1-213ENST00000554776 SCG5P05408 212 aa4.71□□□□□ -1.66
SCFD1-213ENST00000554776 THBDP07204 575 aa4.71□□□□□ -1.66
SCFD1-213ENST00000554776 PLS3P13797 630 aa4.71□□□□□ -1.66
SCFD1-213ENST00000554776 CBX2Q14781 532 aaPredicted RBP4.71□□□□□ -1.66
SCFD1-213ENST00000554776 SPATC1Q76KD6 591 aa4.71□□□□□ -1.66
SCFD1-213ENST00000554776 SGSM3Q96HU1 749 aa4.71□□□□□ -1.66
SCFD1-213ENST00000554776 DEPDC7Q96QD5 511 aa4.71□□□□□ -1.66
SCFD1-213ENST00000554776 MMP19Q99542 508 aa4.71□□□□□ -1.66
SCFD1-213ENST00000554776 GPRC5CQ9NQ84 441 aa4.71□□□□□ -1.66
SCFD1-213ENST00000554776 KLHL14Q9P2G3 628 aa4.71□□□□□ -1.66
SCFD1-213ENST00000554776 LRP2BPQ9P2M1 347 aa4.71□□□□□ -1.66
SCFD1-213ENST00000554776 ETV2O00321 342 aaPredicted RBP4.7□□□□□ -1.66
SCFD1-213ENST00000554776 NFIBO00712 420 aa4.7□□□□□ -1.66
SCFD1-213ENST00000554776 TMEM253P0C7T8 217 aa4.7□□□□□ -1.66
SCFD1-213ENST00000554776 C1QTNF9P0C862 333 aa4.7□□□□□ -1.66
SCFD1-213ENST00000554776 HOXC12P31275 282 aa4.7□□□□□ -1.66
SCFD1-213ENST00000554776 VIPR1P32241 457 aa4.7□□□□□ -1.66
SCFD1-213ENST00000554776 GRIA2P42262 883 aa4.7□□□□□ -1.66
SCFD1-213ENST00000554776 RAP1GAPP47736 663 aa4.7□□□□□ -1.66
SCFD1-213ENST00000554776 PPP2R2AP63151 447 aa4.7□□□□□ -1.66
SCFD1-213ENST00000554776 RBM10P98175 930 aaKnown RBP4.7□□□□□ -1.66
SCFD1-213ENST00000554776 TMEM62Q0P6H9 643 aa4.7□□□□□ -1.66
SCFD1-213ENST00000554776 GIMAP6Q6P9H5 292 aa4.7□□□□□ -1.66
SCFD1-213ENST00000554776 RPTNQ6XPR3 784 aa4.7□□□□□ -1.66
SCFD1-213ENST00000554776 CPNE8Q86YQ8 564 aa4.7□□□□□ -1.66
SCFD1-213ENST00000554776 CILP2Q8IUL8 1156 aa4.7□□□□□ -1.66
SCFD1-213ENST00000554776 NPLOC4Q8TAT6 608 aa4.7□□□□□ -1.66
SCFD1-213ENST00000554776 FRS2Q8WU20 508 aa4.7□□□□□ -1.66
SCFD1-213ENST00000554776 KCNN1Q92952 543 aa4.7□□□□□ -1.66
SCFD1-213ENST00000554776 PIF1Q9H611 641 aa4.7□□□□□ -1.66
SCFD1-213ENST00000554776 ZSWIM4Q9H7M6 989 aa4.7□□□□□ -1.66
SCFD1-213ENST00000554776 GCM1Q9NP62 436 aa4.7□□□□□ -1.66
SCFD1-213ENST00000554776 CD320Q9NPF0 282 aa4.7□□□□□ -1.66
SCFD1-213ENST00000554776 ARHGEF4Q9NR80 690 aa4.7□□□□□ -1.66
SCFD1-213ENST00000554776 CLEC1BQ9P126 229 aa4.7□□□□□ -1.66
SCFD1-213ENST00000554776 C7orf72A4D263 438 aa4.69□□□□□ -1.66
SCFD1-213ENST00000554776 DBX1A6NMT0 343 aa4.69□□□□□ -1.66
SCFD1-213ENST00000554776 NUDT19A8MXV4 375 aa4.69□□□□□ -1.66
SCFD1-213ENST00000554776 AGRPO00253 132 aa4.69□□□□□ -1.66
SCFD1-213ENST00000554776 ADCY3O60266 1144 aa4.69□□□□□ -1.66
SCFD1-213ENST00000554776 DIAPH1O60610 1272 aaKnown RBP4.69□□□□□ -1.66
SCFD1-213ENST00000554776 PPP1R11O60927 126 aaPredicted RBP4.69□□□□□ -1.66
SCFD1-213ENST00000554776 DBHP09172 617 aa4.69□□□□□ -1.66
SCFD1-213ENST00000554776 GFRA1P56159 465 aa4.69□□□□□ -1.66
SCFD1-213ENST00000554776 DLG4P78352 724 aa4.69□□□□□ -1.66
SCFD1-213ENST00000554776 SRSF3P84103 164 aaKnown RBP4.69□□□□□ -1.66
SCFD1-213ENST00000554776 BMS1Q14692 1282 aaKnown RBP4.69□□□□□ -1.66
SCFD1-213ENST00000554776 NR1I3Q14994 352 aa4.69□□□□□ -1.66
SCFD1-213ENST00000554776 RAB3GAP1Q15042 981 aa4.69□□□□□ -1.66
SCFD1-213ENST00000554776 TESK1Q15569 626 aa4.69□□□□□ -1.66
SCFD1-213ENST00000554776 SF1Q15637 639 aaKnown RBP4.69□□□□□ -1.66
SCFD1-213ENST00000554776 MTERF2Q49AM1 385 aa4.69□□□□□ -1.66
SCFD1-213ENST00000554776 E4F1Q66K89 784 aaPredicted RBP4.69□□□□□ -1.66
SCFD1-213ENST00000554776 OLFML2BQ68BL8 750 aa4.69□□□□□ -1.66
SCFD1-213ENST00000554776 MBLAC2Q68D91 279 aa4.69□□□□□ -1.66
SCFD1-213ENST00000554776 PAQR3Q6TCH7 311 aa4.69□□□□□ -1.66
SCFD1-213ENST00000554776 KREMEN2Q8NCW0 462 aa4.69□□□□□ -1.66
SCFD1-213ENST00000554776 C1orf159Q96HA4 380 aa4.69□□□□□ -1.66
SCFD1-213ENST00000554776 CCDC140Q96MF4 163 aa4.69□□□□□ -1.66
SCFD1-213ENST00000554776 SRPK1Q96SB4 655 aaKnown RBP4.69□□□□□ -1.66
SCFD1-213ENST00000554776 MTA3Q9BTC8 594 aa4.69□□□□□ -1.66
SCFD1-213ENST00000554776 MBD1Q9UIS9 605 aaPredicted RBP4.69□□□□□ -1.66
SCFD1-213ENST00000554776 CDK11AQ9UQ88 783 aaPredicted RBP4.69□□□□□ -1.66
SCFD1-213ENST00000554776 A0A1W2PQJ5 194 aa4.68□□□□□ -1.66
SCFD1-213ENST00000554776 IQCA1LA6NCM1 817 aa4.68□□□□□ -1.66
SCFD1-213ENST00000554776 NPHS1O60500 1241 aa4.68□□□□□ -1.66
SCFD1-213ENST00000554776 CPP00450 1065 aa4.68□□□□□ -1.66
SCFD1-213ENST00000554776 CYBBP04839 570 aa4.68□□□□□ -1.66
SCFD1-213ENST00000554776 SNRPB2P08579 225 aaKnown RBP4.68□□□□□ -1.66
SCFD1-213ENST00000554776 GLI4P10075 376 aa4.68□□□□□ -1.66
SCFD1-213ENST00000554776 TACR1P25103 407 aa4.68□□□□□ -1.66
SCFD1-213ENST00000554776 MAPKAPK2P49137 400 aa4.68□□□□□ -1.66
SCFD1-213ENST00000554776 JAG1P78504 1218 aa4.68□□□□□ -1.66
SCFD1-213ENST00000554776 SSRP1Q08945 709 aaKnown RBP4.68□□□□□ -1.66
SCFD1-213ENST00000554776 PLEKHN1Q494U1 663 aaPredicted RBP4.68□□□□□ -1.66
SCFD1-213ENST00000554776 ACBD5Q5T8D3 534 aaPredicted RBP4.68□□□□□ -1.66
SCFD1-213ENST00000554776 BICRALQ6AI39 1079 aa4.68□□□□□ -1.66
SCFD1-213ENST00000554776 IQCEQ6IPM2 695 aa4.68□□□□□ -1.66
SCFD1-213ENST00000554776 ATG14Q6ZNE5 492 aa4.68□□□□□ -1.66
SCFD1-213ENST00000554776 FAM177A1Q8N128 213 aaPredicted RBP4.68□□□□□ -1.66
SCFD1-213ENST00000554776 LRRC47Q8N1G4 583 aaKnown RBP4.68□□□□□ -1.66
SCFD1-213ENST00000554776 LZTR1Q8N653 840 aa4.68□□□□□ -1.66
SCFD1-213ENST00000554776 SPATA9Q9BWV2 254 aa4.68□□□□□ -1.66
SCFD1-213ENST00000554776 CNTD2Q9H8S5 307 aa4.68□□□□□ -1.66
SCFD1-213ENST00000554776 GULP1Q9UBP9 304 aa4.68□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms