RNA–Protein interactions for RNA: ENST00000549249.5

DEPDC4-207, Transcript of DEP domain containing 4, humanhuman

TSL 1 (best)

Gene DEPDC4, Length 1,003 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-207ENST00000549249 CCDC148Q8NFR7 591 aa9.3□□□□□ -0.92
DEPDC4-207ENST00000549249 RASGRP4Q8TDF6 673 aa9.3□□□□□ -0.92
DEPDC4-207ENST00000549249 WNT2BQ93097 391 aa9.3□□□□□ -0.92
DEPDC4-207ENST00000549249 KIFC2Q96AC6 838 aa9.3□□□□□ -0.92
DEPDC4-207ENST00000549249 USP28Q96RU2 1077 aa9.3□□□□□ -0.92
DEPDC4-207ENST00000549249 ZMYND12Q9H0C1 365 aa9.3□□□□□ -0.92
DEPDC4-207ENST00000549249 RANBP17Q9H2T7 1088 aaKnown RBP9.3□□□□□ -0.92
DEPDC4-207ENST00000549249 RPAP3Q9H6T3 665 aaPredicted RBP9.3□□□□□ -0.92
DEPDC4-207ENST00000549249 LMBRD1Q9NUN5 540 aa9.3□□□□□ -0.92
DEPDC4-207ENST00000549249 TFIP11Q9UBB9 837 aaKnown RBP9.3□□□□□ -0.92
DEPDC4-207ENST00000549249 PASKQ96RG2 1323 aa9.3□□□□□ -0.92
DEPDC4-207ENST00000549249 WNT7AO00755 349 aa9.29□□□□□ -0.92
DEPDC4-207ENST00000549249 IRF6O14896 467 aa9.29□□□□□ -0.92
DEPDC4-207ENST00000549249 FIBPO43427 364 aa9.29□□□□□ -0.92
DEPDC4-207ENST00000549249 CELF2O95319 508 aaKnown RBP9.29□□□□□ -0.92
DEPDC4-207ENST00000549249 NCLP19338 710 aaKnown RBP9.29□□□□□ -0.92
DEPDC4-207ENST00000549249 TOB1P50616 345 aaPredicted RBP9.29□□□□□ -0.92
DEPDC4-207ENST00000549249 KRT85P78386 507 aa9.29□□□□□ -0.92
DEPDC4-207ENST00000549249 PPATQ06203 517 aa9.29□□□□□ -0.92
DEPDC4-207ENST00000549249 PPIL2Q13356 520 aa9.29□□□□□ -0.92
DEPDC4-207ENST00000549249 SAFBQ15424 915 aaKnown RBP eCLIP9.29□□□□□ -0.92
DEPDC4-207ENST00000549249 DEFB115Q30KQ5 88 aa9.29□□□□□ -0.92
DEPDC4-207ENST00000549249 PPP1R18Q6NYC8 613 aa9.29□□□□□ -0.92
DEPDC4-207ENST00000549249 ERO1BQ86YB8 467 aa9.29□□□□□ -0.92
DEPDC4-207ENST00000549249 NOSTRINQ8IVI9 506 aa9.29□□□□□ -0.92
DEPDC4-207ENST00000549249 FAM177A1Q8N128 213 aaPredicted RBP9.29□□□□□ -0.92
DEPDC4-207ENST00000549249 CHURC1Q8WUH1 139 aa9.29□□□□□ -0.92
DEPDC4-207ENST00000549249 GBA2Q9HCG7 927 aaPredicted RBP9.29□□□□□ -0.92
DEPDC4-207ENST00000549249 ABT1Q9ULW3 272 aaKnown RBP9.29□□□□□ -0.92
DEPDC4-207ENST00000549249 PCDHA4Q9UN74 947 aa9.29□□□□□ -0.92
DEPDC4-207ENST00000549249 KCNH4Q9UQ05 1017 aa9.29□□□□□ -0.92
DEPDC4-207ENST00000549249 ZNF536O15090 1300 aa9.29□□□□□ -0.92
DEPDC4-207ENST00000549249 A0A0G2JLL6 359 aaPredicted RBP9.28□□□□□ -0.92
DEPDC4-207ENST00000549249 SMCO2A6NFE2 343 aa9.28□□□□□ -0.92
DEPDC4-207ENST00000549249 DDX11L8A8MPP1 907 aa9.28□□□□□ -0.92
DEPDC4-207ENST00000549249 OPLAHO14841 1288 aa9.28□□□□□ -0.92
DEPDC4-207ENST00000549249 CALML3P27482 149 aa9.28□□□□□ -0.92
DEPDC4-207ENST00000549249 CLK2P49760 499 aaKnown RBP9.28□□□□□ -0.92
DEPDC4-207ENST00000549249 VEGFBP49765 207 aa9.28□□□□□ -0.92
DEPDC4-207ENST00000549249 MAP2K1Q02750 393 aaPredicted RBP9.28□□□□□ -0.92
DEPDC4-207ENST00000549249 MOGSQ13724 837 aa9.28□□□□□ -0.92
DEPDC4-207ENST00000549249 TREML2Q5T2D2 321 aa9.28□□□□□ -0.92
DEPDC4-207ENST00000549249 CST9Q5W186 159 aa9.28□□□□□ -0.92
DEPDC4-207ENST00000549249 PRRT2Q7Z6L0 340 aaPredicted RBP9.28□□□□□ -0.92
DEPDC4-207ENST00000549249 FBXO11Q86XK2 927 aa9.28□□□□□ -0.92
DEPDC4-207ENST00000549249 LEO1Q8WVC0 666 aaPredicted RBP9.28□□□□□ -0.92
DEPDC4-207ENST00000549249 OPTNQ96CV9 577 aa9.28□□□□□ -0.92
DEPDC4-207ENST00000549249 WNK4Q96J92 1243 aa9.28□□□□□ -0.92
DEPDC4-207ENST00000549249 SLF1Q9BQI6 1058 aa9.28□□□□□ -0.92
DEPDC4-207ENST00000549249 BEGAINQ9BUH8 593 aa9.28□□□□□ -0.92
DEPDC4-207ENST00000549249 AMNQ9BXJ7 453 aa9.28□□□□□ -0.92
DEPDC4-207ENST00000549249 TANGO6Q9C0B7 1094 aa9.28□□□□□ -0.92
DEPDC4-207ENST00000549249 PRDM10Q9NQV6 1147 aa9.28□□□□□ -0.92
DEPDC4-207ENST00000549249 PPP1R9AQ9ULJ8 1098 aa9.28□□□□□ -0.92
DEPDC4-207ENST00000549249 PCDHA6Q9UN73 950 aa9.28□□□□□ -0.92
DEPDC4-207ENST00000549249 PCDHA8Q9Y5H6 950 aa9.28□□□□□ -0.92
DEPDC4-207ENST00000549249 CLIC4Q9Y696 253 aa9.28□□□□□ -0.92
DEPDC4-207ENST00000549249 LCTP09848 1927 aa9.28□□□□□ -0.92
DEPDC4-207ENST00000549249 RASSF10A6NK89 507 aa9.27□□□□□ -0.93
DEPDC4-207ENST00000549249 CXCL11O14625 94 aa9.27□□□□□ -0.93
DEPDC4-207ENST00000549249 GADD45BO75293 160 aaPredicted RBP9.27□□□□□ -0.93
DEPDC4-207ENST00000549249 PRPF40AO75400 957 aaKnown RBP9.27□□□□□ -0.93
DEPDC4-207ENST00000549249 FLOT1O75955 427 aa9.27□□□□□ -0.93
DEPDC4-207ENST00000549249 NASPP49321 788 aaPredicted RBP9.27□□□□□ -0.93
DEPDC4-207ENST00000549249 ADCY7P51828 1080 aa9.27□□□□□ -0.93
DEPDC4-207ENST00000549249 FKBP1BP68106 108 aa9.27□□□□□ -0.93
DEPDC4-207ENST00000549249 CEBPZQ03701 1054 aaKnown RBP9.27□□□□□ -0.93
DEPDC4-207ENST00000549249 GNL2Q13823 731 aaKnown RBP9.27□□□□□ -0.93
DEPDC4-207ENST00000549249 PTPAQ15257 358 aa9.27□□□□□ -0.93
DEPDC4-207ENST00000549249 UBE2SQ16763 222 aa9.27□□□□□ -0.93
DEPDC4-207ENST00000549249 USH1GQ495M9 461 aa9.27□□□□□ -0.93
DEPDC4-207ENST00000549249 ATL3Q6DD88 541 aa9.27□□□□□ -0.93
DEPDC4-207ENST00000549249 GALNT17Q6IS24 598 aa9.27□□□□□ -0.93
DEPDC4-207ENST00000549249 CCDC174Q6PII3 467 aa9.27□□□□□ -0.93
DEPDC4-207ENST00000549249 CATSPERGQ6ZRH7 1159 aa9.27□□□□□ -0.93
DEPDC4-207ENST00000549249 PRPF38AQ8NAV1 312 aaKnown RBP9.27□□□□□ -0.93
DEPDC4-207ENST00000549249 LINC00301Q8NCQ3 95 aa9.27□□□□□ -0.93
DEPDC4-207ENST00000549249 REPS2Q8NFH8 660 aa9.27□□□□□ -0.93
DEPDC4-207ENST00000549249 CCDC12Q8WUD4 166 aaPredicted RBP9.27□□□□□ -0.93
DEPDC4-207ENST00000549249 ATG4CQ96DT6 458 aa9.27□□□□□ -0.93
DEPDC4-207ENST00000549249 ZNF396Q96N95 335 aaPredicted RBP9.27□□□□□ -0.93
DEPDC4-207ENST00000549249 P2RX7Q99572 595 aaKnown RBP9.27□□□□□ -0.93
DEPDC4-207ENST00000549249 SLC38A10Q9HBR0 1119 aa9.27□□□□□ -0.93
DEPDC4-207ENST00000549249 BRMS1Q9HCU9 246 aa9.27□□□□□ -0.93
DEPDC4-207ENST00000549249 C6orf50Q9HD87 102 aa9.27□□□□□ -0.93
DEPDC4-207ENST00000549249 RIC8AQ9NPQ8 531 aa9.27□□□□□ -0.93
DEPDC4-207ENST00000549249 POLR3EQ9NVU0 708 aa9.27□□□□□ -0.93
DEPDC4-207ENST00000549249 TMEM260Q9NX78 707 aa9.27□□□□□ -0.93
DEPDC4-207ENST00000549249 RTEL1Q9NZ71 1219 aa9.27□□□□□ -0.93
DEPDC4-207ENST00000549249 TMOD4Q9NZQ9 345 aa9.27□□□□□ -0.93
DEPDC4-207ENST00000549249 PCDHA1Q9Y5I3 950 aa9.27□□□□□ -0.93
DEPDC4-207ENST00000549249 ELP1O95163 1332 aa9.27□□□□□ -0.93
DEPDC4-207ENST00000549249 UNCXA6NJT0 531 aa9.26□□□□□ -0.93
DEPDC4-207ENST00000549249 USP17L15C9J2P7 530 aa9.26□□□□□ -0.93
DEPDC4-207ENST00000549249 USP17L13C9JLJ4 530 aa9.26□□□□□ -0.93
DEPDC4-207ENST00000549249 USP17L11C9JVI0 530 aa9.26□□□□□ -0.93
DEPDC4-207ENST00000549249 USP17L18D6R9N7 530 aa9.26□□□□□ -0.93
DEPDC4-207ENST00000549249 USP17L22D6RA61 530 aa9.26□□□□□ -0.93
DEPDC4-207ENST00000549249 USP17L17D6RBQ6 530 aa9.26□□□□□ -0.93
DEPDC4-207ENST00000549249 USP17L19D6RCP7 530 aa9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 110 ms